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2 Commits

Author SHA1 Message Date
Andrew Kane
ba16f5e7cf Fixed CI [skip ci] 2023-09-27 13:47:51 -07:00
Andrew Kane
4a1a91abf9 Set -fanalyzer on CI 2023-09-27 13:42:23 -07:00
25 changed files with 205 additions and 1374 deletions

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@@ -8,8 +8,6 @@ jobs:
fail-fast: false
matrix:
include:
- postgres: 17
os: ubuntu-22.04
- postgres: 16
os: ubuntu-22.04
- postgres: 15
@@ -23,7 +21,7 @@ jobs:
- postgres: 11
os: ubuntu-20.04
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v3
- uses: ankane/setup-postgres@v1
with:
postgres-version: ${{ matrix.postgres }}
@@ -41,11 +39,15 @@ jobs:
sudo apt-get update
sudo apt-get install libipc-run-perl
- run: make prove_installcheck
- if: ${{ matrix.os == 'ubuntu-22.04' }}
run: make clean && make
env:
PG_CFLAGS: -Werror -fanalyzer
mac:
runs-on: macos-latest
if: ${{ !startsWith(github.ref_name, 'windows') }}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v3
- uses: ankane/setup-postgres@v1
with:
postgres-version: 14
@@ -67,7 +69,7 @@ jobs:
runs-on: windows-latest
if: ${{ !startsWith(github.ref_name, 'mac') }}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v3
- uses: ankane/setup-postgres@v1
with:
postgres-version: 14

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@@ -1,11 +1,6 @@
## 0.6.0 (unreleased)
## 0.5.1 (unreleased)
- Added support for sparse vectors
## 0.5.1 (2023-10-10)
- Improved performance of HNSW index builds
- Added check for MVCC-compliant snapshot for index scans
- Improved performance of index scans for IVFFlat after updates and deletes
## 0.5.0 (2023-08-28)

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@@ -2,7 +2,7 @@
"name": "vector",
"abstract": "Open-source vector similarity search for Postgres",
"description": "Supports L2 distance, inner product, and cosine distance",
"version": "0.5.1",
"version": "0.5.0",
"maintainer": [
"Andrew Kane <andrew@ankane.org>"
],
@@ -20,7 +20,7 @@
"vector": {
"file": "sql/vector.sql",
"docfile": "README.md",
"version": "0.5.1",
"version": "0.5.0",
"abstract": "Open-source vector similarity search for Postgres"
}
},

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@@ -1,10 +1,10 @@
EXTENSION = vector
EXTVERSION = 0.5.1
EXTVERSION = 0.5.0
MODULE_big = vector
DATA = $(wildcard sql/*--*.sql)
OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/svector.o src/vector.o
HEADERS = src/svector.h src/vector.h
OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
HEADERS = src/vector.h
TESTS = $(wildcard test/sql/*.sql)
REGRESS = $(patsubst test/sql/%.sql,%,$(TESTS))

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@@ -1,8 +1,8 @@
EXTENSION = vector
EXTVERSION = 0.5.1
EXTVERSION = 0.5.0
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\svector.obj src\vector.obj
HEADERS = src\svector.h src\vector.h
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
HEADERS = src\vector.h
REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
@@ -56,7 +56,7 @@ install:
copy $(EXTENSION).control "$(SHAREDIR)\extension"
copy sql\$(EXTENSION)--*.sql "$(SHAREDIR)\extension"
mkdir "$(INCLUDEDIR_SERVER)\extension\$(EXTENSION)"
for %f in ($(HEADERS)) do copy %f "$(INCLUDEDIR_SERVER)\extension\$(EXTENSION)"
copy $(HEADERS) "$(INCLUDEDIR_SERVER)\extension\$(EXTENSION)"
installcheck:
"$(BINDIR)\pg_regress" --bindir="$(BINDIR)" $(REGRESS_OPTS) $(REGRESS)

121
README.md
View File

@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
```sh
cd /tmp
git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
cd pgvector
make
make install # may need sudo
@@ -26,7 +26,7 @@ make install # may need sudo
See the [installation notes](#installation-notes) if you run into issues
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector).
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres)
## Getting Started
@@ -215,23 +215,6 @@ SELECT ...
COMMIT;
```
### Indexing Progress
Check [indexing progress](https://www.postgresql.org/docs/current/progress-reporting.html#CREATE-INDEX-PROGRESS-REPORTING) with Postgres 12+
```sql
SELECT phase, round(100.0 * tuples_done / nullif(tuples_total, 0), 1) AS "%" FROM pg_stat_progress_create_index;
```
The phases for IVFFlat are:
1. `initializing`
2. `performing k-means`
3. `assigning tuples`
4. `loading tuples`
Note: `%` is only populated during the `loading tuples` phase
## HNSW
An HNSW index creates a multilayer graph. It has slower build times and uses more memory than IVFFlat, but has better query performance (in terms of speed-recall tradeoff). Theres no training step like IVFFlat, so the index can be created without any data in the table.
@@ -288,18 +271,22 @@ SELECT ...
COMMIT;
```
### Indexing Progress
## Indexing Progress
Check [indexing progress](https://www.postgresql.org/docs/current/progress-reporting.html#CREATE-INDEX-PROGRESS-REPORTING) with Postgres 12+
```sql
SELECT phase, round(100.0 * blocks_done / nullif(blocks_total, 0), 1) AS "%" FROM pg_stat_progress_create_index;
SELECT phase, tuples_done, tuples_total FROM pg_stat_progress_create_index;
```
The phases for HNSW are:
The phases are:
1. `initializing`
2. `loading tuples`
2. `performing k-means` - IVFFlat only
3. `assigning tuples` - IVFFlat only
4. `loading tuples`
Note: `tuples_done` and `tuples_total` are only populated during the `loading tuples` phase
## Filtering
@@ -330,15 +317,13 @@ CREATE TABLE items (embedding vector(3), category_id int) PARTITION BY LIST(cate
## Hybrid Search
Use together with Postgres [full-text search](https://www.postgresql.org/docs/current/textsearch-intro.html) for hybrid search.
Use together with Postgres [full-text search](https://www.postgresql.org/docs/current/textsearch-intro.html) for hybrid search ([Python example](https://github.com/pgvector/pgvector-python/blob/master/examples/hybrid_search.py)).
```sql
SELECT id, content FROM items, plainto_tsquery('hello search') query
WHERE textsearch @@ query ORDER BY ts_rank_cd(textsearch, query) DESC LIMIT 5;
```
You can use [Reciprocal Rank Fusion](https://github.com/pgvector/pgvector-python/blob/master/examples/hybrid_search_rrf.py) or a [cross-encoder](https://github.com/pgvector/pgvector-python/blob/master/examples/hybrid_search.py) to combine results.
## Performance
Use `EXPLAIN ANALYZE` to debug performance.
@@ -369,33 +354,12 @@ To speed up queries with an IVFFlat index, increase the number of inverted lists
CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000);
```
## Sparse Vectors
Create a sparse vector column with 10 dimensions
```sql
CREATE TABLE items (id bigserial PRIMARY KEY, embedding svector(10));
```
Insert vectors
```sql
INSERT INTO items (embedding) VALUES ('(0,1),(1,2),(2,3)|10|'), ('(0,4),(1,5),(4,6)|10|');
```
Get the nearest neighbors by L2 distance
```sql
SELECT * FROM items ORDER BY embedding <-> '(0,3),(1,1),(2,2)|10|' LIMIT 5;
```
## Languages
Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another.
Language | Libraries / Examples
--- | ---
C | [pgvector-c](https://github.com/pgvector/pgvector-c)
C++ | [pgvector-cpp](https://github.com/pgvector/pgvector-cpp)
C# | [pgvector-dotnet](https://github.com/pgvector/pgvector-dotnet)
Crystal | [pgvector-crystal](https://github.com/pgvector/pgvector-crystal)
@@ -403,11 +367,10 @@ Dart | [pgvector-dart](https://github.com/pgvector/pgvector-dart)
Elixir | [pgvector-elixir](https://github.com/pgvector/pgvector-elixir)
Go | [pgvector-go](https://github.com/pgvector/pgvector-go)
Haskell | [pgvector-haskell](https://github.com/pgvector/pgvector-haskell)
Java, Kotlin, Groovy, Scala | [pgvector-java](https://github.com/pgvector/pgvector-java)
JavaScript, TypeScript | [pgvector-node](https://github.com/pgvector/pgvector-node)
Java, Scala | [pgvector-java](https://github.com/pgvector/pgvector-java)
Julia | [pgvector-julia](https://github.com/pgvector/pgvector-julia)
Lua | [pgvector-lua](https://github.com/pgvector/pgvector-lua)
Nim | [pgvector-nim](https://github.com/pgvector/pgvector-nim)
Node.js | [pgvector-node](https://github.com/pgvector/pgvector-node)
Perl | [pgvector-perl](https://github.com/pgvector/pgvector-perl)
PHP | [pgvector-php](https://github.com/pgvector/pgvector-php)
Python | [pgvector-python](https://github.com/pgvector/pgvector-python)
@@ -415,7 +378,6 @@ R | [pgvector-r](https://github.com/pgvector/pgvector-r)
Ruby | [pgvector-ruby](https://github.com/pgvector/pgvector-ruby), [Neighbor](https://github.com/ankane/neighbor)
Rust | [pgvector-rust](https://github.com/pgvector/pgvector-rust)
Swift | [pgvector-swift](https://github.com/pgvector/pgvector-swift)
Zig | [pgvector-zig](https://github.com/pgvector/pgvector-zig)
## Frequently Asked Questions
@@ -431,55 +393,6 @@ Yes, pgvector uses the write-ahead log (WAL), which allows for replication and p
Youll need to use [dimensionality reduction](https://en.wikipedia.org/wiki/Dimensionality_reduction) at the moment.
#### Can I store vectors with different dimensions in the same column?
You can use `vector` as the type (instead of `vector(3)`).
```sql
CREATE TABLE embeddings (model_id bigint, item_id bigint, embedding vector, PRIMARY KEY (model_id, item_id));
```
However, you can only create indexes on rows with the same number of dimensions (using [expression](https://www.postgresql.org/docs/current/indexes-expressional.html) and [partial](https://www.postgresql.org/docs/current/indexes-partial.html) indexing):
```sql
CREATE INDEX ON embeddings USING hnsw ((embedding::vector(3)) vector_l2_ops) WHERE (model_id = 123);
```
and query with:
```sql
SELECT * FROM embeddings WHERE model_id = 123 ORDER BY embedding::vector(3) <-> '[3,1,2]' LIMIT 5;
```
#### Can I store vectors with more precision?
You can use the `double precision[]` or `numeric[]` type to store vectors with more precision.
```sql
CREATE TABLE items (id bigserial PRIMARY KEY, embedding double precision[]);
-- use {} instead of [] for Postgres arrays
INSERT INTO items (embedding) VALUES ('{1,2,3}'), ('{4,5,6}');
```
Optionally, add a [check constraint](https://www.postgresql.org/docs/current/ddl-constraints.html) to ensure data can be converted to the `vector` type and has the expected dimensions.
```sql
ALTER TABLE items ADD CHECK (vector_dims(embedding::vector) = 3);
```
Use [expression indexing](https://www.postgresql.org/docs/current/indexes-expressional.html) to index (at a lower precision):
```sql
CREATE INDEX ON items USING hnsw ((embedding::vector(3)) vector_l2_ops);
```
and query with:
```sql
SELECT * FROM items ORDER BY embedding::vector(3) <-> '[3,1,2]' LIMIT 5;
```
## Troubleshooting
#### Why isnt a query using an index?
@@ -493,8 +406,6 @@ SELECT ...
COMMIT;
```
Also, if the table is small, a table scan may be faster.
#### Why isnt a query using a parallel table scan?
The planner doesnt consider [out-of-line storage](https://www.postgresql.org/docs/current/storage-toast.html) in cost estimates, which can make a serial scan look cheaper. You can reduce the cost of a parallel scan for a query with:
@@ -598,7 +509,7 @@ Then use `nmake` to build:
```cmd
set "PGROOT=C:\Program Files\PostgreSQL\15"
git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
cd pgvector
nmake /F Makefile.win
nmake /F Makefile.win install
@@ -619,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
You can also build the image manually:
```sh
git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
cd pgvector
docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
```
@@ -684,7 +595,7 @@ pgvector is available on [these providers](https://github.com/pgvector/pgvector/
## Upgrading
[Install](#installation) the latest version (use the same method as the original installation). Then in each database you want to upgrade, run:
Install the latest version. Then in each database you want to upgrade, run:
```sql
ALTER EXTENSION vector UPDATE;

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@@ -1,2 +0,0 @@
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit

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@@ -1,79 +0,0 @@
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
\echo Use "ALTER EXTENSION vector UPDATE TO '0.6.0'" to load this file. \quit
CREATE TYPE svector;
CREATE FUNCTION svector_in(cstring, oid, integer) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_out(svector) RETURNS cstring
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_typmod_in(cstring[]) RETURNS integer
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_recv(internal, oid, integer) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_send(svector) RETURNS bytea
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE TYPE svector (
INPUT = svector_in,
OUTPUT = svector_out,
TYPMOD_IN = svector_typmod_in,
RECEIVE = svector_recv,
SEND = svector_send,
STORAGE = external
);
CREATE FUNCTION l2_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION inner_product(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_inner_product' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION cosine_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_cosine_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION jaccard_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_jaccard_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_l2_squared_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_negative_inner_product(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector(svector, integer, boolean) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION vector_to_svector(vector, integer, boolean) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_to_vector(svector, integer, boolean) RETURNS vector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE CAST (svector AS svector)
WITH FUNCTION svector(svector, integer, boolean) AS IMPLICIT;
CREATE CAST (svector AS vector)
WITH FUNCTION svector_to_vector(svector, integer, boolean) AS IMPLICIT;
CREATE CAST (vector AS svector)
WITH FUNCTION vector_to_svector(vector, integer, boolean) AS IMPLICIT;
CREATE OPERATOR <-> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = l2_distance,
COMMUTATOR = '<->'
);
CREATE OPERATOR <#> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = svector_negative_inner_product,
COMMUTATOR = '<#>'
);
CREATE OPERATOR <=> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = cosine_distance,
COMMUTATOR = '<=>'
);

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@@ -290,92 +290,3 @@ CREATE OPERATOR CLASS vector_cosine_ops
OPERATOR 1 <=> (vector, vector) FOR ORDER BY float_ops,
FUNCTION 1 vector_negative_inner_product(vector, vector),
FUNCTION 2 vector_norm(vector);
--- svector type
CREATE TYPE svector;
CREATE FUNCTION svector_in(cstring, oid, integer) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_out(svector) RETURNS cstring
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_typmod_in(cstring[]) RETURNS integer
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_recv(internal, oid, integer) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_send(svector) RETURNS bytea
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE TYPE svector (
INPUT = svector_in,
OUTPUT = svector_out,
TYPMOD_IN = svector_typmod_in,
RECEIVE = svector_recv,
SEND = svector_send,
STORAGE = external
);
-- svector functions
CREATE FUNCTION l2_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION inner_product(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_inner_product' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION cosine_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_cosine_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION jaccard_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME', 'svector_jaccard_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
-- svector private functions
CREATE FUNCTION svector_l2_squared_distance(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_negative_inner_product(svector, svector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
-- svector cast functions
CREATE FUNCTION svector(svector, integer, boolean) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION vector_to_svector(vector, integer, boolean) RETURNS svector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION svector_to_vector(svector, integer, boolean) RETURNS vector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
-- svector casts
CREATE CAST (svector AS svector)
WITH FUNCTION svector(svector, integer, boolean) AS IMPLICIT;
CREATE CAST (svector AS vector)
WITH FUNCTION svector_to_vector(svector, integer, boolean) AS IMPLICIT;
CREATE CAST (vector AS svector)
WITH FUNCTION vector_to_svector(vector, integer, boolean) AS IMPLICIT;
-- svector operators
CREATE OPERATOR <-> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = l2_distance,
COMMUTATOR = '<->'
);
CREATE OPERATOR <#> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = svector_negative_inner_product,
COMMUTATOR = '<#>'
);
CREATE OPERATOR <=> (
LEFTARG = svector, RIGHTARG = svector, PROCEDURE = cosine_distance,
COMMUTATOR = '<=>'
);

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@@ -57,8 +57,6 @@
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
#define PROGRESS_HNSW_PHASE_LOAD 2
#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
@@ -112,13 +110,11 @@ typedef struct HnswCandidate
{
HnswElement element;
float distance;
bool closer;
} HnswCandidate;
typedef struct HnswNeighborArray
{
int length;
bool closerSet;
HnswCandidate *items;
} HnswNeighborArray;

View File

@@ -117,12 +117,12 @@ CreateElementPages(HnswBuildState * buildstate)
ListCell *lc;
/* Calculate sizes */
maxSize = HNSW_MAX_SIZE;
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
/* Allocate once */
etup = palloc0(etupSize);
ntup = palloc0(BLCKSZ);
ntup = palloc0(maxSize);
/* Prepare first page */
buf = HnswNewBuffer(index, forkNum);

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@@ -135,7 +135,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
maxSize = HNSW_MAX_SIZE;
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
/* Prepare element tuple */

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@@ -160,11 +160,6 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
if (scan->orderByData == NULL)
elog(ERROR, "cannot scan hnsw index without order");
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
/* https://www.postgresql.org/docs/current/index-locking.html */
if (!IsMVCCSnapshot(scan->xs_snapshot))
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
/* Get scan value */
value = GetScanValue(scan);
@@ -206,6 +201,15 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
scan->xs_ctup.t_self = *heaptid;
#endif
/*
* Typically, an index scan must maintain a pin on the index page
* holding the item last returned by amgettuple. However, this is not
* needed with the current vacuum strategy, which ensures scans do not
* visit tuples in danger of being marked as deleted.
*
* https://www.postgresql.org/docs/current/index-locking.html
*/
scan->xs_recheckorderby = false;
return true;
}

View File

@@ -139,7 +139,6 @@ HnswInitNeighbors(HnswElement element, int m)
a = &element->neighbors[lc];
a->length = 0;
a->items = palloc(sizeof(HnswCandidate) * lm);
a->closerSet = false;
}
}
@@ -693,34 +692,6 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
return w;
}
/*
* Compare candidate distances
*/
static int
#if PG_VERSION_NUM >= 130000
CompareCandidateDistances(const ListCell *a, const ListCell *b)
#else
CompareCandidateDistances(const void *a, const void *b)
#endif
{
HnswCandidate *hca = lfirst((ListCell *) a);
HnswCandidate *hcb = lfirst((ListCell *) b);
if (hca->distance < hcb->distance)
return 1;
if (hca->distance > hcb->distance)
return -1;
if (hca->element < hcb->element)
return 1;
if (hca->element > hcb->element)
return -1;
return 0;
}
/*
* Calculate the distance between elements
*/
@@ -777,77 +748,33 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
* Algorithm 4 from paper
*/
static List *
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
{
List *r = NIL;
List *w = list_copy(c);
pairingheap *wd;
bool mustCalculate = !e2->neighbors[lc].closerSet;
List *added = NIL;
bool removedAny = false;
if (list_length(w) <= m)
return w;
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
/* Ensure order of candidates is deterministic for closer caching */
if (sortCandidates)
list_sort(w, CompareCandidateDistances);
while (list_length(w) > 0 && list_length(r) < m)
{
/* Assumes w is already ordered desc */
HnswCandidate *e = llast(w);
bool closer;
w = list_delete_last(w);
/* Use previous state of r and wd to skip work when possible */
if (mustCalculate)
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
else if (list_length(added) > 0)
{
/*
* If the current candidate was closer, we only need to compare it
* with the other candidates that we have added.
*/
if (e->closer)
{
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
closer = CheckElementCloser(e, r, lc, procinfo, collation);
if (!e->closer)
removedAny = true;
}
else
{
/*
* If we have removed any candidates from closer, a candidate
* that was not closer earlier might now be.
*/
if (removedAny)
{
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
if (e->closer)
added = lappend(added, e);
}
}
}
else if (e == newCandidate)
{
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
if (e->closer)
added = lappend(added, e);
}
if (e->closer)
if (closer)
r = lappend(r, e);
else
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
}
/* Cached value can only be used in future if sorted deterministically */
e2->neighbors[lc].closerSet = sortCandidates;
/* Keep pruned connections */
while (!pairingheap_is_empty(wd) && list_length(r) < m)
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
@@ -901,6 +828,28 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
}
/*
* Compare candidate distances
*/
static int
#if PG_VERSION_NUM >= 130000
CompareCandidateDistances(const ListCell *a, const ListCell *b)
#else
CompareCandidateDistances(const void *a, const void *b)
#endif
{
HnswCandidate *hca = lfirst((ListCell *) a);
HnswCandidate *hcb = lfirst((ListCell *) b);
if (hca->distance < hcb->distance)
return 1;
if (hca->distance > hcb->distance)
return -1;
return 0;
}
/*
* Update connections
*/
@@ -954,12 +903,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
{
List *c = NIL;
/* Add candidates */
/* Add and sort candidates */
for (int i = 0; i < currentNeighbors->length; i++)
c = lappend(c, &currentNeighbors->items[i]);
c = lappend(c, &hc2);
list_sort(c, CompareCandidateDistances);
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
/* Should not happen */
if (pruned == NULL)
@@ -1058,12 +1008,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
else
lw = w;
/*
* Candidates are sorted, but not deterministically. Could set
* sortCandidates to true for in-memory builds to enable closer
* caching, but there does not seem to be a difference in performance.
*/
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
AddConnections(element, neighbors, lm, lc);

View File

@@ -246,6 +246,8 @@ typedef struct IvfflatScanOpaqueData
int probes;
int dimensions;
bool first;
Buffer buf;
ItemPointerData heaptid;
/* Sorting */
Tuplesortstate *sortstate;

View File

@@ -99,7 +99,7 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
/* Get tuple size */
itemsz = MAXALIGN(IndexTupleSize(itup));
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
/* Find a page to insert the item */
for (;;)

View File

@@ -143,6 +143,10 @@ GetScanItems(IndexScanDesc scan, Datum value)
bool isnull;
ItemId itemid = PageGetItemId(page, offno);
/* Skip dead tuples */
if (scan->ignore_killed_tuples && ItemIdIsDead(itemid))
continue;
itup = (IndexTuple) PageGetItem(page, itemid);
datum = index_getattr(itup, 1, tupdesc, &isnull);
@@ -157,6 +161,8 @@ GetScanItems(IndexScanDesc scan, Datum value)
slot->tts_isnull[0] = false;
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
slot->tts_isnull[1] = false;
slot->tts_values[2] = Int32GetDatum((int) searchPage);
slot->tts_isnull[2] = false;
ExecStoreVirtualTuple(slot);
tuplesort_puttupleslot(so->sortstate, slot);
@@ -181,6 +187,55 @@ GetScanItems(IndexScanDesc scan, Datum value)
tuplesort_performsort(so->sortstate);
}
/*
* Mark prior tuple as dead
*/
static void
MarkPriorTupleDead(IndexScanDesc scan)
{
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
Buffer buf = so->buf;
Page page;
OffsetNumber maxoffno;
/* Safety check */
if (!BufferIsValid(so->buf) || !ItemPointerIsValid(&so->heaptid))
return;
/* Only a shared locked is needed for ItemIdMarkDead */
LockBuffer(buf, BUFFER_LOCK_SHARE);
page = BufferGetPage(buf);
maxoffno = PageGetMaxOffsetNumber(page);
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
{
ItemId itemid = PageGetItemId(page, offno);
IndexTuple itup = (IndexTuple) PageGetItem(page, itemid);
/*
* Find tuple. Since buffer has been pinned, tuple cannot have been
* vacuumed (and heap TID reused).
*/
if (ItemPointerEquals(&itup->t_tid, &so->heaptid))
{
/*
* Make sure tuple has not already been marked dead to avoid extra
* WAL if wal_log_hints or data checksums enabled
*/
if (!ItemIdIsDead(itemid))
{
ItemIdMarkDead(itemid);
MarkBufferDirtyHint(buf, true);
}
break;
}
}
/* Unlock buffer */
LockBuffer(buf, BUFFER_LOCK_UNLOCK);
}
/*
* Prepare for an index scan
*/
@@ -206,7 +261,9 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
probes = lists;
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
so->buf = InvalidBuffer;
so->first = true;
ItemPointerSetInvalid(&so->heaptid);
so->probes = probes;
so->dimensions = dimensions;
@@ -217,12 +274,13 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
/* Create tuple description for sorting */
#if PG_VERSION_NUM >= 120000
so->tupdesc = CreateTemplateTupleDesc(2);
so->tupdesc = CreateTemplateTupleDesc(3);
#else
so->tupdesc = CreateTemplateTupleDesc(2, false);
so->tupdesc = CreateTemplateTupleDesc(3, false);
#endif
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
/* Prep sort */
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
@@ -254,6 +312,7 @@ ivfflatrescan(IndexScanDesc scan, ScanKey keys, int nkeys, ScanKey orderbys, int
#endif
so->first = true;
ItemPointerSetInvalid(&so->heaptid);
pairingheap_reset(so->listQueue);
if (keys && scan->numberOfKeys > 0)
@@ -288,11 +347,6 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
if (scan->orderByData == NULL)
elog(ERROR, "cannot scan ivfflat index without order");
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
/* https://www.postgresql.org/docs/current/index-locking.html */
if (!IsMVCCSnapshot(scan->xs_snapshot))
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
if (scan->orderByData->sk_flags & SK_ISNULL)
value = PointerGetDatum(InitVector(so->dimensions));
else
@@ -316,10 +370,17 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
if (value != scan->orderByData->sk_argument)
pfree(DatumGetPointer(value));
}
else
{
/* Mark prior tuple as dead */
if (scan->kill_prior_tuple)
MarkPriorTupleDead(scan);
}
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
{
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
#if PG_VERSION_NUM >= 120000
scan->xs_heaptid = *heaptid;
@@ -327,6 +388,21 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
scan->xs_ctup.t_self = *heaptid;
#endif
/* Keep track of info needed to mark tuple as dead */
so->heaptid = *heaptid;
/* Unpin buffer */
if (BufferIsValid(so->buf))
ReleaseBuffer(so->buf);
/*
* An index scan must maintain a pin on the index page holding the
* item last returned by amgettuple
*
* https://www.postgresql.org/docs/current/index-locking.html
*/
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
scan->xs_recheckorderby = false;
return true;
}
@@ -342,6 +418,10 @@ ivfflatendscan(IndexScanDesc scan)
{
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
/* Release pin */
if (BufferIsValid(so->buf))
ReleaseBuffer(so->buf);
pairingheap_free(so->listQueue);
tuplesort_end(so->sortstate);

View File

@@ -1,705 +0,0 @@
#include "postgres.h"
#include <math.h>
#include "fmgr.h"
#include "libpq/pqformat.h"
#include "svector.h"
#include "utils/array.h"
#include "vector.h"
#if PG_VERSION_NUM >= 120000
#include "common/shortest_dec.h"
#include "utils/float.h"
#else
#include <float.h>
#include "utils/builtins.h"
#endif
/*
* Ensure same dimensions
*/
static inline void
CheckDims(SVector * a, SVector * b)
{
if (a->dim != b->dim)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("different svector dimensions %d and %d", a->dim, b->dim)));
}
/*
* Ensure expected dimensions
*/
static inline void
CheckExpectedDim(int32 typmod, int dim)
{
if (typmod != -1 && typmod != dim)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("expected %d dimensions, not %d", typmod, dim)));
}
/*
* Ensure valid dimensions
*/
static inline void
CheckDim(int dim)
{
if (dim < 1)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("svector must have at least 1 dimension")));
if (dim > SVECTOR_MAX_DIM)
ereport(ERROR,
(errcode(ERRCODE_PROGRAM_LIMIT_EXCEEDED),
errmsg("svector cannot have more than %d dimensions", SVECTOR_MAX_DIM)));
}
/*
* Ensure valid nnz
*/
static inline void
CheckNnz(int nnz, int dim)
{
if (nnz < 0)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("svector must have at least one element")));
if (nnz > dim)
ereport(ERROR,
(errcode(ERRCODE_PROGRAM_LIMIT_EXCEEDED),
errmsg("svector cannot have more elements than dimensions")));
}
/*
* Ensure valid index
*/
static inline void
CheckIndex(int32 *indices, int i, int dim)
{
int32 index = indices[i];
if (index < 0)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("index must not be negative")));
if (index >= dim)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("index must be less than dimensions")));
if (i > 0)
{
if (index < indices[i - 1])
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("indexes must be in ascending order")));
if (index == indices[i - 1])
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("indexes must not contain duplicates")));
}
}
/*
* Ensure finite element
*/
static inline void
CheckElement(float value)
{
if (isnan(value))
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("NaN not allowed in svector")));
if (isinf(value))
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("infinite value not allowed in svector")));
}
/*
* Allocate and initialize a new sparse vector
*/
SVector *
InitSVector(int dim, int nnz)
{
SVector *result;
int size;
size = SVECTOR_SIZE(nnz);
result = (SVector *) palloc0(size);
SET_VARSIZE(result, size);
result->dim = dim;
result->nnz = nnz;
return result;
}
/*
* Convert textual representation to internal representation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_in);
Datum
svector_in(PG_FUNCTION_ARGS)
{
char *str = PG_GETARG_CSTRING(0);
int32 typmod = PG_GETARG_INT32(2);
int dim;
char *pt;
SVector *result;
float *rvalues;
char *lit = pstrdup(str);
int n;
int32 *indices;
float *values;
int index;
float value;
int maxNnz;
int nnz = 0;
/* TODO Improve code and checks after deciding on format */
maxNnz = 1;
pt = str;
while (*pt != '\0')
{
if (*pt == ',')
maxNnz++;
pt++;
}
maxNnz /= 2;
indices = palloc(maxNnz * sizeof(int32));
values = palloc(maxNnz * sizeof(float));
while (sscanf(str, "(%d,%f)%n", &index, &value, &n) == 2)
{
/* TODO Better error */
if (nnz == maxNnz)
ereport(ERROR,
(errcode(ERRCODE_INVALID_TEXT_REPRESENTATION),
errmsg("ran out of buffer: \"%s\"", lit)));
/* TODO Decide whether to store zero values */
indices[nnz] = index;
values[nnz] = value;
nnz++;
str += n;
if (*str == ',')
str++;
else if (*str == '|')
break;
else
ereport(ERROR,
(errcode(ERRCODE_INVALID_TEXT_REPRESENTATION),
errmsg("malformed svector literal: \"%s\"", lit)));
}
if (sscanf(str, "|%d|%n", &dim, &n) != 1)
ereport(ERROR,
(errcode(ERRCODE_INVALID_TEXT_REPRESENTATION),
errmsg("malformed svector literal: \"%s\"", lit)));
str += n;
if (*str != '\0')
ereport(ERROR,
(errcode(ERRCODE_INVALID_TEXT_REPRESENTATION),
errmsg("malformed svector literal: \"%s\"", lit),
errdetail("Junk after closing pipe.")));
pfree(lit);
CheckDim(dim);
CheckExpectedDim(typmod, dim);
result = InitSVector(dim, nnz);
rvalues = SVECTOR_VALUES(result);
for (int i = 0; i < nnz; i++)
{
result->indices[i] = indices[i];
rvalues[i] = values[i];
CheckIndex(result->indices, i, dim);
CheckElement(rvalues[i]);
}
PG_RETURN_POINTER(result);
}
/*
* Convert internal representation to textual representation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_out);
Datum
svector_out(PG_FUNCTION_ARGS)
{
SVector *svector = PG_GETARG_SVECTOR_P(0);
float *values = SVECTOR_VALUES(svector);
char *buf;
char *ptr;
int n;
/* TODO Improve code after deciding on format */
#if PG_VERSION_NUM < 120000
int ndig = FLT_DIG + extra_float_digits;
if (ndig < 1)
ndig = 1;
#define FLOAT_SHORTEST_DECIMAL_LEN (ndig + 10)
#endif
/* TODO Move */
#define APPEND_CHAR(ptr, ch) (*(ptr)++ = (ch))
/* TODO Improve */
buf = (char *) palloc((FLOAT_SHORTEST_DECIMAL_LEN + 20) * svector->nnz + 20);
ptr = buf;
for (int i = 0; i < svector->nnz; i++)
{
if (i > 0)
APPEND_CHAR(ptr, ',');
n = sprintf(ptr, "(%d,", svector->indices[i]);
ptr += n;
#if PG_VERSION_NUM >= 120000
n = float_to_shortest_decimal_bufn(values[i], ptr);
#else
n = sprintf(ptr, "%.*g", ndig, values[i]);
#endif
ptr += n;
APPEND_CHAR(ptr, ')');
}
n = sprintf(ptr, "|%d|", svector->dim);
ptr += n;
APPEND_CHAR(ptr, '\0');
PG_FREE_IF_COPY(svector, 0);
PG_RETURN_CSTRING(buf);
}
/*
* Convert type modifier
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_typmod_in);
Datum
svector_typmod_in(PG_FUNCTION_ARGS)
{
ArrayType *ta = PG_GETARG_ARRAYTYPE_P(0);
int32 *tl;
int n;
tl = ArrayGetIntegerTypmods(ta, &n);
if (n != 1)
ereport(ERROR,
(errcode(ERRCODE_INVALID_PARAMETER_VALUE),
errmsg("invalid type modifier")));
if (*tl < 1)
ereport(ERROR,
(errcode(ERRCODE_INVALID_PARAMETER_VALUE),
errmsg("dimensions for type svector must be at least 1")));
if (*tl > SVECTOR_MAX_DIM)
ereport(ERROR,
(errcode(ERRCODE_INVALID_PARAMETER_VALUE),
errmsg("dimensions for type svector cannot exceed %d", SVECTOR_MAX_DIM)));
PG_RETURN_INT32(*tl);
}
/*
* Convert external binary representation to internal representation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_recv);
Datum
svector_recv(PG_FUNCTION_ARGS)
{
StringInfo buf = (StringInfo) PG_GETARG_POINTER(0);
int32 typmod = PG_GETARG_INT32(2);
SVector *result;
int32 dim;
int32 nnz;
int32 unused;
float *values;
dim = pq_getmsgint(buf, sizeof(int32));
nnz = pq_getmsgint(buf, sizeof(int32));
unused = pq_getmsgint(buf, sizeof(int32));
CheckDim(dim);
CheckNnz(nnz, dim);
CheckExpectedDim(typmod, dim);
if (unused != 0)
ereport(ERROR,
(errcode(ERRCODE_DATA_EXCEPTION),
errmsg("expected unused to be 0, not %d", unused)));
result = InitSVector(dim, nnz);
values = SVECTOR_VALUES(result);
for (int i = 0; i < nnz; i++)
{
result->indices[i] = pq_getmsgint(buf, sizeof(int32));
CheckIndex(result->indices, i, dim);
}
for (int i = 0; i < nnz; i++)
{
values[i] = pq_getmsgfloat4(buf);
CheckElement(values[i]);
}
PG_RETURN_POINTER(result);
}
/*
* Convert internal representation to the external binary representation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_send);
Datum
svector_send(PG_FUNCTION_ARGS)
{
SVector *svec = PG_GETARG_SVECTOR_P(0);
float *values = SVECTOR_VALUES(svec);
StringInfoData buf;
pq_begintypsend(&buf);
pq_sendint(&buf, svec->dim, sizeof(int32));
pq_sendint(&buf, svec->nnz, sizeof(int32));
pq_sendint(&buf, svec->unused, sizeof(int32));
for (int i = 0; i < svec->nnz; i++)
pq_sendint(&buf, svec->indices[i], sizeof(int32));
for (int i = 0; i < svec->nnz; i++)
pq_sendfloat4(&buf, values[i]);
PG_RETURN_BYTEA_P(pq_endtypsend(&buf));
}
/*
* Convert sparse vector to sparse vector
* This is needed to check the type modifier
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector);
Datum
svector(PG_FUNCTION_ARGS)
{
SVector *svec = PG_GETARG_SVECTOR_P(0);
int32 typmod = PG_GETARG_INT32(1);
CheckExpectedDim(typmod, svec->dim);
PG_RETURN_POINTER(svec);
}
/*
* Convert dense vector to sparse vector
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(vector_to_svector);
Datum
vector_to_svector(PG_FUNCTION_ARGS)
{
Vector *vec = PG_GETARG_VECTOR_P(0);
int32 typmod = PG_GETARG_INT32(1);
SVector *result;
int dim = vec->dim;
int nnz = 0;
float *values;
int j = 0;
CheckDim(dim);
CheckExpectedDim(typmod, dim);
for (int i = 0; i < dim; i++)
{
if (vec->x[i] != 0)
nnz++;
}
result = InitSVector(dim, nnz);
values = SVECTOR_VALUES(result);
for (int i = 0; i < dim; i++)
{
if (vec->x[i] != 0)
{
/* Safety check */
if (j == nnz)
elog(ERROR, "safety check failed");
result->indices[j] = i;
values[j] = vec->x[i];
j++;
}
}
PG_RETURN_POINTER(result);
}
/*
* Get the L2 squared distance between sparse vectors
*/
static double
l2_distance_squared_internal(SVector * a, SVector * b)
{
float *ax = SVECTOR_VALUES(a);
float *bx = SVECTOR_VALUES(b);
double distance = 0.0;
int bpos = 0;
for (int i = 0; i < a->nnz; i++)
{
int ai = a->indices[i];
int bi = -1;
for (int j = bpos; j < b->nnz; j++)
{
bi = b->indices[j];
if (ai == bi)
{
double diff = ax[i] - bx[j];
distance += diff * diff;
}
else if (ai > bi)
distance += bx[j] * bx[j];
/* Update start for next iteration */
if (ai >= bi)
bpos = j + 1;
/* Found or passed it */
if (bi >= ai)
break;
}
if (ai != bi)
distance += ax[i] * ax[i];
}
for (int j = bpos; j < b->nnz; j++)
distance += bx[j] * bx[j];
return distance;
}
/*
* Get the L2 distance between sparse vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_l2_distance);
Datum
svector_l2_distance(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
CheckDims(a, b);
PG_RETURN_FLOAT8(sqrt(l2_distance_squared_internal(a, b)));
}
/*
* Get the L2 squared distance between sparse vectors
* This saves a sqrt calculation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_l2_squared_distance);
Datum
svector_l2_squared_distance(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
CheckDims(a, b);
PG_RETURN_FLOAT8(l2_distance_squared_internal(a, b));
}
/*
* Get the inner product of two sparse vectors
*/
static double
inner_product_internal(SVector * a, SVector * b)
{
float *ax = SVECTOR_VALUES(a);
float *bx = SVECTOR_VALUES(b);
double distance = 0.0;
int bpos = 0;
for (int i = 0; i < a->nnz; i++)
{
int ai = a->indices[i];
for (int j = bpos; j < b->nnz; j++)
{
int bi = b->indices[j];
/* Only update when the same index */
if (ai == bi)
distance += ax[i] * bx[j];
/* Update start for next iteration */
if (ai >= bi)
bpos = j + 1;
/* Found or passed it */
if (bi >= ai)
break;
}
}
return distance;
}
/*
* Get the inner product of two sparse vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_inner_product);
Datum
svector_inner_product(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
CheckDims(a, b);
PG_RETURN_FLOAT8(inner_product_internal(a, b));
}
/*
* Get the negative inner product of two sparse vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_negative_inner_product);
Datum
svector_negative_inner_product(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
CheckDims(a, b);
PG_RETURN_FLOAT8(-inner_product_internal(a, b));
}
/*
* Get the cosine distance between two sparse vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_cosine_distance);
Datum
svector_cosine_distance(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
float *ax = SVECTOR_VALUES(a);
float *bx = SVECTOR_VALUES(b);
float norma = 0.0;
float normb = 0.0;
double similarity;
CheckDims(a, b);
similarity = inner_product_internal(a, b);
/* Auto-vectorized */
for (int i = 0; i < a->nnz; i++)
norma += ax[i] * ax[i];
/* Auto-vectorized */
for (int i = 0; i < b->nnz; i++)
normb += bx[i] * bx[i];
/* Use sqrt(a * b) over sqrt(a) * sqrt(b) */
similarity /= sqrt((double) norma * (double) normb);
#ifdef _MSC_VER
/* /fp:fast may not propagate NaN */
if (isnan(similarity))
PG_RETURN_FLOAT8(NAN);
#endif
/* Keep in range */
if (similarity > 1)
similarity = 1.0;
else if (similarity < -1)
similarity = -1.0;
PG_RETURN_FLOAT8(1.0 - similarity);
}
/*
* Get the weighted Jaccard distance between two sparse vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_jaccard_distance);
Datum
svector_jaccard_distance(PG_FUNCTION_ARGS)
{
SVector *a = PG_GETARG_SVECTOR_P(0);
SVector *b = PG_GETARG_SVECTOR_P(1);
float *ax = SVECTOR_VALUES(a);
float *bx = SVECTOR_VALUES(b);
double num = 0.0;
double denom = 0.0;
int bpos = 0;
CheckDims(a, b);
/*
* Weighted Jaccard distance is not defined for vectors with negative
* values. Could check and return NaN if minimal impact on performance.
*/
for (int i = 0; i < a->nnz; i++)
{
int ai = a->indices[i];
int bi = -1;
for (int j = bpos; j < b->nnz; j++)
{
bi = b->indices[j];
if (ai == bi)
{
num += ax[i] < bx[j] ? ax[i] : bx[j];
denom += ax[i] > bx[j] ? ax[i] : bx[j];
}
else if (ai > bi)
denom += bx[j];
/* Update start for next iteration */
if (ai >= bi)
bpos = j + 1;
/* Found or passed it */
if (bi >= ai)
break;
}
if (ai != bi)
denom += ax[i];
}
for (int j = bpos; j < b->nnz; j++)
denom += bx[j];
if (denom > 0)
PG_RETURN_FLOAT8(1.0 - (num / denom));
else
PG_RETURN_FLOAT8(NAN);
}

View File

@@ -1,23 +0,0 @@
#ifndef SVECTOR_H
#define SVECTOR_H
#define SVECTOR_MAX_DIM 100000
#define SVECTOR_SIZE(_nnz) (offsetof(SVector, indices) + (_nnz) * sizeof(int32) + (_nnz * sizeof(float)))
#define SVECTOR_VALUES(x) ((float *) (((char *) (x)) + offsetof(SVector, indices) + (x)->nnz * sizeof(int32)))
#define DatumGetSVector(x) ((SVector *) PG_DETOAST_DATUM(x))
#define PG_GETARG_SVECTOR_P(x) DatumGetSVector(PG_GETARG_DATUM(x))
#define PG_RETURN_SVECTOR_P(x) PG_RETURN_POINTER(x)
typedef struct SVector
{
int32 vl_len_; /* varlena header (do not touch directly!) */
int32 dim; /* number of dimensions */
int32 nnz;
int32 unused;
int32 indices[FLEXIBLE_ARRAY_MEMBER];
} SVector;
SVector *InitSVector(int dim, int nnz);
#endif

View File

@@ -9,7 +9,6 @@
#include "lib/stringinfo.h"
#include "libpq/pqformat.h"
#include "port.h" /* for strtof() */
#include "svector.h"
#include "utils/array.h"
#include "utils/builtins.h"
#include "utils/lsyscache.h"
@@ -90,7 +89,7 @@ CheckDim(int dim)
}
/*
* Ensure finite element
* Ensure finite elements
*/
static inline void
CheckElement(float value)
@@ -438,18 +437,17 @@ vector_send(PG_FUNCTION_ARGS)
/*
* Convert vector to vector
* This is needed to check the type modifier
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(vector);
Datum
vector(PG_FUNCTION_ARGS)
{
Vector *vec = PG_GETARG_VECTOR_P(0);
Vector *arg = PG_GETARG_VECTOR_P(0);
int32 typmod = PG_GETARG_INT32(1);
CheckExpectedDim(typmod, vec->dim);
CheckExpectedDim(typmod, arg->dim);
PG_RETURN_POINTER(vec);
PG_RETURN_POINTER(arg);
}
/*
@@ -466,6 +464,7 @@ array_to_vector(PG_FUNCTION_ARGS)
bool typbyval;
char typalign;
Datum *elemsp;
bool *nullsp;
int nelemsp;
if (ARR_NDIM(array) > 1)
@@ -479,7 +478,7 @@ array_to_vector(PG_FUNCTION_ARGS)
errmsg("array must not contain nulls")));
get_typlenbyvalalign(ARR_ELEMTYPE(array), &typlen, &typbyval, &typalign);
deconstruct_array(array, ARR_ELEMTYPE(array), typlen, typbyval, typalign, &elemsp, NULL, &nelemsp);
deconstruct_array(array, ARR_ELEMTYPE(array), typlen, typbyval, typalign, &elemsp, &nullsp, &nelemsp);
CheckDim(nelemsp);
CheckExpectedDim(typmod, nelemsp);
@@ -513,12 +512,6 @@ array_to_vector(PG_FUNCTION_ARGS)
errmsg("unsupported array type")));
}
/*
* Free allocation from deconstruct_array. Do not free individual elements
* when pass-by-reference since they point to original array.
*/
pfree(elemsp);
/* Check elements */
for (int i = 0; i < result->dim; i++)
CheckElement(result->x[i]);
@@ -1152,26 +1145,3 @@ vector_avg(PG_FUNCTION_ARGS)
PG_RETURN_POINTER(result);
}
/*
* Convert sparse vector to dense vector
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(svector_to_vector);
Datum
svector_to_vector(PG_FUNCTION_ARGS)
{
SVector *svec = PG_GETARG_SVECTOR_P(0);
int32 typmod = PG_GETARG_INT32(1);
Vector *result;
int dim = svec->dim;
float *values = SVECTOR_VALUES(svec);
CheckDim(dim);
CheckExpectedDim(typmod, dim);
result = InitVector(dim);
for (int i = 0; i < svec->nnz; i++)
result->x[svec->indices[i]] = values[i];
PG_RETURN_POINTER(result);
}

View File

@@ -54,85 +54,85 @@ SELECT vector_norm('[3e37,4e37]')::real;
5e+37
(1 row)
SELECT l2_distance('[0,0]'::vector, '[3,4]');
SELECT l2_distance('[0,0]', '[3,4]');
l2_distance
-------------
5
(1 row)
SELECT l2_distance('[0,0]'::vector, '[0,1]');
SELECT l2_distance('[0,0]', '[0,1]');
l2_distance
-------------
1
(1 row)
SELECT l2_distance('[1,2]'::vector, '[3]');
SELECT l2_distance('[1,2]', '[3]');
ERROR: different vector dimensions 2 and 1
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
SELECT l2_distance('[3e38]', '[-3e38]');
l2_distance
-------------
Infinity
(1 row)
SELECT inner_product('[1,2]'::vector, '[3,4]');
SELECT inner_product('[1,2]', '[3,4]');
inner_product
---------------
11
(1 row)
SELECT inner_product('[1,2]'::vector, '[3]');
SELECT inner_product('[1,2]', '[3]');
ERROR: different vector dimensions 2 and 1
SELECT inner_product('[3e38]'::vector, '[3e38]');
SELECT inner_product('[3e38]', '[3e38]');
inner_product
---------------
Infinity
(1 row)
SELECT cosine_distance('[1,2]'::vector, '[2,4]');
SELECT cosine_distance('[1,2]', '[2,4]');
cosine_distance
-----------------
0
(1 row)
SELECT cosine_distance('[1,2]'::vector, '[0,0]');
SELECT cosine_distance('[1,2]', '[0,0]');
cosine_distance
-----------------
NaN
(1 row)
SELECT cosine_distance('[1,1]'::vector, '[1,1]');
SELECT cosine_distance('[1,1]', '[1,1]');
cosine_distance
-----------------
0
(1 row)
SELECT cosine_distance('[1,0]'::vector, '[0,2]');
SELECT cosine_distance('[1,0]', '[0,2]');
cosine_distance
-----------------
1
(1 row)
SELECT cosine_distance('[1,1]'::vector, '[-1,-1]');
SELECT cosine_distance('[1,1]', '[-1,-1]');
cosine_distance
-----------------
2
(1 row)
SELECT cosine_distance('[1,2]'::vector, '[3]');
SELECT cosine_distance('[1,2]', '[3]');
ERROR: different vector dimensions 2 and 1
SELECT cosine_distance('[1,1]'::vector, '[1.1,1.1]');
SELECT cosine_distance('[1,1]', '[1.1,1.1]');
cosine_distance
-----------------
0
(1 row)
SELECT cosine_distance('[1,1]'::vector, '[-1.1,-1.1]');
SELECT cosine_distance('[1,1]', '[-1.1,-1.1]');
cosine_distance
-----------------
2
(1 row)
SELECT cosine_distance('[3e38]'::vector, '[3e38]');
SELECT cosine_distance('[3e38]', '[3e38]');
cosine_distance
-----------------
NaN

View File

@@ -1,140 +0,0 @@
SELECT '(0,1.5),(2,3.5)|5|'::svector;
svector
--------------------
(0,1.5),(2,3.5)|5|
(1 row)
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector;
vector
-----------------
[1.5,0,3.5,0,0]
(1 row)
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector(5);
vector
-----------------
[1.5,0,3.5,0,0]
(1 row)
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector(4);
ERROR: expected 4 dimensions, not 5
SELECT '[0,1.5,0,3.5,0]'::vector::svector;
svector
--------------------
(1,1.5),(3,3.5)|5|
(1 row)
SELECT '(0,0),(1,1),(2,0)|3|'::svector;
svector
----------------------
(0,0),(1,1),(2,0)|3|
(1 row)
SELECT '|5|'::svector;
svector
---------
|5|
(1 row)
SELECT '|-1|'::svector;
ERROR: svector must have at least 1 dimension
LINE 1: SELECT '|-1|'::svector;
^
SELECT '|100001|'::svector;
ERROR: svector cannot have more than 100000 dimensions
LINE 1: SELECT '|100001|'::svector;
^
SELECT '|16001|'::svector::vector;
ERROR: vector cannot have more than 16000 dimensions
SELECT '(-1,1)|1|'::svector;
ERROR: index must not be negative
LINE 1: SELECT '(-1,1)|1|'::svector;
^
SELECT '(1,1)|1|'::svector;
ERROR: index must be less than dimensions
LINE 1: SELECT '(1,1)|1|'::svector;
^
SELECT '|1|'::svector(2);
ERROR: expected 2 dimensions, not 1
SELECT l2_distance('|2|'::svector, '(0,3),(1,4)|2|');
l2_distance
-------------
5
(1 row)
SELECT l2_distance('|2|'::svector, '(1,1)|2|');
l2_distance
-------------
1
(1 row)
SELECT '|2|'::svector <-> '(0,3),(1,4)|2|';
?column?
----------
5
(1 row)
SELECT inner_product('(0,1),(1,2)|2|'::svector, '(0,2),(1,4)|2|');
inner_product
---------------
10
(1 row)
SELECT svector_negative_inner_product('(0,1),(1,2)|2|', '(0,2),(1,4)|2|');
svector_negative_inner_product
--------------------------------
-10
(1 row)
SELECT cosine_distance('(0,1),(1,2)|2|'::svector, '(0,2),(1,4)|2|');
cosine_distance
-----------------
0
(1 row)
SELECT cosine_distance('(0,1),(1,2)|2|'::svector, '|2|');
cosine_distance
-----------------
NaN
(1 row)
SELECT cosine_distance('(0,1),(1,1)|2|'::svector, '(0,-1),(1,-1)|2|');
cosine_distance
-----------------
2
(1 row)
SELECT cosine_distance('(0,1)|2|'::svector, '(1,2)|2|');
cosine_distance
-----------------
1
(1 row)
SELECT cosine_distance('|1|'::svector, '|1|');
cosine_distance
-----------------
NaN
(1 row)
SELECT cosine_distance('(0,1)|2|'::svector, '(0,1)|3|');
ERROR: different svector dimensions 2 and 3
SELECT jaccard_distance('(0,1)|2|', '(0,1)|2|');
jaccard_distance
------------------
0
(1 row)
SELECT jaccard_distance('(0,1)|2|', '(1,1)|2|');
jaccard_distance
------------------
1
(1 row)
SELECT jaccard_distance('|1|', '|1|');
jaccard_distance
------------------
NaN
(1 row)
SELECT jaccard_distance('(0,1)|2|', '(0,1)|3|');
ERROR: different svector dimensions 2 and 3

View File

@@ -13,24 +13,24 @@ SELECT vector_norm('[3,4]');
SELECT vector_norm('[0,1]');
SELECT vector_norm('[3e37,4e37]')::real;
SELECT l2_distance('[0,0]'::vector, '[3,4]');
SELECT l2_distance('[0,0]'::vector, '[0,1]');
SELECT l2_distance('[1,2]'::vector, '[3]');
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
SELECT l2_distance('[0,0]', '[3,4]');
SELECT l2_distance('[0,0]', '[0,1]');
SELECT l2_distance('[1,2]', '[3]');
SELECT l2_distance('[3e38]', '[-3e38]');
SELECT inner_product('[1,2]'::vector, '[3,4]');
SELECT inner_product('[1,2]'::vector, '[3]');
SELECT inner_product('[3e38]'::vector, '[3e38]');
SELECT inner_product('[1,2]', '[3,4]');
SELECT inner_product('[1,2]', '[3]');
SELECT inner_product('[3e38]', '[3e38]');
SELECT cosine_distance('[1,2]'::vector, '[2,4]');
SELECT cosine_distance('[1,2]'::vector, '[0,0]');
SELECT cosine_distance('[1,1]'::vector, '[1,1]');
SELECT cosine_distance('[1,0]'::vector, '[0,2]');
SELECT cosine_distance('[1,1]'::vector, '[-1,-1]');
SELECT cosine_distance('[1,2]'::vector, '[3]');
SELECT cosine_distance('[1,1]'::vector, '[1.1,1.1]');
SELECT cosine_distance('[1,1]'::vector, '[-1.1,-1.1]');
SELECT cosine_distance('[3e38]'::vector, '[3e38]');
SELECT cosine_distance('[1,2]', '[2,4]');
SELECT cosine_distance('[1,2]', '[0,0]');
SELECT cosine_distance('[1,1]', '[1,1]');
SELECT cosine_distance('[1,0]', '[0,2]');
SELECT cosine_distance('[1,1]', '[-1,-1]');
SELECT cosine_distance('[1,2]', '[3]');
SELECT cosine_distance('[1,1]', '[1.1,1.1]');
SELECT cosine_distance('[1,1]', '[-1.1,-1.1]');
SELECT cosine_distance('[3e38]', '[3e38]');
SELECT l1_distance('[0,0]', '[3,4]');
SELECT l1_distance('[0,0]', '[0,1]');

View File

@@ -1,36 +0,0 @@
SELECT '(0,1.5),(2,3.5)|5|'::svector;
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector;
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector(5);
SELECT '(0,1.5),(2,3.5)|5|'::svector::vector(4);
SELECT '[0,1.5,0,3.5,0]'::vector::svector;
SELECT '(0,0),(1,1),(2,0)|3|'::svector;
SELECT '|5|'::svector;
SELECT '|-1|'::svector;
SELECT '|100001|'::svector;
SELECT '|16001|'::svector::vector;
SELECT '(-1,1)|1|'::svector;
SELECT '(1,1)|1|'::svector;
SELECT '|1|'::svector(2);
SELECT l2_distance('|2|'::svector, '(0,3),(1,4)|2|');
SELECT l2_distance('|2|'::svector, '(1,1)|2|');
SELECT '|2|'::svector <-> '(0,3),(1,4)|2|';
SELECT inner_product('(0,1),(1,2)|2|'::svector, '(0,2),(1,4)|2|');
SELECT svector_negative_inner_product('(0,1),(1,2)|2|', '(0,2),(1,4)|2|');
SELECT cosine_distance('(0,1),(1,2)|2|'::svector, '(0,2),(1,4)|2|');
SELECT cosine_distance('(0,1),(1,2)|2|'::svector, '|2|');
SELECT cosine_distance('(0,1),(1,1)|2|'::svector, '(0,-1),(1,-1)|2|');
SELECT cosine_distance('(0,1)|2|'::svector, '(1,2)|2|');
SELECT cosine_distance('|1|'::svector, '|1|');
SELECT cosine_distance('(0,1)|2|'::svector, '(0,1)|3|');
SELECT jaccard_distance('(0,1)|2|', '(0,1)|2|');
SELECT jaccard_distance('(0,1)|2|', '(1,1)|2|');
SELECT jaccard_distance('|1|', '|1|');
SELECT jaccard_distance('(0,1)|2|', '(0,1)|3|');

View File

@@ -1,4 +1,4 @@
comment = 'vector data type and ivfflat and hnsw access methods'
default_version = '0.5.1'
default_version = '0.5.0'
module_pathname = '$libdir/vector'
relocatable = true