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4 Commits
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datum
| Author | SHA1 | Date | |
|---|---|---|---|
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310a880186 | ||
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3c2a3db8b2 | ||
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d57a34b25c | ||
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9ac825d14e |
@@ -1,7 +1,7 @@
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## 0.5.1 (2023-10-10)
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## 0.5.1 (unreleased)
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||||
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- Improved performance of HNSW index builds
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- Added check for MVCC-compliant snapshot for index scans
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- Improved performance of index scans for IVFFlat after updates and deletes
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- Fixed locking for index scans for HNSW
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## 0.5.0 (2023-08-28)
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@@ -2,7 +2,7 @@
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"name": "vector",
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"abstract": "Open-source vector similarity search for Postgres",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"version": "0.5.1",
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"version": "0.5.0",
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"maintainer": [
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"Andrew Kane <andrew@ankane.org>"
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],
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@@ -20,7 +20,7 @@
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"vector": {
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"file": "sql/vector.sql",
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"docfile": "README.md",
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"version": "0.5.1",
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"version": "0.5.0",
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"abstract": "Open-source vector similarity search for Postgres"
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}
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},
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2
Makefile
2
Makefile
@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
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```sh
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cd /tmp
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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make
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make install # may need sudo
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@@ -509,7 +509,7 @@ Then use `nmake` to build:
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```cmd
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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nmake /F Makefile.win
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nmake /F Makefile.win install
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@@ -530,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
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You can also build the image manually:
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```sh
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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```
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@@ -1,2 +0,0 @@
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-- complain if script is sourced in psql, rather than via CREATE EXTENSION
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\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit
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11
src/hnsw.h
11
src/hnsw.h
@@ -57,9 +57,7 @@
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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#define PROGRESS_HNSW_PHASE_LOAD 2
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#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
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@@ -98,12 +96,13 @@ typedef struct HnswElementData
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List *heaptids;
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uint8 level;
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uint8 deleted;
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bool loaded;
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HnswNeighborArray *neighbors;
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BlockNumber blkno;
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OffsetNumber offno;
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OffsetNumber neighborOffno;
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BlockNumber neighborPage;
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Vector *vec;
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Datum value;
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} HnswElementData;
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typedef HnswElementData * HnswElement;
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@@ -112,13 +111,11 @@ typedef struct HnswCandidate
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{
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HnswElement element;
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float distance;
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bool closer;
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} HnswCandidate;
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typedef struct HnswNeighborArray
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{
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int length;
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bool closerSet;
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HnswCandidate *items;
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} HnswNeighborArray;
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@@ -204,7 +201,7 @@ typedef struct HnswElementTupleData
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ItemPointerData heaptids[HNSW_HEAPTIDS];
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ItemPointerData neighbortid;
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uint16 unused2;
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Vector vec;
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char value[FLEXIBLE_ARRAY_MEMBER];
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} HnswElementTupleData;
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typedef HnswElementTupleData * HnswElementTuple;
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@@ -8,6 +8,7 @@
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#include "lib/pairingheap.h"
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#include "nodes/pg_list.h"
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#include "storage/bufmgr.h"
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#include "utils/datum.h"
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#include "utils/memutils.h"
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#if PG_VERSION_NUM >= 140000
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@@ -81,6 +82,7 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
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HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
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/* Commit */
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MarkBufferDirty(*buf);
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GenericXLogFinish(*state);
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UnlockReleaseBuffer(*buf);
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@@ -105,8 +107,6 @@ CreateElementPages(HnswBuildState * buildstate)
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{
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Relation index = buildstate->index;
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ForkNumber forkNum = buildstate->forkNum;
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int dimensions = buildstate->dimensions;
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Size etupSize;
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Size maxSize;
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HnswElementTuple etup;
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HnswNeighborTuple ntup;
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@@ -117,12 +117,11 @@ CreateElementPages(HnswBuildState * buildstate)
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ListCell *lc;
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/* Calculate sizes */
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maxSize = HNSW_MAX_SIZE;
|
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
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maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
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/* Allocate once */
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etup = palloc0(etupSize);
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ntup = palloc0(BLCKSZ);
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etup = palloc0(maxSize);
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ntup = palloc0(maxSize);
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/* Prepare first page */
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buf = HnswNewBuffer(index, forkNum);
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@@ -133,12 +132,14 @@ CreateElementPages(HnswBuildState * buildstate)
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foreach(lc, buildstate->elements)
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{
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HnswElement element = lfirst(lc);
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Size etupSize;
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Size ntupSize;
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Size combinedSize;
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HnswSetElementTuple(etup, element);
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/* Calculate sizes */
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
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ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
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combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
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@@ -178,6 +179,7 @@ CreateElementPages(HnswBuildState * buildstate)
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insertPage = BufferGetBlockNumber(buf);
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/* Commit */
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MarkBufferDirty(buf);
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GenericXLogFinish(state);
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UnlockReleaseBuffer(buf);
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@@ -225,6 +227,7 @@ CreateNeighborPages(HnswBuildState * buildstate)
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elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
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/* Commit */
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MarkBufferDirty(buf);
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GenericXLogFinish(state);
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UnlockReleaseBuffer(buf);
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}
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@@ -273,18 +276,15 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
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int m = buildstate->m;
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/* Detoast once for all calls */
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Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
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element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
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/* Normalize if needed */
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if (buildstate->normprocinfo != NULL)
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{
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if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
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if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
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return false;
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}
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||||
/* Copy value to element so accessible outside of memory context */
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memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
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||||
/* Insert element in graph */
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HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
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@@ -360,7 +360,6 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
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/* Allocate necessary memory outside of memory context */
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element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
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element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
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||||
/* Use memory context since detoast can allocate */
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oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
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@@ -368,9 +367,8 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
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/* Insert tuple */
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inserted = InsertTuple(index, values, element, buildstate, &dup);
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/* Reset memory context */
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/* Switch memory context */
|
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MemoryContextSwitchTo(oldCtx);
|
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MemoryContextReset(buildstate->tmpCtx);
|
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|
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/* Add outside memory context */
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if (dup != NULL)
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@@ -378,9 +376,16 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
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|
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/* Add to buildstate or free */
|
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if (inserted)
|
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{
|
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element->value = datumCopy(element->value, false, -1);
|
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element->loaded = true;
|
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buildstate->elements = lappend(buildstate->elements, element);
|
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}
|
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else
|
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HnswFreeElement(element);
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
@@ -123,7 +123,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
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Size minCombinedSize;
|
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HnswElementTuple etup;
|
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BlockNumber currentPage = insertPage;
|
||||
int dimensions = e->vec->dim;
|
||||
HnswNeighborTuple ntup;
|
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Buffer nbuf;
|
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Page npage;
|
||||
@@ -132,10 +131,10 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
maxSize = HNSW_MAX_SIZE;
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
||||
|
||||
/* Prepare element tuple */
|
||||
@@ -202,6 +201,8 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
@@ -268,6 +269,9 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
}
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
if (nbuf != buf)
|
||||
@@ -386,6 +390,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
@@ -405,7 +410,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
||||
HnswElementTuple etup;
|
||||
int i;
|
||||
|
||||
@@ -439,6 +444,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -515,7 +521,7 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||
element->vec = DatumGetVector(value);
|
||||
element->value = value;
|
||||
|
||||
/* Prevent concurrent inserts when likely updating entry point */
|
||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||
|
||||
@@ -113,6 +113,12 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
||||
|
||||
scan->opaque = so;
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
return scan;
|
||||
}
|
||||
|
||||
@@ -160,25 +166,11 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (scan->orderByData == NULL)
|
||||
elog(ERROR, "cannot scan hnsw index without order");
|
||||
|
||||
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
|
||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
|
||||
|
||||
/* Get scan value */
|
||||
value = GetScanValue(scan);
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
so->w = GetScanItems(scan, value);
|
||||
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
so->first = false;
|
||||
}
|
||||
|
||||
@@ -206,6 +198,15 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
#endif
|
||||
|
||||
/*
|
||||
* Typically, an index scan must maintain a pin on the index page
|
||||
* holding the item last returned by amgettuple. However, this is not
|
||||
* needed with the current vacuum strategy, which ensures scans do not
|
||||
* visit tuples in danger of being marked as deleted.
|
||||
*
|
||||
* https://www.postgresql.org/docs/current/index-locking.html
|
||||
*/
|
||||
|
||||
scan->xs_recheckorderby = false;
|
||||
return true;
|
||||
}
|
||||
@@ -222,6 +223,9 @@ hnswendscan(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
MemoryContextDelete(so->tmpCtx);
|
||||
|
||||
pfree(so);
|
||||
|
||||
144
src/hnswutils.c
144
src/hnswutils.c
@@ -4,6 +4,7 @@
|
||||
|
||||
#include "hnsw.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "vector.h"
|
||||
|
||||
/*
|
||||
@@ -117,6 +118,7 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
||||
void
|
||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -139,7 +141,6 @@ HnswInitNeighbors(HnswElement element, int m)
|
||||
a = &element->neighbors[lc];
|
||||
a->length = 0;
|
||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||
a->closerSet = false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -187,7 +188,8 @@ HnswFreeElement(HnswElement element)
|
||||
{
|
||||
HnswFreeNeighbors(element);
|
||||
list_free_deep(element->heaptids);
|
||||
pfree(element->vec);
|
||||
if (element->loaded)
|
||||
pfree(DatumGetPointer(element->value));
|
||||
pfree(element);
|
||||
}
|
||||
|
||||
@@ -214,7 +216,7 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
||||
element->blkno = blkno;
|
||||
element->offno = offno;
|
||||
element->neighbors = NULL;
|
||||
element->vec = NULL;
|
||||
element->loaded = false;
|
||||
return element;
|
||||
}
|
||||
|
||||
@@ -324,7 +326,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
||||
else
|
||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||
}
|
||||
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
||||
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -447,8 +449,10 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
||||
|
||||
if (loadVec)
|
||||
{
|
||||
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
||||
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
||||
Datum value = PointerGetDatum(&etup->value);
|
||||
|
||||
element->value = datumCopy(value, false, -1);
|
||||
element->loaded = true;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -476,7 +480,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
|
||||
/* Calculate distance */
|
||||
if (distance != NULL)
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -487,7 +491,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
static float
|
||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||
{
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -693,34 +697,6 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
||||
return w;
|
||||
}
|
||||
|
||||
/*
|
||||
* Compare candidate distances
|
||||
*/
|
||||
static int
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||
#else
|
||||
CompareCandidateDistances(const void *a, const void *b)
|
||||
#endif
|
||||
{
|
||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||
|
||||
if (hca->distance < hcb->distance)
|
||||
return 1;
|
||||
|
||||
if (hca->distance > hcb->distance)
|
||||
return -1;
|
||||
|
||||
if (hca->element < hcb->element)
|
||||
return 1;
|
||||
|
||||
if (hca->element > hcb->element)
|
||||
return -1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/*
|
||||
* Calculate the distance between elements
|
||||
*/
|
||||
@@ -750,7 +726,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
||||
}
|
||||
}
|
||||
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -777,77 +753,33 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
||||
* Algorithm 4 from paper
|
||||
*/
|
||||
static List *
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
||||
{
|
||||
List *r = NIL;
|
||||
List *w = list_copy(c);
|
||||
pairingheap *wd;
|
||||
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
||||
List *added = NIL;
|
||||
bool removedAny = false;
|
||||
|
||||
if (list_length(w) <= m)
|
||||
return w;
|
||||
|
||||
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
||||
|
||||
/* Ensure order of candidates is deterministic for closer caching */
|
||||
if (sortCandidates)
|
||||
list_sort(w, CompareCandidateDistances);
|
||||
|
||||
while (list_length(w) > 0 && list_length(r) < m)
|
||||
{
|
||||
/* Assumes w is already ordered desc */
|
||||
HnswCandidate *e = llast(w);
|
||||
bool closer;
|
||||
|
||||
w = list_delete_last(w);
|
||||
|
||||
/* Use previous state of r and wd to skip work when possible */
|
||||
if (mustCalculate)
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
else if (list_length(added) > 0)
|
||||
{
|
||||
/*
|
||||
* If the current candidate was closer, we only need to compare it
|
||||
* with the other candidates that we have added.
|
||||
*/
|
||||
if (e->closer)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
|
||||
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
|
||||
if (!e->closer)
|
||||
removedAny = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
/*
|
||||
* If we have removed any candidates from closer, a candidate
|
||||
* that was not closer earlier might now be.
|
||||
*/
|
||||
if (removedAny)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
if (e->closer)
|
||||
added = lappend(added, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (e == newCandidate)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
if (e->closer)
|
||||
added = lappend(added, e);
|
||||
}
|
||||
|
||||
if (e->closer)
|
||||
if (closer)
|
||||
r = lappend(r, e);
|
||||
else
|
||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||
}
|
||||
|
||||
/* Cached value can only be used in future if sorted deterministically */
|
||||
e2->neighbors[lc].closerSet = sortCandidates;
|
||||
|
||||
/* Keep pruned connections */
|
||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||
@@ -877,7 +809,7 @@ HnswFindDuplicate(HnswElement e)
|
||||
HnswCandidate *neighbor = &neighbors->items[i];
|
||||
|
||||
/* Exit early since ordered by distance */
|
||||
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
||||
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
||||
break;
|
||||
|
||||
/* Check for space */
|
||||
@@ -901,6 +833,28 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
|
||||
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
||||
}
|
||||
|
||||
/*
|
||||
* Compare candidate distances
|
||||
*/
|
||||
static int
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||
#else
|
||||
CompareCandidateDistances(const void *a, const void *b)
|
||||
#endif
|
||||
{
|
||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||
|
||||
if (hca->distance < hcb->distance)
|
||||
return 1;
|
||||
|
||||
if (hca->distance > hcb->distance)
|
||||
return -1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/*
|
||||
* Update connections
|
||||
*/
|
||||
@@ -930,13 +884,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
/* Load elements on insert */
|
||||
if (index != NULL)
|
||||
{
|
||||
Datum q = PointerGetDatum(hc->element->vec);
|
||||
Datum q = hc->element->value;
|
||||
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
{
|
||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||
|
||||
if (hc3->element->vec == NULL)
|
||||
if (!hc3->element->loaded)
|
||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||
else
|
||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||
@@ -954,12 +908,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
{
|
||||
List *c = NIL;
|
||||
|
||||
/* Add candidates */
|
||||
/* Add and sort candidates */
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
c = lappend(c, ¤tNeighbors->items[i]);
|
||||
c = lappend(c, &hc2);
|
||||
list_sort(c, CompareCandidateDistances);
|
||||
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
||||
|
||||
/* Should not happen */
|
||||
if (pruned == NULL)
|
||||
@@ -1017,7 +972,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *w;
|
||||
int level = element->level;
|
||||
int entryLevel;
|
||||
Datum q = PointerGetDatum(element->vec);
|
||||
Datum q = element->value;
|
||||
HnswElement skipElement = existing ? element : NULL;
|
||||
|
||||
/* No neighbors if no entry point */
|
||||
@@ -1058,12 +1013,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
else
|
||||
lw = w;
|
||||
|
||||
/*
|
||||
* Candidates are sorted, but not deterministically. Could set
|
||||
* sortCandidates to true for in-memory builds to enable closer
|
||||
* caching, but there does not seem to be a difference in performance.
|
||||
*/
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
||||
|
||||
AddConnections(element, neighbors, lm, lc);
|
||||
|
||||
|
||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
|
||||
if (itemUpdated)
|
||||
{
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
||||
|
||||
/* Mark rest as invalid */
|
||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||
@@ -128,7 +128,10 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||
|
||||
if (updated)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
GenericXLogAbort(state);
|
||||
|
||||
@@ -226,6 +229,7 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -481,6 +485,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
HnswNeighborTuple ntup;
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Datum value;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
BlockNumber neighborPage;
|
||||
@@ -504,8 +509,11 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||
continue;
|
||||
|
||||
/* Get datum */
|
||||
value = PointerGetDatum(&etup->value);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||
|
||||
/* Get neighbor page */
|
||||
@@ -528,7 +536,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
|
||||
/* Overwrite element */
|
||||
etup->deleted = 1;
|
||||
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
||||
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
||||
|
||||
/* Overwrite neighbors */
|
||||
for (int i = 0; i < ntup->count; i++)
|
||||
@@ -543,6 +551,9 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
if (nbuf != buf)
|
||||
UnlockReleaseBuffer(nbuf);
|
||||
|
||||
@@ -11,7 +11,6 @@
|
||||
#include "miscadmin.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "tcop/tcopprot.h"
|
||||
#include "utils/datum.h"
|
||||
#include "utils/memutils.h"
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
@@ -66,18 +65,11 @@
|
||||
static void
|
||||
AddSample(Datum *values, IvfflatBuildState * buildstate)
|
||||
{
|
||||
MemoryContext oldCtx;
|
||||
Datum value;
|
||||
int targsamples = buildstate->targsamples;
|
||||
|
||||
/* Use memory context since detoast can allocate */
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
VectorArray samples = buildstate->samples;
|
||||
int targsamples = samples->maxlen;
|
||||
|
||||
/* Detoast once for all calls */
|
||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Restore memory context */
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/*
|
||||
* Normalize with KMEANS_NORM_PROC since spherical distance function
|
||||
@@ -89,23 +81,18 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
||||
return;
|
||||
}
|
||||
|
||||
/* Copy datum */
|
||||
value = datumCopy(value, false, -1);
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
|
||||
if (list_length(buildstate->samples) < targsamples)
|
||||
buildstate->samples = lappend(buildstate->samples, DatumGetVector(value));
|
||||
if (samples->length < targsamples)
|
||||
{
|
||||
VectorArraySet(samples, samples->length, DatumGetVector(value));
|
||||
samples->length++;
|
||||
}
|
||||
else
|
||||
{
|
||||
if (buildstate->rowstoskip < 0)
|
||||
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, list_length(buildstate->samples), targsamples);
|
||||
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, samples->length, targsamples);
|
||||
|
||||
if (buildstate->rowstoskip <= 0)
|
||||
{
|
||||
ListCell *lc;
|
||||
|
||||
#if PG_VERSION_NUM >= 150000
|
||||
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
|
||||
#else
|
||||
@@ -113,8 +100,7 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
||||
#endif
|
||||
|
||||
Assert(k >= 0 && k < targsamples);
|
||||
lc = list_nth_cell(buildstate->samples, k);
|
||||
lfirst(lc) = DatumGetVector(value);
|
||||
VectorArraySet(samples, k, DatumGetVector(value));
|
||||
}
|
||||
|
||||
buildstate->rowstoskip -= 1;
|
||||
@@ -129,13 +115,21 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
bool *isnull, bool tupleIsAlive, void *state)
|
||||
{
|
||||
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
|
||||
MemoryContext oldCtx;
|
||||
|
||||
/* Skip nulls */
|
||||
if (isnull[0])
|
||||
return;
|
||||
|
||||
/* Use memory context since detoast can allocate */
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
|
||||
/* Add sample */
|
||||
AddSample(values, buildstate);
|
||||
AddSample(values, state);
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -144,7 +138,7 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
static void
|
||||
SampleRows(IvfflatBuildState * buildstate)
|
||||
{
|
||||
int targsamples = buildstate->targsamples;
|
||||
int targsamples = buildstate->samples->maxlen;
|
||||
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
|
||||
|
||||
buildstate->rowstoskip = -1;
|
||||
@@ -455,13 +449,12 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
||||
|
||||
/* Sample rows */
|
||||
/* TODO Ensure within maintenance_work_mem */
|
||||
buildstate->samples = NIL;
|
||||
buildstate->targsamples = numSamples;
|
||||
buildstate->samples = VectorArrayInit(numSamples, buildstate->dimensions);
|
||||
if (buildstate->heap != NULL)
|
||||
{
|
||||
SampleRows(buildstate);
|
||||
|
||||
if (list_length(buildstate->samples) < buildstate->lists)
|
||||
if (buildstate->samples->length < buildstate->lists)
|
||||
{
|
||||
ereport(NOTICE,
|
||||
(errmsg("ivfflat index created with little data"),
|
||||
@@ -474,7 +467,7 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
||||
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
|
||||
|
||||
/* Free samples before we allocate more memory */
|
||||
list_free_deep(buildstate->samples);
|
||||
VectorArrayFree(buildstate->samples);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -513,11 +506,9 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size listSize;
|
||||
IvfflatList list;
|
||||
|
||||
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||
list = palloc(listSize);
|
||||
list = palloc0(BLCKSZ);
|
||||
|
||||
buf = IvfflatNewBuffer(index, forkNum);
|
||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||
@@ -525,11 +516,13 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
for (int i = 0; i < lists; i++)
|
||||
{
|
||||
OffsetNumber offno;
|
||||
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
|
||||
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
|
||||
|
||||
/* Load list */
|
||||
list->startPage = InvalidBlockNumber;
|
||||
list->insertPage = InvalidBlockNumber;
|
||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||
memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
|
||||
|
||||
/* Ensure free space */
|
||||
if (PageGetFreeSpace(page) < listSize)
|
||||
|
||||
@@ -52,7 +52,7 @@
|
||||
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
||||
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
||||
|
||||
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim))
|
||||
#define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
|
||||
|
||||
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
||||
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
||||
@@ -80,10 +80,6 @@
|
||||
#define RandomInt() random()
|
||||
#endif
|
||||
|
||||
#if PG_VERSION_NUM < 130000
|
||||
#define list_sort(list, cmp) list_qsort(list, cmp)
|
||||
#endif
|
||||
|
||||
/* Variables */
|
||||
extern int ivfflat_probes;
|
||||
|
||||
@@ -182,8 +178,7 @@ typedef struct IvfflatBuildState
|
||||
Oid collation;
|
||||
|
||||
/* Variables */
|
||||
List *samples;
|
||||
int targsamples;
|
||||
VectorArray samples;
|
||||
VectorArray centers;
|
||||
ListInfo *listInfo;
|
||||
Vector *normvec;
|
||||
@@ -234,7 +229,7 @@ typedef struct IvfflatListData
|
||||
{
|
||||
BlockNumber startPage;
|
||||
BlockNumber insertPage;
|
||||
Vector center;
|
||||
char center[FLEXIBLE_ARRAY_MEMBER];
|
||||
} IvfflatListData;
|
||||
|
||||
typedef IvfflatListData * IvfflatList;
|
||||
@@ -251,6 +246,8 @@ typedef struct IvfflatScanOpaqueData
|
||||
int probes;
|
||||
int dimensions;
|
||||
bool first;
|
||||
Buffer buf;
|
||||
ItemPointerData heaptid;
|
||||
|
||||
/* Sorting */
|
||||
Tuplesortstate *sortstate;
|
||||
@@ -279,7 +276,7 @@ typedef IvfflatScanOpaqueData * IvfflatScanOpaque;
|
||||
VectorArray VectorArrayInit(int maxlen, int dimensions);
|
||||
void VectorArrayFree(VectorArray arr);
|
||||
void PrintVectorArray(char *msg, VectorArray arr);
|
||||
void IvfflatKmeans(Relation index, List *samples, VectorArray centers);
|
||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||
int IvfflatGetLists(Relation index);
|
||||
|
||||
@@ -99,7 +99,7 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
|
||||
/* Get tuple size */
|
||||
itemsz = MAXALIGN(IndexTupleSize(itup));
|
||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
|
||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
|
||||
|
||||
/* Find a page to insert the item */
|
||||
for (;;)
|
||||
@@ -142,6 +142,8 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
|
||||
@@ -12,20 +12,20 @@
|
||||
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
|
||||
*/
|
||||
static void
|
||||
InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBound)
|
||||
InitCenters(Relation index, VectorArray samples, VectorArray centers, float *lowerBound)
|
||||
{
|
||||
FmgrInfo *procinfo;
|
||||
Oid collation;
|
||||
int64 j;
|
||||
float *weight = palloc(list_length(samples) * sizeof(float));
|
||||
float *weight = palloc(samples->length * sizeof(float));
|
||||
int numCenters = centers->maxlen;
|
||||
int numSamples = list_length(samples);
|
||||
int numSamples = samples->length;
|
||||
|
||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
|
||||
collation = index->rd_indcollation[0];
|
||||
|
||||
/* Choose an initial center uniformly at random */
|
||||
VectorArraySet(centers, 0, list_nth(samples, RandomInt() % list_length(samples)));
|
||||
VectorArraySet(centers, 0, VectorArrayGet(samples, RandomInt() % samples->length));
|
||||
centers->length++;
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
@@ -42,7 +42,7 @@ InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBoun
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
Vector *vec = list_nth(samples, j);
|
||||
Vector *vec = VectorArrayGet(samples, j);
|
||||
double distance;
|
||||
|
||||
/* Only need to compute distance for new center */
|
||||
@@ -74,7 +74,7 @@ InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBoun
|
||||
break;
|
||||
}
|
||||
|
||||
VectorArraySet(centers, i + 1, list_nth(samples, j));
|
||||
VectorArraySet(centers, i + 1, VectorArrayGet(samples, j));
|
||||
centers->length++;
|
||||
}
|
||||
|
||||
@@ -106,41 +106,25 @@ CompareVectors(const void *a, const void *b)
|
||||
return vector_cmp_internal((Vector *) a, (Vector *) b);
|
||||
}
|
||||
|
||||
/*
|
||||
* Compare list vectors
|
||||
*/
|
||||
static int
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
CompareListVectors(const ListCell *a, const ListCell *b)
|
||||
#else
|
||||
CompareListVectors(const void *a, const void *b)
|
||||
#endif
|
||||
{
|
||||
Vector *va = lfirst((ListCell *) a);
|
||||
Vector *vb = lfirst((ListCell *) b);
|
||||
|
||||
return CompareVectors(va, vb);
|
||||
}
|
||||
|
||||
/*
|
||||
* Quick approach if we have little data
|
||||
*/
|
||||
static void
|
||||
QuickCenters(Relation index, List *samples, VectorArray centers)
|
||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
int dimensions = centers->dim;
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||
|
||||
/* Copy existing vectors while avoiding duplicates */
|
||||
if (list_length(samples) > 0)
|
||||
if (samples->length > 0)
|
||||
{
|
||||
list_sort(samples, CompareListVectors);
|
||||
for (int i = 0; i < list_length(samples); i++)
|
||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||
for (int i = 0; i < samples->length; i++)
|
||||
{
|
||||
Vector *vec = list_nth(samples, i);
|
||||
Vector *vec = VectorArrayGet(samples, i);
|
||||
|
||||
if (i == 0 || CompareVectors(vec, list_nth(samples, i - 1)) != 0)
|
||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||
{
|
||||
VectorArraySet(centers, centers->length, vec);
|
||||
centers->length++;
|
||||
@@ -176,7 +160,7 @@ QuickCenters(Relation index, List *samples, VectorArray centers)
|
||||
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
|
||||
*/
|
||||
static void
|
||||
ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||
ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
FmgrInfo *procinfo;
|
||||
FmgrInfo *normprocinfo;
|
||||
@@ -187,7 +171,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||
int64 k;
|
||||
int dimensions = centers->dim;
|
||||
int numCenters = centers->maxlen;
|
||||
int numSamples = list_length(samples);
|
||||
int numSamples = samples->length;
|
||||
VectorArray newCenters;
|
||||
int *centerCounts;
|
||||
int *closestCenters;
|
||||
@@ -198,7 +182,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||
float *newcdist;
|
||||
|
||||
/* Calculate allocation sizes */
|
||||
Size samplesSize = 0;
|
||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
|
||||
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
|
||||
Size centerCountsSize = sizeof(int) * numCenters;
|
||||
@@ -342,7 +326,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
|
||||
continue;
|
||||
|
||||
vec = list_nth(samples, j);
|
||||
vec = VectorArrayGet(samples, j);
|
||||
|
||||
/* Step 3a */
|
||||
if (rj)
|
||||
@@ -393,7 +377,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
||||
{
|
||||
int closestCenter;
|
||||
|
||||
vec = list_nth(samples, j);
|
||||
vec = VectorArrayGet(samples, j);
|
||||
closestCenter = closestCenters[j];
|
||||
|
||||
/* Increment sum and count of closest center */
|
||||
@@ -530,9 +514,9 @@ CheckCenters(Relation index, VectorArray centers)
|
||||
* We use spherical k-means for inner product and cosine
|
||||
*/
|
||||
void
|
||||
IvfflatKmeans(Relation index, List *samples, VectorArray centers)
|
||||
IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
if (list_length(samples) <= centers->maxlen)
|
||||
if (samples->length <= centers->maxlen)
|
||||
QuickCenters(index, samples, centers);
|
||||
else
|
||||
ElkanKmeans(index, samples, centers);
|
||||
|
||||
@@ -143,6 +143,10 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
bool isnull;
|
||||
ItemId itemid = PageGetItemId(page, offno);
|
||||
|
||||
/* Skip dead tuples */
|
||||
if (scan->ignore_killed_tuples && ItemIdIsDead(itemid))
|
||||
continue;
|
||||
|
||||
itup = (IndexTuple) PageGetItem(page, itemid);
|
||||
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
||||
|
||||
@@ -157,6 +161,8 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
slot->tts_isnull[0] = false;
|
||||
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
||||
slot->tts_isnull[1] = false;
|
||||
slot->tts_values[2] = Int32GetDatum((int) searchPage);
|
||||
slot->tts_isnull[2] = false;
|
||||
ExecStoreVirtualTuple(slot);
|
||||
|
||||
tuplesort_puttupleslot(so->sortstate, slot);
|
||||
@@ -181,6 +187,55 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
tuplesort_performsort(so->sortstate);
|
||||
}
|
||||
|
||||
/*
|
||||
* Mark prior tuple as dead
|
||||
*/
|
||||
static void
|
||||
MarkPriorTupleDead(IndexScanDesc scan)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
Buffer buf = so->buf;
|
||||
Page page;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
/* Safety check */
|
||||
if (!BufferIsValid(so->buf) || !ItemPointerIsValid(&so->heaptid))
|
||||
return;
|
||||
|
||||
/* Only a shared locked is needed for ItemIdMarkDead */
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
maxoffno = PageGetMaxOffsetNumber(page);
|
||||
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
ItemId itemid = PageGetItemId(page, offno);
|
||||
IndexTuple itup = (IndexTuple) PageGetItem(page, itemid);
|
||||
|
||||
/*
|
||||
* Find tuple. Since buffer has been pinned, tuple cannot have been
|
||||
* vacuumed (and heap TID reused).
|
||||
*/
|
||||
if (ItemPointerEquals(&itup->t_tid, &so->heaptid))
|
||||
{
|
||||
/*
|
||||
* Make sure tuple has not already been marked dead to avoid extra
|
||||
* WAL if wal_log_hints or data checksums enabled
|
||||
*/
|
||||
if (!ItemIdIsDead(itemid))
|
||||
{
|
||||
ItemIdMarkDead(itemid);
|
||||
MarkBufferDirtyHint(buf, true);
|
||||
}
|
||||
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/* Unlock buffer */
|
||||
LockBuffer(buf, BUFFER_LOCK_UNLOCK);
|
||||
}
|
||||
|
||||
/*
|
||||
* Prepare for an index scan
|
||||
*/
|
||||
@@ -206,7 +261,9 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
probes = lists;
|
||||
|
||||
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
||||
so->buf = InvalidBuffer;
|
||||
so->first = true;
|
||||
ItemPointerSetInvalid(&so->heaptid);
|
||||
so->probes = probes;
|
||||
so->dimensions = dimensions;
|
||||
|
||||
@@ -217,12 +274,13 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
|
||||
/* Create tuple description for sorting */
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
so->tupdesc = CreateTemplateTupleDesc(2);
|
||||
so->tupdesc = CreateTemplateTupleDesc(3);
|
||||
#else
|
||||
so->tupdesc = CreateTemplateTupleDesc(2, false);
|
||||
so->tupdesc = CreateTemplateTupleDesc(3, false);
|
||||
#endif
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
|
||||
|
||||
/* Prep sort */
|
||||
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
||||
@@ -254,6 +312,7 @@ ivfflatrescan(IndexScanDesc scan, ScanKey keys, int nkeys, ScanKey orderbys, int
|
||||
#endif
|
||||
|
||||
so->first = true;
|
||||
ItemPointerSetInvalid(&so->heaptid);
|
||||
pairingheap_reset(so->listQueue);
|
||||
|
||||
if (keys && scan->numberOfKeys > 0)
|
||||
@@ -288,11 +347,6 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (scan->orderByData == NULL)
|
||||
elog(ERROR, "cannot scan ivfflat index without order");
|
||||
|
||||
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
|
||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(so->dimensions));
|
||||
else
|
||||
@@ -316,10 +370,17 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (value != scan->orderByData->sk_argument)
|
||||
pfree(DatumGetPointer(value));
|
||||
}
|
||||
else
|
||||
{
|
||||
/* Mark prior tuple as dead */
|
||||
if (scan->kill_prior_tuple)
|
||||
MarkPriorTupleDead(scan);
|
||||
}
|
||||
|
||||
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
||||
{
|
||||
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan->xs_heaptid = *heaptid;
|
||||
@@ -327,6 +388,21 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
#endif
|
||||
|
||||
/* Keep track of info needed to mark tuple as dead */
|
||||
so->heaptid = *heaptid;
|
||||
|
||||
/* Unpin buffer */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
/*
|
||||
* An index scan must maintain a pin on the index page holding the
|
||||
* item last returned by amgettuple
|
||||
*
|
||||
* https://www.postgresql.org/docs/current/index-locking.html
|
||||
*/
|
||||
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||
|
||||
scan->xs_recheckorderby = false;
|
||||
return true;
|
||||
}
|
||||
@@ -342,6 +418,10 @@ ivfflatendscan(IndexScanDesc scan)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
|
||||
/* Release pin */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
pairingheap_free(so->listQueue);
|
||||
tuplesort_end(so->sortstate);
|
||||
|
||||
|
||||
@@ -136,6 +136,7 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
||||
void
|
||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -159,6 +160,8 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
||||
IvfflatInitPage(newbuf, newpage);
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||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(*buf);
|
||||
MarkBufferDirty(newbuf);
|
||||
GenericXLogFinish(*state);
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||||
|
||||
/* Unlock */
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||||
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||||
@@ -107,6 +107,7 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
||||
{
|
||||
/* Delete tuples */
|
||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
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||||
else
|
||||
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||||
@@ -1,4 +1,4 @@
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||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||
default_version = '0.5.1'
|
||||
default_version = '0.5.0'
|
||||
module_pathname = '$libdir/vector'
|
||||
relocatable = true
|
||||
|
||||
Reference in New Issue
Block a user