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b247b688a8 |
@@ -1,7 +1,7 @@
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|||||||
## 0.5.1 (unreleased)
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## 0.5.1 (2023-10-10)
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||||||
|
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||||||
- Improved performance of index scans for IVFFlat after updates and deletes
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- Improved performance of HNSW index builds
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||||||
- Fixed locking for index scans for HNSW
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- Added check for MVCC-compliant snapshot for index scans
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||||||
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## 0.5.0 (2023-08-28)
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## 0.5.0 (2023-08-28)
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||||||
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||||||
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|||||||
@@ -2,7 +2,7 @@
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|||||||
"name": "vector",
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"name": "vector",
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||||||
"abstract": "Open-source vector similarity search for Postgres",
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"abstract": "Open-source vector similarity search for Postgres",
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||||||
"description": "Supports L2 distance, inner product, and cosine distance",
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"description": "Supports L2 distance, inner product, and cosine distance",
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||||||
"version": "0.5.0",
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"version": "0.5.1",
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||||||
"maintainer": [
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"maintainer": [
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||||||
"Andrew Kane <andrew@ankane.org>"
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"Andrew Kane <andrew@ankane.org>"
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||||||
],
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],
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||||||
@@ -20,7 +20,7 @@
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|||||||
"vector": {
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"vector": {
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||||||
"file": "sql/vector.sql",
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"file": "sql/vector.sql",
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||||||
"docfile": "README.md",
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"docfile": "README.md",
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||||||
"version": "0.5.0",
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"version": "0.5.1",
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||||||
"abstract": "Open-source vector similarity search for Postgres"
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"abstract": "Open-source vector similarity search for Postgres"
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||||||
}
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}
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||||||
},
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},
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2
Makefile
2
Makefile
@@ -1,5 +1,5 @@
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|||||||
EXTENSION = vector
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EXTENSION = vector
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||||||
EXTVERSION = 0.5.0
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EXTVERSION = 0.5.1
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||||||
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MODULE_big = vector
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MODULE_big = vector
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||||||
DATA = $(wildcard sql/*--*.sql)
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DATA = $(wildcard sql/*--*.sql)
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|||||||
@@ -1,5 +1,5 @@
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|||||||
EXTENSION = vector
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EXTENSION = vector
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||||||
EXTVERSION = 0.5.0
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EXTVERSION = 0.5.1
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||||||
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||||||
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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||||||
HEADERS = src\vector.h
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HEADERS = src\vector.h
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||||||
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|||||||
@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
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|||||||
|
|
||||||
```sh
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```sh
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||||||
cd /tmp
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cd /tmp
|
||||||
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
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cd pgvector
|
||||||
make
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make
|
||||||
make install # may need sudo
|
make install # may need sudo
|
||||||
@@ -509,7 +509,7 @@ Then use `nmake` to build:
|
|||||||
|
|
||||||
```cmd
|
```cmd
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||||||
set "PGROOT=C:\Program Files\PostgreSQL\15"
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set "PGROOT=C:\Program Files\PostgreSQL\15"
|
||||||
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
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cd pgvector
|
||||||
nmake /F Makefile.win
|
nmake /F Makefile.win
|
||||||
nmake /F Makefile.win install
|
nmake /F Makefile.win install
|
||||||
@@ -530,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
|
|||||||
You can also build the image manually:
|
You can also build the image manually:
|
||||||
|
|
||||||
```sh
|
```sh
|
||||||
git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
|
git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
|
cd pgvector
|
||||||
docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
|
docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
|
||||||
```
|
```
|
||||||
|
|||||||
2
sql/vector--0.5.0--0.5.1.sql
Normal file
2
sql/vector--0.5.0--0.5.1.sql
Normal file
@@ -0,0 +1,2 @@
|
|||||||
|
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
|
||||||
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\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit
|
||||||
11
src/hnsw.h
11
src/hnsw.h
@@ -57,7 +57,9 @@
|
|||||||
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
|
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
|
||||||
#define PROGRESS_HNSW_PHASE_LOAD 2
|
#define PROGRESS_HNSW_PHASE_LOAD 2
|
||||||
|
|
||||||
#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
|
#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
|
||||||
|
|
||||||
|
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
|
||||||
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
||||||
|
|
||||||
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
|
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
|
||||||
@@ -96,13 +98,12 @@ typedef struct HnswElementData
|
|||||||
List *heaptids;
|
List *heaptids;
|
||||||
uint8 level;
|
uint8 level;
|
||||||
uint8 deleted;
|
uint8 deleted;
|
||||||
bool loaded;
|
|
||||||
HnswNeighborArray *neighbors;
|
HnswNeighborArray *neighbors;
|
||||||
BlockNumber blkno;
|
BlockNumber blkno;
|
||||||
OffsetNumber offno;
|
OffsetNumber offno;
|
||||||
OffsetNumber neighborOffno;
|
OffsetNumber neighborOffno;
|
||||||
BlockNumber neighborPage;
|
BlockNumber neighborPage;
|
||||||
Datum value;
|
Vector *vec;
|
||||||
} HnswElementData;
|
} HnswElementData;
|
||||||
|
|
||||||
typedef HnswElementData * HnswElement;
|
typedef HnswElementData * HnswElement;
|
||||||
@@ -111,11 +112,13 @@ typedef struct HnswCandidate
|
|||||||
{
|
{
|
||||||
HnswElement element;
|
HnswElement element;
|
||||||
float distance;
|
float distance;
|
||||||
|
bool closer;
|
||||||
} HnswCandidate;
|
} HnswCandidate;
|
||||||
|
|
||||||
typedef struct HnswNeighborArray
|
typedef struct HnswNeighborArray
|
||||||
{
|
{
|
||||||
int length;
|
int length;
|
||||||
|
bool closerSet;
|
||||||
HnswCandidate *items;
|
HnswCandidate *items;
|
||||||
} HnswNeighborArray;
|
} HnswNeighborArray;
|
||||||
|
|
||||||
@@ -201,7 +204,7 @@ typedef struct HnswElementTupleData
|
|||||||
ItemPointerData heaptids[HNSW_HEAPTIDS];
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ItemPointerData heaptids[HNSW_HEAPTIDS];
|
||||||
ItemPointerData neighbortid;
|
ItemPointerData neighbortid;
|
||||||
uint16 unused2;
|
uint16 unused2;
|
||||||
char value[FLEXIBLE_ARRAY_MEMBER];
|
Vector vec;
|
||||||
} HnswElementTupleData;
|
} HnswElementTupleData;
|
||||||
|
|
||||||
typedef HnswElementTupleData * HnswElementTuple;
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typedef HnswElementTupleData * HnswElementTuple;
|
||||||
|
|||||||
@@ -8,7 +8,6 @@
|
|||||||
#include "lib/pairingheap.h"
|
#include "lib/pairingheap.h"
|
||||||
#include "nodes/pg_list.h"
|
#include "nodes/pg_list.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
#include "utils/datum.h"
|
|
||||||
#include "utils/memutils.h"
|
#include "utils/memutils.h"
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 140000
|
#if PG_VERSION_NUM >= 140000
|
||||||
@@ -82,7 +81,6 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
|
|||||||
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(*buf);
|
|
||||||
GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
|
||||||
UnlockReleaseBuffer(*buf);
|
UnlockReleaseBuffer(*buf);
|
||||||
|
|
||||||
@@ -107,6 +105,8 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
{
|
{
|
||||||
Relation index = buildstate->index;
|
Relation index = buildstate->index;
|
||||||
ForkNumber forkNum = buildstate->forkNum;
|
ForkNumber forkNum = buildstate->forkNum;
|
||||||
|
int dimensions = buildstate->dimensions;
|
||||||
|
Size etupSize;
|
||||||
Size maxSize;
|
Size maxSize;
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
@@ -117,11 +117,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
ListCell *lc;
|
ListCell *lc;
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
maxSize = HNSW_MAX_SIZE;
|
||||||
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||||
|
|
||||||
/* Allocate once */
|
/* Allocate once */
|
||||||
etup = palloc0(maxSize);
|
etup = palloc0(etupSize);
|
||||||
ntup = palloc0(maxSize);
|
ntup = palloc0(BLCKSZ);
|
||||||
|
|
||||||
/* Prepare first page */
|
/* Prepare first page */
|
||||||
buf = HnswNewBuffer(index, forkNum);
|
buf = HnswNewBuffer(index, forkNum);
|
||||||
@@ -132,14 +133,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
foreach(lc, buildstate->elements)
|
foreach(lc, buildstate->elements)
|
||||||
{
|
{
|
||||||
HnswElement element = lfirst(lc);
|
HnswElement element = lfirst(lc);
|
||||||
Size etupSize;
|
|
||||||
Size ntupSize;
|
Size ntupSize;
|
||||||
Size combinedSize;
|
Size combinedSize;
|
||||||
|
|
||||||
HnswSetElementTuple(etup, element);
|
HnswSetElementTuple(etup, element);
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
|
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
||||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||||
|
|
||||||
@@ -179,7 +178,6 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
insertPage = BufferGetBlockNumber(buf);
|
insertPage = BufferGetBlockNumber(buf);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -227,7 +225,6 @@ CreateNeighborPages(HnswBuildState * buildstate)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -276,15 +273,18 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
|
|||||||
int m = buildstate->m;
|
int m = buildstate->m;
|
||||||
|
|
||||||
/* Detoast once for all calls */
|
/* Detoast once for all calls */
|
||||||
element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Normalize if needed */
|
/* Normalize if needed */
|
||||||
if (buildstate->normprocinfo != NULL)
|
if (buildstate->normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
|
if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
|
||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/* Copy value to element so accessible outside of memory context */
|
||||||
|
memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
|
||||||
|
|
||||||
/* Insert element in graph */
|
/* Insert element in graph */
|
||||||
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
||||||
|
|
||||||
@@ -360,6 +360,7 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
|
|
||||||
/* Allocate necessary memory outside of memory context */
|
/* Allocate necessary memory outside of memory context */
|
||||||
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
||||||
|
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
|
||||||
|
|
||||||
/* Use memory context since detoast can allocate */
|
/* Use memory context since detoast can allocate */
|
||||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||||
@@ -367,8 +368,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
/* Insert tuple */
|
/* Insert tuple */
|
||||||
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
||||||
|
|
||||||
/* Switch memory context */
|
/* Reset memory context */
|
||||||
MemoryContextSwitchTo(oldCtx);
|
MemoryContextSwitchTo(oldCtx);
|
||||||
|
MemoryContextReset(buildstate->tmpCtx);
|
||||||
|
|
||||||
/* Add outside memory context */
|
/* Add outside memory context */
|
||||||
if (dup != NULL)
|
if (dup != NULL)
|
||||||
@@ -376,16 +378,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
|
|
||||||
/* Add to buildstate or free */
|
/* Add to buildstate or free */
|
||||||
if (inserted)
|
if (inserted)
|
||||||
{
|
|
||||||
element->value = datumCopy(element->value, false, -1);
|
|
||||||
element->loaded = true;
|
|
||||||
buildstate->elements = lappend(buildstate->elements, element);
|
buildstate->elements = lappend(buildstate->elements, element);
|
||||||
}
|
|
||||||
else
|
else
|
||||||
HnswFreeElement(element);
|
HnswFreeElement(element);
|
||||||
|
|
||||||
/* Reset memory context */
|
|
||||||
MemoryContextReset(buildstate->tmpCtx);
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
|
|||||||
@@ -123,6 +123,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
Size minCombinedSize;
|
Size minCombinedSize;
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
BlockNumber currentPage = insertPage;
|
BlockNumber currentPage = insertPage;
|
||||||
|
int dimensions = e->vec->dim;
|
||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
Buffer nbuf;
|
Buffer nbuf;
|
||||||
Page npage;
|
Page npage;
|
||||||
@@ -131,10 +132,10 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
maxSize = HNSW_MAX_SIZE;
|
||||||
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
||||||
|
|
||||||
/* Prepare element tuple */
|
/* Prepare element tuple */
|
||||||
@@ -201,8 +202,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(newbuf);
|
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
@@ -269,9 +268,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
if (nbuf != buf)
|
|
||||||
MarkBufferDirty(nbuf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
@@ -390,7 +386,6 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
@@ -410,7 +405,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
int i;
|
int i;
|
||||||
|
|
||||||
@@ -444,7 +439,6 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -521,7 +515,7 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
|||||||
|
|
||||||
/* Create an element */
|
/* Create an element */
|
||||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||||
element->value = value;
|
element->vec = DatumGetVector(value);
|
||||||
|
|
||||||
/* Prevent concurrent inserts when likely updating entry point */
|
/* Prevent concurrent inserts when likely updating entry point */
|
||||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||||
|
|||||||
@@ -113,12 +113,6 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
|
|
||||||
scan->opaque = so;
|
scan->opaque = so;
|
||||||
|
|
||||||
/*
|
|
||||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
|
||||||
* before marking tuples as deleted.
|
|
||||||
*/
|
|
||||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
|
||||||
|
|
||||||
return scan;
|
return scan;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -166,11 +160,25 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan hnsw index without order");
|
elog(ERROR, "cannot scan hnsw index without order");
|
||||||
|
|
||||||
|
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
|
||||||
|
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||||
|
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||||
|
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
|
||||||
|
|
||||||
/* Get scan value */
|
/* Get scan value */
|
||||||
value = GetScanValue(scan);
|
value = GetScanValue(scan);
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||||
|
* before marking tuples as deleted.
|
||||||
|
*/
|
||||||
|
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||||
|
|
||||||
so->w = GetScanItems(scan, value);
|
so->w = GetScanItems(scan, value);
|
||||||
|
|
||||||
|
/* Release shared lock */
|
||||||
|
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||||
|
|
||||||
so->first = false;
|
so->first = false;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -198,15 +206,6 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *heaptid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
/*
|
|
||||||
* Typically, an index scan must maintain a pin on the index page
|
|
||||||
* holding the item last returned by amgettuple. However, this is not
|
|
||||||
* needed with the current vacuum strategy, which ensures scans do not
|
|
||||||
* visit tuples in danger of being marked as deleted.
|
|
||||||
*
|
|
||||||
* https://www.postgresql.org/docs/current/index-locking.html
|
|
||||||
*/
|
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
@@ -223,9 +222,6 @@ hnswendscan(IndexScanDesc scan)
|
|||||||
{
|
{
|
||||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||||
|
|
||||||
/* Release shared lock */
|
|
||||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
|
||||||
|
|
||||||
MemoryContextDelete(so->tmpCtx);
|
MemoryContextDelete(so->tmpCtx);
|
||||||
|
|
||||||
pfree(so);
|
pfree(so);
|
||||||
|
|||||||
144
src/hnswutils.c
144
src/hnswutils.c
@@ -4,7 +4,6 @@
|
|||||||
|
|
||||||
#include "hnsw.h"
|
#include "hnsw.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
#include "utils/datum.h"
|
|
||||||
#include "vector.h"
|
#include "vector.h"
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -118,7 +117,6 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
|||||||
void
|
void
|
||||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -141,6 +139,7 @@ HnswInitNeighbors(HnswElement element, int m)
|
|||||||
a = &element->neighbors[lc];
|
a = &element->neighbors[lc];
|
||||||
a->length = 0;
|
a->length = 0;
|
||||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||||
|
a->closerSet = false;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -188,8 +187,7 @@ HnswFreeElement(HnswElement element)
|
|||||||
{
|
{
|
||||||
HnswFreeNeighbors(element);
|
HnswFreeNeighbors(element);
|
||||||
list_free_deep(element->heaptids);
|
list_free_deep(element->heaptids);
|
||||||
if (element->loaded)
|
pfree(element->vec);
|
||||||
pfree(DatumGetPointer(element->value));
|
|
||||||
pfree(element);
|
pfree(element);
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -216,7 +214,7 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
|||||||
element->blkno = blkno;
|
element->blkno = blkno;
|
||||||
element->offno = offno;
|
element->offno = offno;
|
||||||
element->neighbors = NULL;
|
element->neighbors = NULL;
|
||||||
element->loaded = false;
|
element->vec = NULL;
|
||||||
return element;
|
return element;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -326,7 +324,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
|||||||
else
|
else
|
||||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||||
}
|
}
|
||||||
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -449,10 +447,8 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
|||||||
|
|
||||||
if (loadVec)
|
if (loadVec)
|
||||||
{
|
{
|
||||||
Datum value = PointerGetDatum(&etup->value);
|
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
||||||
|
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
||||||
element->value = datumCopy(value, false, -1);
|
|
||||||
element->loaded = true;
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -480,7 +476,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
|||||||
|
|
||||||
/* Calculate distance */
|
/* Calculate distance */
|
||||||
if (distance != NULL)
|
if (distance != NULL)
|
||||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
||||||
|
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -491,7 +487,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
|||||||
static float
|
static float
|
||||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||||
{
|
{
|
||||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -697,6 +693,34 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
|||||||
return w;
|
return w;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Compare candidate distances
|
||||||
|
*/
|
||||||
|
static int
|
||||||
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||||
|
#else
|
||||||
|
CompareCandidateDistances(const void *a, const void *b)
|
||||||
|
#endif
|
||||||
|
{
|
||||||
|
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||||
|
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||||
|
|
||||||
|
if (hca->distance < hcb->distance)
|
||||||
|
return 1;
|
||||||
|
|
||||||
|
if (hca->distance > hcb->distance)
|
||||||
|
return -1;
|
||||||
|
|
||||||
|
if (hca->element < hcb->element)
|
||||||
|
return 1;
|
||||||
|
|
||||||
|
if (hca->element > hcb->element)
|
||||||
|
return -1;
|
||||||
|
|
||||||
|
return 0;
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Calculate the distance between elements
|
* Calculate the distance between elements
|
||||||
*/
|
*/
|
||||||
@@ -726,7 +750,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -753,33 +777,77 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
|||||||
* Algorithm 4 from paper
|
* Algorithm 4 from paper
|
||||||
*/
|
*/
|
||||||
static List *
|
static List *
|
||||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
|
||||||
{
|
{
|
||||||
List *r = NIL;
|
List *r = NIL;
|
||||||
List *w = list_copy(c);
|
List *w = list_copy(c);
|
||||||
pairingheap *wd;
|
pairingheap *wd;
|
||||||
|
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
||||||
|
List *added = NIL;
|
||||||
|
bool removedAny = false;
|
||||||
|
|
||||||
if (list_length(w) <= m)
|
if (list_length(w) <= m)
|
||||||
return w;
|
return w;
|
||||||
|
|
||||||
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
||||||
|
|
||||||
|
/* Ensure order of candidates is deterministic for closer caching */
|
||||||
|
if (sortCandidates)
|
||||||
|
list_sort(w, CompareCandidateDistances);
|
||||||
|
|
||||||
while (list_length(w) > 0 && list_length(r) < m)
|
while (list_length(w) > 0 && list_length(r) < m)
|
||||||
{
|
{
|
||||||
/* Assumes w is already ordered desc */
|
/* Assumes w is already ordered desc */
|
||||||
HnswCandidate *e = llast(w);
|
HnswCandidate *e = llast(w);
|
||||||
bool closer;
|
|
||||||
|
|
||||||
w = list_delete_last(w);
|
w = list_delete_last(w);
|
||||||
|
|
||||||
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
/* Use previous state of r and wd to skip work when possible */
|
||||||
|
if (mustCalculate)
|
||||||
|
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||||
|
else if (list_length(added) > 0)
|
||||||
|
{
|
||||||
|
/*
|
||||||
|
* If the current candidate was closer, we only need to compare it
|
||||||
|
* with the other candidates that we have added.
|
||||||
|
*/
|
||||||
|
if (e->closer)
|
||||||
|
{
|
||||||
|
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
|
||||||
|
|
||||||
if (closer)
|
if (!e->closer)
|
||||||
|
removedAny = true;
|
||||||
|
}
|
||||||
|
else
|
||||||
|
{
|
||||||
|
/*
|
||||||
|
* If we have removed any candidates from closer, a candidate
|
||||||
|
* that was not closer earlier might now be.
|
||||||
|
*/
|
||||||
|
if (removedAny)
|
||||||
|
{
|
||||||
|
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||||
|
if (e->closer)
|
||||||
|
added = lappend(added, e);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
else if (e == newCandidate)
|
||||||
|
{
|
||||||
|
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||||
|
if (e->closer)
|
||||||
|
added = lappend(added, e);
|
||||||
|
}
|
||||||
|
|
||||||
|
if (e->closer)
|
||||||
r = lappend(r, e);
|
r = lappend(r, e);
|
||||||
else
|
else
|
||||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/* Cached value can only be used in future if sorted deterministically */
|
||||||
|
e2->neighbors[lc].closerSet = sortCandidates;
|
||||||
|
|
||||||
/* Keep pruned connections */
|
/* Keep pruned connections */
|
||||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||||
@@ -809,7 +877,7 @@ HnswFindDuplicate(HnswElement e)
|
|||||||
HnswCandidate *neighbor = &neighbors->items[i];
|
HnswCandidate *neighbor = &neighbors->items[i];
|
||||||
|
|
||||||
/* Exit early since ordered by distance */
|
/* Exit early since ordered by distance */
|
||||||
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
||||||
break;
|
break;
|
||||||
|
|
||||||
/* Check for space */
|
/* Check for space */
|
||||||
@@ -833,28 +901,6 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
|
|||||||
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Compare candidate distances
|
|
||||||
*/
|
|
||||||
static int
|
|
||||||
#if PG_VERSION_NUM >= 130000
|
|
||||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
|
||||||
#else
|
|
||||||
CompareCandidateDistances(const void *a, const void *b)
|
|
||||||
#endif
|
|
||||||
{
|
|
||||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
|
||||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
|
||||||
|
|
||||||
if (hca->distance < hcb->distance)
|
|
||||||
return 1;
|
|
||||||
|
|
||||||
if (hca->distance > hcb->distance)
|
|
||||||
return -1;
|
|
||||||
|
|
||||||
return 0;
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Update connections
|
* Update connections
|
||||||
*/
|
*/
|
||||||
@@ -884,13 +930,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
|||||||
/* Load elements on insert */
|
/* Load elements on insert */
|
||||||
if (index != NULL)
|
if (index != NULL)
|
||||||
{
|
{
|
||||||
Datum q = hc->element->value;
|
Datum q = PointerGetDatum(hc->element->vec);
|
||||||
|
|
||||||
for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
|
||||||
{
|
{
|
||||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||||
|
|
||||||
if (!hc3->element->loaded)
|
if (hc3->element->vec == NULL)
|
||||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||||
else
|
else
|
||||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||||
@@ -908,13 +954,12 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
|||||||
{
|
{
|
||||||
List *c = NIL;
|
List *c = NIL;
|
||||||
|
|
||||||
/* Add and sort candidates */
|
/* Add candidates */
|
||||||
for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
|
||||||
c = lappend(c, ¤tNeighbors->items[i]);
|
c = lappend(c, ¤tNeighbors->items[i]);
|
||||||
c = lappend(c, &hc2);
|
c = lappend(c, &hc2);
|
||||||
list_sort(c, CompareCandidateDistances);
|
|
||||||
|
|
||||||
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
|
||||||
|
|
||||||
/* Should not happen */
|
/* Should not happen */
|
||||||
if (pruned == NULL)
|
if (pruned == NULL)
|
||||||
@@ -972,7 +1017,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
List *w;
|
List *w;
|
||||||
int level = element->level;
|
int level = element->level;
|
||||||
int entryLevel;
|
int entryLevel;
|
||||||
Datum q = element->value;
|
Datum q = PointerGetDatum(element->vec);
|
||||||
HnswElement skipElement = existing ? element : NULL;
|
HnswElement skipElement = existing ? element : NULL;
|
||||||
|
|
||||||
/* No neighbors if no entry point */
|
/* No neighbors if no entry point */
|
||||||
@@ -1013,7 +1058,12 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
else
|
else
|
||||||
lw = w;
|
lw = w;
|
||||||
|
|
||||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
/*
|
||||||
|
* Candidates are sorted, but not deterministically. Could set
|
||||||
|
* sortCandidates to true for in-memory builds to enable closer
|
||||||
|
* caching, but there does not seem to be a difference in performance.
|
||||||
|
*/
|
||||||
|
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
|
||||||
|
|
||||||
AddConnections(element, neighbors, lm, lc);
|
AddConnections(element, neighbors, lm, lc);
|
||||||
|
|
||||||
|
|||||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
|||||||
|
|
||||||
if (itemUpdated)
|
if (itemUpdated)
|
||||||
{
|
{
|
||||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||||
|
|
||||||
/* Mark rest as invalid */
|
/* Mark rest as invalid */
|
||||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||||
@@ -128,10 +128,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
|||||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||||
|
|
||||||
if (updated)
|
if (updated)
|
||||||
{
|
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
|
||||||
else
|
else
|
||||||
GenericXLogAbort(state);
|
GenericXLogAbort(state);
|
||||||
|
|
||||||
@@ -229,7 +226,6 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -485,7 +481,6 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
Size etupSize;
|
Size etupSize;
|
||||||
Size ntupSize;
|
Size ntupSize;
|
||||||
Datum value;
|
|
||||||
Buffer nbuf;
|
Buffer nbuf;
|
||||||
Page npage;
|
Page npage;
|
||||||
BlockNumber neighborPage;
|
BlockNumber neighborPage;
|
||||||
@@ -509,11 +504,8 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
/* Get datum */
|
|
||||||
value = PointerGetDatum(&etup->value);
|
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||||
|
|
||||||
/* Get neighbor page */
|
/* Get neighbor page */
|
||||||
@@ -536,7 +528,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
|
|
||||||
/* Overwrite element */
|
/* Overwrite element */
|
||||||
etup->deleted = 1;
|
etup->deleted = 1;
|
||||||
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
||||||
|
|
||||||
/* Overwrite neighbors */
|
/* Overwrite neighbors */
|
||||||
for (int i = 0; i < ntup->count; i++)
|
for (int i = 0; i < ntup->count; i++)
|
||||||
@@ -551,9 +543,6 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(buf);
|
|
||||||
if (nbuf != buf)
|
|
||||||
MarkBufferDirty(nbuf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
UnlockReleaseBuffer(nbuf);
|
UnlockReleaseBuffer(nbuf);
|
||||||
|
|||||||
@@ -11,6 +11,7 @@
|
|||||||
#include "miscadmin.h"
|
#include "miscadmin.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
#include "tcop/tcopprot.h"
|
#include "tcop/tcopprot.h"
|
||||||
|
#include "utils/datum.h"
|
||||||
#include "utils/memutils.h"
|
#include "utils/memutils.h"
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 140000
|
#if PG_VERSION_NUM >= 140000
|
||||||
@@ -65,11 +66,18 @@
|
|||||||
static void
|
static void
|
||||||
AddSample(Datum *values, IvfflatBuildState * buildstate)
|
AddSample(Datum *values, IvfflatBuildState * buildstate)
|
||||||
{
|
{
|
||||||
VectorArray samples = buildstate->samples;
|
MemoryContext oldCtx;
|
||||||
int targsamples = samples->maxlen;
|
Datum value;
|
||||||
|
int targsamples = buildstate->targsamples;
|
||||||
|
|
||||||
|
/* Use memory context since detoast can allocate */
|
||||||
|
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||||
|
|
||||||
/* Detoast once for all calls */
|
/* Detoast once for all calls */
|
||||||
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
|
/* Restore memory context */
|
||||||
|
MemoryContextSwitchTo(oldCtx);
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Normalize with KMEANS_NORM_PROC since spherical distance function
|
* Normalize with KMEANS_NORM_PROC since spherical distance function
|
||||||
@@ -81,18 +89,23 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
|||||||
return;
|
return;
|
||||||
}
|
}
|
||||||
|
|
||||||
if (samples->length < targsamples)
|
/* Copy datum */
|
||||||
{
|
value = datumCopy(value, false, -1);
|
||||||
VectorArraySet(samples, samples->length, DatumGetVector(value));
|
|
||||||
samples->length++;
|
/* Reset memory context */
|
||||||
}
|
MemoryContextReset(buildstate->tmpCtx);
|
||||||
|
|
||||||
|
if (list_length(buildstate->samples) < targsamples)
|
||||||
|
buildstate->samples = lappend(buildstate->samples, DatumGetVector(value));
|
||||||
else
|
else
|
||||||
{
|
{
|
||||||
if (buildstate->rowstoskip < 0)
|
if (buildstate->rowstoskip < 0)
|
||||||
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, samples->length, targsamples);
|
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, list_length(buildstate->samples), targsamples);
|
||||||
|
|
||||||
if (buildstate->rowstoskip <= 0)
|
if (buildstate->rowstoskip <= 0)
|
||||||
{
|
{
|
||||||
|
ListCell *lc;
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 150000
|
#if PG_VERSION_NUM >= 150000
|
||||||
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
|
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
|
||||||
#else
|
#else
|
||||||
@@ -100,7 +113,8 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
|||||||
#endif
|
#endif
|
||||||
|
|
||||||
Assert(k >= 0 && k < targsamples);
|
Assert(k >= 0 && k < targsamples);
|
||||||
VectorArraySet(samples, k, DatumGetVector(value));
|
lc = list_nth_cell(buildstate->samples, k);
|
||||||
|
lfirst(lc) = DatumGetVector(value);
|
||||||
}
|
}
|
||||||
|
|
||||||
buildstate->rowstoskip -= 1;
|
buildstate->rowstoskip -= 1;
|
||||||
@@ -115,21 +129,13 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
bool *isnull, bool tupleIsAlive, void *state)
|
bool *isnull, bool tupleIsAlive, void *state)
|
||||||
{
|
{
|
||||||
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
|
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
|
||||||
MemoryContext oldCtx;
|
|
||||||
|
|
||||||
/* Skip nulls */
|
/* Skip nulls */
|
||||||
if (isnull[0])
|
if (isnull[0])
|
||||||
return;
|
return;
|
||||||
|
|
||||||
/* Use memory context since detoast can allocate */
|
|
||||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
|
||||||
|
|
||||||
/* Add sample */
|
/* Add sample */
|
||||||
AddSample(values, state);
|
AddSample(values, buildstate);
|
||||||
|
|
||||||
/* Reset memory context */
|
|
||||||
MemoryContextSwitchTo(oldCtx);
|
|
||||||
MemoryContextReset(buildstate->tmpCtx);
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -138,7 +144,7 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
static void
|
static void
|
||||||
SampleRows(IvfflatBuildState * buildstate)
|
SampleRows(IvfflatBuildState * buildstate)
|
||||||
{
|
{
|
||||||
int targsamples = buildstate->samples->maxlen;
|
int targsamples = buildstate->targsamples;
|
||||||
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
|
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
|
||||||
|
|
||||||
buildstate->rowstoskip = -1;
|
buildstate->rowstoskip = -1;
|
||||||
@@ -449,12 +455,13 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
|||||||
|
|
||||||
/* Sample rows */
|
/* Sample rows */
|
||||||
/* TODO Ensure within maintenance_work_mem */
|
/* TODO Ensure within maintenance_work_mem */
|
||||||
buildstate->samples = VectorArrayInit(numSamples, buildstate->dimensions);
|
buildstate->samples = NIL;
|
||||||
|
buildstate->targsamples = numSamples;
|
||||||
if (buildstate->heap != NULL)
|
if (buildstate->heap != NULL)
|
||||||
{
|
{
|
||||||
SampleRows(buildstate);
|
SampleRows(buildstate);
|
||||||
|
|
||||||
if (buildstate->samples->length < buildstate->lists)
|
if (list_length(buildstate->samples) < buildstate->lists)
|
||||||
{
|
{
|
||||||
ereport(NOTICE,
|
ereport(NOTICE,
|
||||||
(errmsg("ivfflat index created with little data"),
|
(errmsg("ivfflat index created with little data"),
|
||||||
@@ -467,7 +474,7 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
|||||||
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
|
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
|
||||||
|
|
||||||
/* Free samples before we allocate more memory */
|
/* Free samples before we allocate more memory */
|
||||||
VectorArrayFree(buildstate->samples);
|
list_free_deep(buildstate->samples);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -506,9 +513,11 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
|
Size listSize;
|
||||||
IvfflatList list;
|
IvfflatList list;
|
||||||
|
|
||||||
list = palloc0(BLCKSZ);
|
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||||
|
list = palloc(listSize);
|
||||||
|
|
||||||
buf = IvfflatNewBuffer(index, forkNum);
|
buf = IvfflatNewBuffer(index, forkNum);
|
||||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||||
@@ -516,13 +525,11 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
|||||||
for (int i = 0; i < lists; i++)
|
for (int i = 0; i < lists; i++)
|
||||||
{
|
{
|
||||||
OffsetNumber offno;
|
OffsetNumber offno;
|
||||||
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
|
|
||||||
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
|
|
||||||
|
|
||||||
/* Load list */
|
/* Load list */
|
||||||
list->startPage = InvalidBlockNumber;
|
list->startPage = InvalidBlockNumber;
|
||||||
list->insertPage = InvalidBlockNumber;
|
list->insertPage = InvalidBlockNumber;
|
||||||
memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
|
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||||
|
|
||||||
/* Ensure free space */
|
/* Ensure free space */
|
||||||
if (PageGetFreeSpace(page) < listSize)
|
if (PageGetFreeSpace(page) < listSize)
|
||||||
|
|||||||
@@ -52,7 +52,7 @@
|
|||||||
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
||||||
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
||||||
|
|
||||||
#define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
|
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim))
|
||||||
|
|
||||||
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
||||||
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
||||||
@@ -80,6 +80,10 @@
|
|||||||
#define RandomInt() random()
|
#define RandomInt() random()
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
#if PG_VERSION_NUM < 130000
|
||||||
|
#define list_sort(list, cmp) list_qsort(list, cmp)
|
||||||
|
#endif
|
||||||
|
|
||||||
/* Variables */
|
/* Variables */
|
||||||
extern int ivfflat_probes;
|
extern int ivfflat_probes;
|
||||||
|
|
||||||
@@ -178,7 +182,8 @@ typedef struct IvfflatBuildState
|
|||||||
Oid collation;
|
Oid collation;
|
||||||
|
|
||||||
/* Variables */
|
/* Variables */
|
||||||
VectorArray samples;
|
List *samples;
|
||||||
|
int targsamples;
|
||||||
VectorArray centers;
|
VectorArray centers;
|
||||||
ListInfo *listInfo;
|
ListInfo *listInfo;
|
||||||
Vector *normvec;
|
Vector *normvec;
|
||||||
@@ -229,7 +234,7 @@ typedef struct IvfflatListData
|
|||||||
{
|
{
|
||||||
BlockNumber startPage;
|
BlockNumber startPage;
|
||||||
BlockNumber insertPage;
|
BlockNumber insertPage;
|
||||||
char center[FLEXIBLE_ARRAY_MEMBER];
|
Vector center;
|
||||||
} IvfflatListData;
|
} IvfflatListData;
|
||||||
|
|
||||||
typedef IvfflatListData * IvfflatList;
|
typedef IvfflatListData * IvfflatList;
|
||||||
@@ -246,8 +251,6 @@ typedef struct IvfflatScanOpaqueData
|
|||||||
int probes;
|
int probes;
|
||||||
int dimensions;
|
int dimensions;
|
||||||
bool first;
|
bool first;
|
||||||
Buffer buf;
|
|
||||||
ItemPointerData heaptid;
|
|
||||||
|
|
||||||
/* Sorting */
|
/* Sorting */
|
||||||
Tuplesortstate *sortstate;
|
Tuplesortstate *sortstate;
|
||||||
@@ -276,7 +279,7 @@ typedef IvfflatScanOpaqueData * IvfflatScanOpaque;
|
|||||||
VectorArray VectorArrayInit(int maxlen, int dimensions);
|
VectorArray VectorArrayInit(int maxlen, int dimensions);
|
||||||
void VectorArrayFree(VectorArray arr);
|
void VectorArrayFree(VectorArray arr);
|
||||||
void PrintVectorArray(char *msg, VectorArray arr);
|
void PrintVectorArray(char *msg, VectorArray arr);
|
||||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
void IvfflatKmeans(Relation index, List *samples, VectorArray centers);
|
||||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
||||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
int IvfflatGetLists(Relation index);
|
int IvfflatGetLists(Relation index);
|
||||||
|
|||||||
@@ -99,7 +99,7 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
|
|
||||||
/* Get tuple size */
|
/* Get tuple size */
|
||||||
itemsz = MAXALIGN(IndexTupleSize(itup));
|
itemsz = MAXALIGN(IndexTupleSize(itup));
|
||||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
|
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
|
||||||
|
|
||||||
/* Find a page to insert the item */
|
/* Find a page to insert the item */
|
||||||
for (;;)
|
for (;;)
|
||||||
@@ -142,8 +142,6 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(newbuf);
|
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
|
|||||||
@@ -12,20 +12,20 @@
|
|||||||
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
|
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
InitCenters(Relation index, VectorArray samples, VectorArray centers, float *lowerBound)
|
InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBound)
|
||||||
{
|
{
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
int64 j;
|
int64 j;
|
||||||
float *weight = palloc(samples->length * sizeof(float));
|
float *weight = palloc(list_length(samples) * sizeof(float));
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = samples->length;
|
int numSamples = list_length(samples);
|
||||||
|
|
||||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
|
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
|
||||||
collation = index->rd_indcollation[0];
|
collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
/* Choose an initial center uniformly at random */
|
/* Choose an initial center uniformly at random */
|
||||||
VectorArraySet(centers, 0, VectorArrayGet(samples, RandomInt() % samples->length));
|
VectorArraySet(centers, 0, list_nth(samples, RandomInt() % list_length(samples)));
|
||||||
centers->length++;
|
centers->length++;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
@@ -42,7 +42,7 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(samples, j);
|
Vector *vec = list_nth(samples, j);
|
||||||
double distance;
|
double distance;
|
||||||
|
|
||||||
/* Only need to compute distance for new center */
|
/* Only need to compute distance for new center */
|
||||||
@@ -74,7 +74,7 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
|
|
||||||
VectorArraySet(centers, i + 1, VectorArrayGet(samples, j));
|
VectorArraySet(centers, i + 1, list_nth(samples, j));
|
||||||
centers->length++;
|
centers->length++;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -106,25 +106,41 @@ CompareVectors(const void *a, const void *b)
|
|||||||
return vector_cmp_internal((Vector *) a, (Vector *) b);
|
return vector_cmp_internal((Vector *) a, (Vector *) b);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Compare list vectors
|
||||||
|
*/
|
||||||
|
static int
|
||||||
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
CompareListVectors(const ListCell *a, const ListCell *b)
|
||||||
|
#else
|
||||||
|
CompareListVectors(const void *a, const void *b)
|
||||||
|
#endif
|
||||||
|
{
|
||||||
|
Vector *va = lfirst((ListCell *) a);
|
||||||
|
Vector *vb = lfirst((ListCell *) b);
|
||||||
|
|
||||||
|
return CompareVectors(va, vb);
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Quick approach if we have little data
|
* Quick approach if we have little data
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
QuickCenters(Relation index, List *samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
Oid collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||||
|
|
||||||
/* Copy existing vectors while avoiding duplicates */
|
/* Copy existing vectors while avoiding duplicates */
|
||||||
if (samples->length > 0)
|
if (list_length(samples) > 0)
|
||||||
{
|
{
|
||||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
list_sort(samples, CompareListVectors);
|
||||||
for (int i = 0; i < samples->length; i++)
|
for (int i = 0; i < list_length(samples); i++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(samples, i);
|
Vector *vec = list_nth(samples, i);
|
||||||
|
|
||||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
if (i == 0 || CompareVectors(vec, list_nth(samples, i - 1)) != 0)
|
||||||
{
|
{
|
||||||
VectorArraySet(centers, centers->length, vec);
|
VectorArraySet(centers, centers->length, vec);
|
||||||
centers->length++;
|
centers->length++;
|
||||||
@@ -160,7 +176,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
|
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
@@ -171,7 +187,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
int64 k;
|
int64 k;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = samples->length;
|
int numSamples = list_length(samples);
|
||||||
VectorArray newCenters;
|
VectorArray newCenters;
|
||||||
int *centerCounts;
|
int *centerCounts;
|
||||||
int *closestCenters;
|
int *closestCenters;
|
||||||
@@ -182,7 +198,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
float *newcdist;
|
float *newcdist;
|
||||||
|
|
||||||
/* Calculate allocation sizes */
|
/* Calculate allocation sizes */
|
||||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
Size samplesSize = 0;
|
||||||
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
|
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
|
||||||
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
|
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
|
||||||
Size centerCountsSize = sizeof(int) * numCenters;
|
Size centerCountsSize = sizeof(int) * numCenters;
|
||||||
@@ -326,7 +342,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
|
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
vec = VectorArrayGet(samples, j);
|
vec = list_nth(samples, j);
|
||||||
|
|
||||||
/* Step 3a */
|
/* Step 3a */
|
||||||
if (rj)
|
if (rj)
|
||||||
@@ -377,7 +393,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
{
|
{
|
||||||
int closestCenter;
|
int closestCenter;
|
||||||
|
|
||||||
vec = VectorArrayGet(samples, j);
|
vec = list_nth(samples, j);
|
||||||
closestCenter = closestCenters[j];
|
closestCenter = closestCenters[j];
|
||||||
|
|
||||||
/* Increment sum and count of closest center */
|
/* Increment sum and count of closest center */
|
||||||
@@ -514,9 +530,9 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
* We use spherical k-means for inner product and cosine
|
* We use spherical k-means for inner product and cosine
|
||||||
*/
|
*/
|
||||||
void
|
void
|
||||||
IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers)
|
IvfflatKmeans(Relation index, List *samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
if (samples->length <= centers->maxlen)
|
if (list_length(samples) <= centers->maxlen)
|
||||||
QuickCenters(index, samples, centers);
|
QuickCenters(index, samples, centers);
|
||||||
else
|
else
|
||||||
ElkanKmeans(index, samples, centers);
|
ElkanKmeans(index, samples, centers);
|
||||||
|
|||||||
@@ -143,10 +143,6 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
bool isnull;
|
bool isnull;
|
||||||
ItemId itemid = PageGetItemId(page, offno);
|
ItemId itemid = PageGetItemId(page, offno);
|
||||||
|
|
||||||
/* Skip dead tuples */
|
|
||||||
if (scan->ignore_killed_tuples && ItemIdIsDead(itemid))
|
|
||||||
continue;
|
|
||||||
|
|
||||||
itup = (IndexTuple) PageGetItem(page, itemid);
|
itup = (IndexTuple) PageGetItem(page, itemid);
|
||||||
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
||||||
|
|
||||||
@@ -161,8 +157,6 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
slot->tts_isnull[0] = false;
|
slot->tts_isnull[0] = false;
|
||||||
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
||||||
slot->tts_isnull[1] = false;
|
slot->tts_isnull[1] = false;
|
||||||
slot->tts_values[2] = Int32GetDatum((int) searchPage);
|
|
||||||
slot->tts_isnull[2] = false;
|
|
||||||
ExecStoreVirtualTuple(slot);
|
ExecStoreVirtualTuple(slot);
|
||||||
|
|
||||||
tuplesort_puttupleslot(so->sortstate, slot);
|
tuplesort_puttupleslot(so->sortstate, slot);
|
||||||
@@ -187,55 +181,6 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
tuplesort_performsort(so->sortstate);
|
tuplesort_performsort(so->sortstate);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Mark prior tuple as dead
|
|
||||||
*/
|
|
||||||
static void
|
|
||||||
MarkPriorTupleDead(IndexScanDesc scan)
|
|
||||||
{
|
|
||||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
|
||||||
Buffer buf = so->buf;
|
|
||||||
Page page;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
/* Safety check */
|
|
||||||
if (!BufferIsValid(so->buf) || !ItemPointerIsValid(&so->heaptid))
|
|
||||||
return;
|
|
||||||
|
|
||||||
/* Only a shared locked is needed for ItemIdMarkDead */
|
|
||||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
|
||||||
page = BufferGetPage(buf);
|
|
||||||
maxoffno = PageGetMaxOffsetNumber(page);
|
|
||||||
|
|
||||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
|
||||||
{
|
|
||||||
ItemId itemid = PageGetItemId(page, offno);
|
|
||||||
IndexTuple itup = (IndexTuple) PageGetItem(page, itemid);
|
|
||||||
|
|
||||||
/*
|
|
||||||
* Find tuple. Since buffer has been pinned, tuple cannot have been
|
|
||||||
* vacuumed (and heap TID reused).
|
|
||||||
*/
|
|
||||||
if (ItemPointerEquals(&itup->t_tid, &so->heaptid))
|
|
||||||
{
|
|
||||||
/*
|
|
||||||
* Make sure tuple has not already been marked dead to avoid extra
|
|
||||||
* WAL if wal_log_hints or data checksums enabled
|
|
||||||
*/
|
|
||||||
if (!ItemIdIsDead(itemid))
|
|
||||||
{
|
|
||||||
ItemIdMarkDead(itemid);
|
|
||||||
MarkBufferDirtyHint(buf, true);
|
|
||||||
}
|
|
||||||
|
|
||||||
break;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
/* Unlock buffer */
|
|
||||||
LockBuffer(buf, BUFFER_LOCK_UNLOCK);
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Prepare for an index scan
|
* Prepare for an index scan
|
||||||
*/
|
*/
|
||||||
@@ -261,9 +206,7 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
probes = lists;
|
probes = lists;
|
||||||
|
|
||||||
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
||||||
so->buf = InvalidBuffer;
|
|
||||||
so->first = true;
|
so->first = true;
|
||||||
ItemPointerSetInvalid(&so->heaptid);
|
|
||||||
so->probes = probes;
|
so->probes = probes;
|
||||||
so->dimensions = dimensions;
|
so->dimensions = dimensions;
|
||||||
|
|
||||||
@@ -274,13 +217,12 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
|
|
||||||
/* Create tuple description for sorting */
|
/* Create tuple description for sorting */
|
||||||
#if PG_VERSION_NUM >= 120000
|
#if PG_VERSION_NUM >= 120000
|
||||||
so->tupdesc = CreateTemplateTupleDesc(3);
|
so->tupdesc = CreateTemplateTupleDesc(2);
|
||||||
#else
|
#else
|
||||||
so->tupdesc = CreateTemplateTupleDesc(3, false);
|
so->tupdesc = CreateTemplateTupleDesc(2, false);
|
||||||
#endif
|
#endif
|
||||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
||||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
||||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
|
|
||||||
|
|
||||||
/* Prep sort */
|
/* Prep sort */
|
||||||
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
||||||
@@ -312,7 +254,6 @@ ivfflatrescan(IndexScanDesc scan, ScanKey keys, int nkeys, ScanKey orderbys, int
|
|||||||
#endif
|
#endif
|
||||||
|
|
||||||
so->first = true;
|
so->first = true;
|
||||||
ItemPointerSetInvalid(&so->heaptid);
|
|
||||||
pairingheap_reset(so->listQueue);
|
pairingheap_reset(so->listQueue);
|
||||||
|
|
||||||
if (keys && scan->numberOfKeys > 0)
|
if (keys && scan->numberOfKeys > 0)
|
||||||
@@ -347,6 +288,11 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan ivfflat index without order");
|
elog(ERROR, "cannot scan ivfflat index without order");
|
||||||
|
|
||||||
|
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
|
||||||
|
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||||
|
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||||
|
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
||||||
|
|
||||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||||
value = PointerGetDatum(InitVector(so->dimensions));
|
value = PointerGetDatum(InitVector(so->dimensions));
|
||||||
else
|
else
|
||||||
@@ -370,17 +316,10 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (value != scan->orderByData->sk_argument)
|
if (value != scan->orderByData->sk_argument)
|
||||||
pfree(DatumGetPointer(value));
|
pfree(DatumGetPointer(value));
|
||||||
}
|
}
|
||||||
else
|
|
||||||
{
|
|
||||||
/* Mark prior tuple as dead */
|
|
||||||
if (scan->kill_prior_tuple)
|
|
||||||
MarkPriorTupleDead(scan);
|
|
||||||
}
|
|
||||||
|
|
||||||
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
||||||
{
|
{
|
||||||
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||||
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
|
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 120000
|
#if PG_VERSION_NUM >= 120000
|
||||||
scan->xs_heaptid = *heaptid;
|
scan->xs_heaptid = *heaptid;
|
||||||
@@ -388,21 +327,6 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *heaptid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
/* Keep track of info needed to mark tuple as dead */
|
|
||||||
so->heaptid = *heaptid;
|
|
||||||
|
|
||||||
/* Unpin buffer */
|
|
||||||
if (BufferIsValid(so->buf))
|
|
||||||
ReleaseBuffer(so->buf);
|
|
||||||
|
|
||||||
/*
|
|
||||||
* An index scan must maintain a pin on the index page holding the
|
|
||||||
* item last returned by amgettuple
|
|
||||||
*
|
|
||||||
* https://www.postgresql.org/docs/current/index-locking.html
|
|
||||||
*/
|
|
||||||
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
@@ -418,10 +342,6 @@ ivfflatendscan(IndexScanDesc scan)
|
|||||||
{
|
{
|
||||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||||
|
|
||||||
/* Release pin */
|
|
||||||
if (BufferIsValid(so->buf))
|
|
||||||
ReleaseBuffer(so->buf);
|
|
||||||
|
|
||||||
pairingheap_free(so->listQueue);
|
pairingheap_free(so->listQueue);
|
||||||
tuplesort_end(so->sortstate);
|
tuplesort_end(so->sortstate);
|
||||||
|
|
||||||
|
|||||||
@@ -136,7 +136,6 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
|||||||
void
|
void
|
||||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -160,8 +159,6 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
|||||||
IvfflatInitPage(newbuf, newpage);
|
IvfflatInitPage(newbuf, newpage);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
MarkBufferDirty(*buf);
|
|
||||||
MarkBufferDirty(newbuf);
|
|
||||||
GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
|
||||||
|
|
||||||
/* Unlock */
|
/* Unlock */
|
||||||
|
|||||||
@@ -107,7 +107,6 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
|||||||
{
|
{
|
||||||
/* Delete tuples */
|
/* Delete tuples */
|
||||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||||
MarkBufferDirty(buf);
|
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
|
|||||||
@@ -1,4 +1,4 @@
|
|||||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||||
default_version = '0.5.0'
|
default_version = '0.5.1'
|
||||||
module_pathname = '$libdir/vector'
|
module_pathname = '$libdir/vector'
|
||||||
relocatable = true
|
relocatable = true
|
||||||
|
|||||||
Reference in New Issue
Block a user