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v0.5.0
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hnsw-array
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@@ -1,13 +1,18 @@
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## 0.5.1 (unreleased)
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- Improved performance of index scans for IVFFlat after updates and deletes
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- Fixed locking for index scans for HNSW
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## 0.5.0 (2023-08-28)
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- Added HNSW index type
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- Added support for parallel index builds
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- Added support for parallel index builds for IVFFlat
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- Added `l1_distance` function
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- Added element-wise multiplication for vectors
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- Added `sum` aggregate
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- Improved performance of distance functions
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- Fixed out of range results for cosine distance
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- Fixed results for NULL and NaN distances
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- Fixed results for NULL and NaN distances for IVFFlat
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## 0.4.4 (2023-06-12)
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4
Makefile
4
Makefile
@@ -3,12 +3,12 @@ EXTVERSION = 0.5.0
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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OBJS = src/float4.o src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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HEADERS = src/vector.h
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TESTS = $(wildcard test/sql/*.sql)
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REGRESS = $(patsubst test/sql/%.sql,%,$(TESTS))
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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OPTFLAGS = -march=native
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@@ -1,11 +1,11 @@
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EXTENSION = vector
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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OBJS = src\float4.obj src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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# For /arch flags
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# https://learn.microsoft.com/en-us/cpp/build/reference/arch-minimum-cpu-architecture
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14
README.md
14
README.md
@@ -162,7 +162,7 @@ You can add an index to use approximate nearest neighbor search, which trades so
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Supported index types are:
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- [IVFFlat](#ivfflat)
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- [HNSW](#hnsw) - *added in 0.5.0*
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- [HNSW](#hnsw) - added in 0.5.0
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## IVFFlat
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@@ -282,8 +282,8 @@ SELECT phase, tuples_done, tuples_total FROM pg_stat_progress_create_index;
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The phases are:
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1. `initializing`
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2. `performing k-means` (IVFFlat only)
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3. `assigning tuples` (IVFFlat only)
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2. `performing k-means` - IVFFlat only
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3. `assigning tuples` - IVFFlat only
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4. `loading tuples`
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Note: `tuples_done` and `tuples_total` are only populated during the `loading tuples` phase
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@@ -595,12 +595,18 @@ pgvector is available on [these providers](https://github.com/pgvector/pgvector/
|
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## Upgrading
|
||||
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Install the latest version and run:
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Install the latest version. Then in each database you want to upgrade, run:
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||||
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```sql
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ALTER EXTENSION vector UPDATE;
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```
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||||
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You can check the version in the current database with:
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||||
|
||||
```sql
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||||
SELECT extversion FROM pg_extension WHERE extname = 'vector';
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||||
```
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||||
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||||
## Upgrade Notes
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||||
|
||||
### 0.4.0
|
||||
|
||||
@@ -34,6 +34,9 @@ CREATE TYPE vector (
|
||||
CREATE FUNCTION l2_distance(vector, vector) RETURNS float8
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||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE FUNCTION l2_distance(float4[], float4[]) RETURNS float8
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||||
AS 'MODULE_PATHNAME', 'float4_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE FUNCTION inner_product(vector, vector) RETURNS float8
|
||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
@@ -84,6 +87,9 @@ CREATE FUNCTION vector_cmp(vector, vector) RETURNS int4
|
||||
CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8
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||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
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||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8
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||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
@@ -164,6 +170,11 @@ CREATE OPERATOR <-> (
|
||||
COMMUTATOR = '<->'
|
||||
);
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||||
|
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CREATE OPERATOR <-> (
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LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = l2_distance,
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||||
COMMUTATOR = '<->'
|
||||
);
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||||
|
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CREATE OPERATOR <#> (
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LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product,
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||||
COMMUTATOR = '<#>'
|
||||
@@ -280,6 +291,11 @@ CREATE OPERATOR CLASS vector_l2_ops
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OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops,
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FUNCTION 1 vector_l2_squared_distance(vector, vector);
|
||||
|
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CREATE OPERATOR CLASS float4_l2_ops
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FOR TYPE float4[] USING hnsw AS
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OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
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FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
|
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|
||||
CREATE OPERATOR CLASS vector_ip_ops
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||||
FOR TYPE vector USING hnsw AS
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||||
OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops,
|
||||
|
||||
60
src/float4.c
Normal file
60
src/float4.c
Normal file
@@ -0,0 +1,60 @@
|
||||
#include "postgres.h"
|
||||
|
||||
#include <math.h>
|
||||
|
||||
#include "utils/array.h"
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||||
|
||||
/*
|
||||
* Get the L2 distance between vectors
|
||||
*/
|
||||
PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_distance);
|
||||
Datum
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||||
float4_l2_distance(PG_FUNCTION_ARGS)
|
||||
{
|
||||
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
|
||||
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
|
||||
float *ax = (float *) ARR_DATA_PTR(a);
|
||||
float *bx = (float *) ARR_DATA_PTR(b);
|
||||
float distance = 0.0;
|
||||
float diff;
|
||||
|
||||
/* TODO Check rank, dimensions, and nulls */
|
||||
int dim = ARR_DIMS(a)[0];
|
||||
|
||||
/* Auto-vectorized */
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
diff = ax[i] - bx[i];
|
||||
distance += diff * diff;
|
||||
}
|
||||
|
||||
PG_RETURN_FLOAT8(sqrt((double) distance));
|
||||
}
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||||
|
||||
/*
|
||||
* Get the L2 squared distance between vectors
|
||||
* This saves a sqrt calculation
|
||||
*/
|
||||
PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_squared_distance);
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||||
Datum
|
||||
float4_l2_squared_distance(PG_FUNCTION_ARGS)
|
||||
{
|
||||
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
|
||||
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
|
||||
float *ax = (float *) ARR_DATA_PTR(a);
|
||||
float *bx = (float *) ARR_DATA_PTR(b);
|
||||
float distance = 0.0;
|
||||
float diff;
|
||||
|
||||
/* TODO Check rank, dimensions, and nulls */
|
||||
int dim = ARR_DIMS(a)[0];
|
||||
|
||||
/* Auto-vectorized */
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
diff = ax[i] - bx[i];
|
||||
distance += diff * diff;
|
||||
}
|
||||
|
||||
PG_RETURN_FLOAT8((double) distance);
|
||||
}
|
||||
11
src/hnsw.c
11
src/hnsw.c
@@ -33,6 +33,12 @@ HnswInit(void)
|
||||
HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
,AccessExclusiveLock
|
||||
#endif
|
||||
);
|
||||
add_int_reloption(hnsw_relopt_kind, "dimensions", "Number of dimensions",
|
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HNSW_DEFAULT_DIMENSIONS, HNSW_MIN_DIMENSIONS, HNSW_MAX_DIMENSIONS
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
,AccessExclusiveLock
|
||||
#endif
|
||||
);
|
||||
|
||||
@@ -91,7 +97,7 @@ hnswcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
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MemSet(&costs, 0, sizeof(costs));
|
||||
|
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index = index_open(path->indexinfo->indexoid, NoLock);
|
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m = HnswGetM(index);
|
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HnswGetMetaPageInfo(index, &m, NULL);
|
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index_close(index, NoLock);
|
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|
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/* Approximate entry level */
|
||||
@@ -125,6 +131,7 @@ hnswoptions(Datum reloptions, bool validate)
|
||||
static const relopt_parse_elt tab[] = {
|
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{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
|
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{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
|
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{"dimensions", RELOPT_TYPE_INT, offsetof(HnswOptions, dimensions)},
|
||||
};
|
||||
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
@@ -196,7 +203,7 @@ hnswhandler(PG_FUNCTION_ARGS)
|
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amroutine->aminsert = hnswinsert;
|
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amroutine->ambulkdelete = hnswbulkdelete;
|
||||
amroutine->amvacuumcleanup = hnswvacuumcleanup;
|
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amroutine->amcanreturn = NULL; /* tuple not included in heapsort */
|
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amroutine->amcanreturn = NULL;
|
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amroutine->amcostestimate = hnswcostestimate;
|
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amroutine->amoptions = hnswoptions;
|
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amroutine->amproperty = NULL; /* TODO AMPROP_DISTANCE_ORDERABLE */
|
||||
|
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20
src/hnsw.h
20
src/hnsw.h
@@ -42,6 +42,9 @@
|
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#define HNSW_DEFAULT_EF_SEARCH 40
|
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#define HNSW_MIN_EF_SEARCH 1
|
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#define HNSW_MAX_EF_SEARCH 1000
|
||||
#define HNSW_DEFAULT_DIMENSIONS -1
|
||||
#define HNSW_MIN_DIMENSIONS 1
|
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#define HNSW_MAX_DIMENSIONS HNSW_MAX_DIM
|
||||
|
||||
/* Tuple types */
|
||||
#define HNSW_ELEMENT_TUPLE_TYPE 1
|
||||
@@ -57,7 +60,7 @@
|
||||
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
|
||||
#define PROGRESS_HNSW_PHASE_LOAD 2
|
||||
|
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
|
||||
#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
|
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
||||
|
||||
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
|
||||
@@ -96,12 +99,13 @@ typedef struct HnswElementData
|
||||
List *heaptids;
|
||||
uint8 level;
|
||||
uint8 deleted;
|
||||
bool loaded;
|
||||
HnswNeighborArray *neighbors;
|
||||
BlockNumber blkno;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber neighborOffno;
|
||||
BlockNumber neighborPage;
|
||||
Vector *vec;
|
||||
Datum value;
|
||||
} HnswElementData;
|
||||
|
||||
typedef HnswElementData * HnswElement;
|
||||
@@ -130,6 +134,7 @@ typedef struct HnswOptions
|
||||
int32 vl_len_; /* varlena header (do not touch directly!) */
|
||||
int m; /* number of connections */
|
||||
int efConstruction; /* size of dynamic candidate list */
|
||||
int dimensions;
|
||||
} HnswOptions;
|
||||
|
||||
typedef struct HnswBuildState
|
||||
@@ -200,7 +205,7 @@ typedef struct HnswElementTupleData
|
||||
ItemPointerData heaptids[HNSW_HEAPTIDS];
|
||||
ItemPointerData neighbortid;
|
||||
uint16 unused2;
|
||||
Vector vec;
|
||||
char value[FLEXIBLE_ARRAY_MEMBER];
|
||||
} HnswElementTupleData;
|
||||
|
||||
typedef HnswElementTupleData * HnswElementTuple;
|
||||
@@ -218,7 +223,6 @@ typedef HnswNeighborTupleData * HnswNeighborTuple;
|
||||
typedef struct HnswScanOpaqueData
|
||||
{
|
||||
bool first;
|
||||
Buffer buf;
|
||||
List *w;
|
||||
MemoryContext tmpCtx;
|
||||
|
||||
@@ -259,15 +263,17 @@ typedef struct HnswVacuumState
|
||||
/* Methods */
|
||||
int HnswGetM(Relation index);
|
||||
int HnswGetEfConstruction(Relation index);
|
||||
FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum);
|
||||
int HnswGetDimensions(Relation index);
|
||||
FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
|
||||
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
||||
void HnswInitPage(Buffer buf, Page page);
|
||||
void HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state);
|
||||
void HnswInit(void);
|
||||
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool inserting, HnswElement skipElement);
|
||||
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
|
||||
HnswElement HnswGetEntryPoint(Relation index);
|
||||
void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
|
||||
HnswElement HnswInitElement(ItemPointer tid, int m, double ml, int maxLevel);
|
||||
void HnswFreeElement(HnswElement element);
|
||||
HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
|
||||
@@ -284,7 +290,7 @@ void HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool
|
||||
void HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
|
||||
void HnswSetElementTuple(HnswElementTuple etup, HnswElement element);
|
||||
void HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
|
||||
void HnswLoadNeighbors(HnswElement element, Relation index);
|
||||
void HnswLoadNeighbors(HnswElement element, Relation index, int m);
|
||||
|
||||
/* Index access methods */
|
||||
IndexBuildResult *hnswbuild(Relation heap, Relation index, IndexInfo *indexInfo);
|
||||
|
||||
@@ -8,6 +8,7 @@
|
||||
#include "lib/pairingheap.h"
|
||||
#include "nodes/pg_list.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "utils/memutils.h"
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
@@ -106,8 +107,6 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
{
|
||||
Relation index = buildstate->index;
|
||||
ForkNumber forkNum = buildstate->forkNum;
|
||||
int dimensions = buildstate->dimensions;
|
||||
Size etupSize;
|
||||
Size maxSize;
|
||||
HnswElementTuple etup;
|
||||
HnswNeighborTuple ntup;
|
||||
@@ -119,10 +118,9 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
|
||||
/* Calculate sizes */
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
|
||||
/* Allocate once */
|
||||
etup = palloc0(etupSize);
|
||||
etup = palloc0(maxSize);
|
||||
ntup = palloc0(maxSize);
|
||||
|
||||
/* Prepare first page */
|
||||
@@ -134,12 +132,14 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
foreach(lc, buildstate->elements)
|
||||
{
|
||||
HnswElement element = lfirst(lc);
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Size combinedSize;
|
||||
|
||||
HnswSetElementTuple(etup, element);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
|
||||
@@ -276,18 +276,15 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
|
||||
int m = buildstate->m;
|
||||
|
||||
/* Detoast once for all calls */
|
||||
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Normalize if needed */
|
||||
if (buildstate->normprocinfo != NULL)
|
||||
{
|
||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
|
||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
|
||||
return false;
|
||||
}
|
||||
|
||||
/* Copy value to element so accessible outside of memory context */
|
||||
memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Insert element in graph */
|
||||
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
||||
|
||||
@@ -363,7 +360,6 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Allocate necessary memory outside of memory context */
|
||||
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
||||
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Use memory context since detoast can allocate */
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
@@ -371,9 +367,8 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
/* Insert tuple */
|
||||
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
||||
|
||||
/* Reset memory context */
|
||||
/* Switch memory context */
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
|
||||
/* Add outside memory context */
|
||||
if (dup != NULL)
|
||||
@@ -381,9 +376,16 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Add to buildstate or free */
|
||||
if (inserted)
|
||||
{
|
||||
element->value = datumCopy(element->value, false, -1);
|
||||
element->loaded = true;
|
||||
buildstate->elements = lappend(buildstate->elements, element);
|
||||
}
|
||||
else
|
||||
HnswFreeElement(element);
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -398,6 +400,7 @@ HnswGetMaxInMemoryElements(int m, double ml, int dimensions)
|
||||
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
|
||||
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
|
||||
elementSize += sizeof(ItemPointerData);
|
||||
/* TODO Handle non-vector types */
|
||||
elementSize += VECTOR_SIZE(dimensions);
|
||||
return (maintenance_work_mem * 1024L) / elementSize;
|
||||
}
|
||||
@@ -415,7 +418,10 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
||||
|
||||
buildstate->m = HnswGetM(index);
|
||||
buildstate->efConstruction = HnswGetEfConstruction(index);
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
buildstate->dimensions = HnswGetDimensions(index);
|
||||
|
||||
if (buildstate->dimensions < 0)
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
|
||||
/* Require column to have dimensions to be indexed */
|
||||
if (buildstate->dimensions < 0)
|
||||
|
||||
@@ -123,7 +123,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
Size minCombinedSize;
|
||||
HnswElementTuple etup;
|
||||
BlockNumber currentPage = insertPage;
|
||||
int dimensions = e->vec->dim;
|
||||
HnswNeighborTuple ntup;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
@@ -132,7 +131,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
@@ -329,7 +328,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
||||
|
||||
/* Get latest neighbors since they may have changed */
|
||||
/* Do not lock yet since selecting neighbors can take time */
|
||||
HnswLoadNeighbors(hc->element, index);
|
||||
HnswLoadNeighbors(hc->element, index, m);
|
||||
|
||||
/*
|
||||
* Could improve performance for vacuuming by checking neighbors
|
||||
@@ -411,7 +410,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
||||
HnswElementTuple etup;
|
||||
int i;
|
||||
|
||||
@@ -492,9 +491,8 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
FmgrInfo *normprocinfo;
|
||||
HnswElement entryPoint;
|
||||
HnswElement element;
|
||||
int m = HnswGetM(index);
|
||||
int m;
|
||||
int efConstruction = HnswGetEfConstruction(index);
|
||||
double ml = HnswGetMl(m);
|
||||
FmgrInfo *procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
HnswElement dup;
|
||||
@@ -511,10 +509,6 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
return false;
|
||||
}
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, ml, HnswGetMaxLevel(m));
|
||||
element->vec = DatumGetVector(value);
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight inserts
|
||||
* before repairing graph. Use a page lock so it does not interfere with
|
||||
@@ -522,8 +516,12 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
*/
|
||||
LockPage(index, HNSW_UPDATE_LOCK, lockmode);
|
||||
|
||||
/* Get entry point */
|
||||
entryPoint = HnswGetEntryPoint(index);
|
||||
/* Get m and entry point */
|
||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||
element->value = value;
|
||||
|
||||
/* Prevent concurrent inserts when likely updating entry point */
|
||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||
|
||||
@@ -19,7 +19,11 @@ GetScanItems(IndexScanDesc scan, Datum q)
|
||||
Oid collation = so->collation;
|
||||
List *ep;
|
||||
List *w;
|
||||
HnswElement entryPoint = HnswGetEntryPoint(index);
|
||||
int m;
|
||||
HnswElement entryPoint;
|
||||
|
||||
/* Get m and entry point */
|
||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
||||
|
||||
if (entryPoint == NULL)
|
||||
return NIL;
|
||||
@@ -28,11 +32,11 @@ GetScanItems(IndexScanDesc scan, Datum q)
|
||||
|
||||
for (int lc = entryPoint->level; lc >= 1; lc--)
|
||||
{
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, false, NULL);
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
|
||||
ep = w;
|
||||
}
|
||||
|
||||
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, false, NULL);
|
||||
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -58,6 +62,33 @@ GetDimensions(Relation index)
|
||||
return dimensions;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get scan value
|
||||
*/
|
||||
static Datum
|
||||
GetScanValue(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
Datum value;
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
|
||||
/* Value should not be compressed or toasted */
|
||||
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
||||
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
||||
|
||||
/* Fine if normalization fails */
|
||||
if (so->normprocinfo != NULL)
|
||||
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
||||
}
|
||||
|
||||
return value;
|
||||
}
|
||||
|
||||
/*
|
||||
* Prepare for an index scan
|
||||
*/
|
||||
@@ -70,7 +101,6 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||
|
||||
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
||||
so->buf = InvalidBuffer;
|
||||
so->first = true;
|
||||
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
||||
"Hnsw scan temporary context",
|
||||
@@ -83,6 +113,12 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
||||
|
||||
scan->opaque = so;
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
return scan;
|
||||
}
|
||||
|
||||
@@ -130,71 +166,46 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (scan->orderByData == NULL)
|
||||
elog(ERROR, "cannot scan hnsw index without order");
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
|
||||
/* Value should not be compressed or toasted */
|
||||
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
||||
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
||||
|
||||
/* Fine if normalization fails */
|
||||
if (so->normprocinfo != NULL)
|
||||
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
||||
}
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
/* Get scan value */
|
||||
value = GetScanValue(scan);
|
||||
|
||||
so->w = GetScanItems(scan, value);
|
||||
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
so->first = false;
|
||||
}
|
||||
|
||||
while (list_length(so->w) > 0)
|
||||
{
|
||||
HnswCandidate *hc = llast(so->w);
|
||||
ItemPointer tid;
|
||||
BlockNumber indexblkno;
|
||||
ItemPointer heaptid;
|
||||
|
||||
/* Move to next element if no valid heap tids */
|
||||
/* Move to next element if no valid heap TIDs */
|
||||
if (list_length(hc->element->heaptids) == 0)
|
||||
{
|
||||
so->w = list_delete_last(so->w);
|
||||
continue;
|
||||
}
|
||||
|
||||
tid = llast(hc->element->heaptids);
|
||||
indexblkno = hc->element->blkno;
|
||||
heaptid = llast(hc->element->heaptids);
|
||||
|
||||
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
||||
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan->xs_heaptid = *tid;
|
||||
scan->xs_heaptid = *heaptid;
|
||||
#else
|
||||
scan->xs_ctup.t_self = *tid;
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
#endif
|
||||
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
/*
|
||||
* An index scan must maintain a pin on the index page holding the
|
||||
* item last returned by amgettuple
|
||||
* Typically, an index scan must maintain a pin on the index page
|
||||
* holding the item last returned by amgettuple. However, this is not
|
||||
* needed with the current vacuum strategy, which ensures scans do not
|
||||
* visit tuples in danger of being marked as deleted.
|
||||
*
|
||||
* https://www.postgresql.org/docs/current/index-locking.html
|
||||
*/
|
||||
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||
|
||||
scan->xs_recheckorderby = false;
|
||||
return true;
|
||||
@@ -212,9 +223,8 @@ hnswendscan(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
|
||||
/* Release pin */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
MemoryContextDelete(so->tmpCtx);
|
||||
|
||||
|
||||
122
src/hnswutils.c
122
src/hnswutils.c
@@ -4,6 +4,7 @@
|
||||
|
||||
#include "hnsw.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "vector.h"
|
||||
|
||||
/*
|
||||
@@ -34,16 +35,30 @@ HnswGetEfConstruction(Relation index)
|
||||
return HNSW_DEFAULT_EF_CONSTRUCTION;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the number of dimensions in the index
|
||||
*/
|
||||
int
|
||||
HnswGetDimensions(Relation index)
|
||||
{
|
||||
HnswOptions *opts = (HnswOptions *) index->rd_options;
|
||||
|
||||
if (opts)
|
||||
return opts->dimensions;
|
||||
|
||||
return HNSW_DEFAULT_DIMENSIONS;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get proc
|
||||
*/
|
||||
FmgrInfo *
|
||||
HnswOptionalProcInfo(Relation rel, uint16 procnum)
|
||||
HnswOptionalProcInfo(Relation index, uint16 procnum)
|
||||
{
|
||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||
return NULL;
|
||||
|
||||
return index_getprocinfo(rel, 1, procnum);
|
||||
return index_getprocinfo(index, 1, procnum);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -143,6 +158,17 @@ HnswInitNeighbors(HnswElement element, int m)
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
* Free neighbors
|
||||
*/
|
||||
static void
|
||||
HnswFreeNeighbors(HnswElement element)
|
||||
{
|
||||
for (int lc = 0; lc <= element->level; lc++)
|
||||
pfree(element->neighbors[lc].items);
|
||||
pfree(element->neighbors);
|
||||
}
|
||||
|
||||
/*
|
||||
* Allocate an element
|
||||
*/
|
||||
@@ -174,11 +200,10 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
|
||||
void
|
||||
HnswFreeElement(HnswElement element)
|
||||
{
|
||||
HnswFreeNeighbors(element);
|
||||
list_free_deep(element->heaptids);
|
||||
for (int lc = 0; lc <= element->level; lc++)
|
||||
pfree(element->neighbors[lc].items);
|
||||
pfree(element->neighbors);
|
||||
pfree(element->vec);
|
||||
if (element->loaded)
|
||||
pfree(DatumGetPointer(element->value));
|
||||
pfree(element);
|
||||
}
|
||||
|
||||
@@ -205,30 +230,48 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
||||
element->blkno = blkno;
|
||||
element->offno = offno;
|
||||
element->neighbors = NULL;
|
||||
element->vec = NULL;
|
||||
element->loaded = false;
|
||||
return element;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the metapage info
|
||||
*/
|
||||
void
|
||||
HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
HnswMetaPage metap;
|
||||
|
||||
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = HnswPageGetMeta(page);
|
||||
|
||||
if (m != NULL)
|
||||
*m = metap->m;
|
||||
|
||||
if (entryPoint != NULL)
|
||||
{
|
||||
if (BlockNumberIsValid(metap->entryBlkno))
|
||||
*entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
||||
else
|
||||
*entryPoint = NULL;
|
||||
}
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the entry point
|
||||
*/
|
||||
HnswElement
|
||||
HnswGetEntryPoint(Relation index)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
HnswMetaPage metap;
|
||||
HnswElement entryPoint = NULL;
|
||||
HnswElement entryPoint;
|
||||
|
||||
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = HnswPageGetMeta(page);
|
||||
|
||||
if (BlockNumberIsValid(metap->entryBlkno))
|
||||
entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
HnswGetMetaPageInfo(index, NULL, &entryPoint);
|
||||
|
||||
return entryPoint;
|
||||
}
|
||||
@@ -297,7 +340,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
||||
else
|
||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||
}
|
||||
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
||||
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -337,10 +380,9 @@ HnswSetNeighborTuple(HnswNeighborTuple ntup, HnswElement e, int m)
|
||||
* Load neighbors from page
|
||||
*/
|
||||
static void
|
||||
LoadNeighborsFromPage(HnswElement element, Relation index, Page page)
|
||||
LoadNeighborsFromPage(HnswElement element, Relation index, Page page, int m)
|
||||
{
|
||||
HnswNeighborTuple ntup = (HnswNeighborTuple) PageGetItem(page, PageGetItemId(page, element->neighborOffno));
|
||||
int m = HnswGetM(index);
|
||||
int neighborCount = (element->level + 2) * m;
|
||||
|
||||
Assert(HnswIsNeighborTuple(ntup));
|
||||
@@ -381,7 +423,7 @@ LoadNeighborsFromPage(HnswElement element, Relation index, Page page)
|
||||
* Load neighbors
|
||||
*/
|
||||
void
|
||||
HnswLoadNeighbors(HnswElement element, Relation index)
|
||||
HnswLoadNeighbors(HnswElement element, Relation index, int m)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
@@ -390,7 +432,7 @@ HnswLoadNeighbors(HnswElement element, Relation index)
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
|
||||
LoadNeighborsFromPage(element, index, page);
|
||||
LoadNeighborsFromPage(element, index, page, m);
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -421,8 +463,10 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
||||
|
||||
if (loadVec)
|
||||
{
|
||||
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
||||
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
||||
Datum value = PointerGetDatum(&etup->value);
|
||||
|
||||
element->value = datumCopy(value, false, -1);
|
||||
element->loaded = true;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -450,7 +494,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
|
||||
/* Calculate distance */
|
||||
if (distance != NULL)
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -461,7 +505,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
static float
|
||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||
{
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -543,7 +587,7 @@ AddToVisited(HTAB *v, HnswCandidate * hc, Relation index, bool *found)
|
||||
* Algorithm 2 from paper
|
||||
*/
|
||||
List *
|
||||
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool inserting, HnswElement skipElement)
|
||||
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
|
||||
{
|
||||
ListCell *lc2;
|
||||
|
||||
@@ -598,7 +642,7 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
||||
break;
|
||||
|
||||
if (c->element->neighbors == NULL)
|
||||
HnswLoadNeighbors(c->element, index);
|
||||
HnswLoadNeighbors(c->element, index, m);
|
||||
|
||||
/* Get the neighborhood at layer lc */
|
||||
neighborhood = &c->element->neighbors[lc];
|
||||
@@ -696,7 +740,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
||||
}
|
||||
}
|
||||
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -779,7 +823,7 @@ HnswFindDuplicate(HnswElement e)
|
||||
HnswCandidate *neighbor = &neighbors->items[i];
|
||||
|
||||
/* Exit early since ordered by distance */
|
||||
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
||||
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
||||
break;
|
||||
|
||||
/* Check for space */
|
||||
@@ -854,13 +898,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
/* Load elements on insert */
|
||||
if (index != NULL)
|
||||
{
|
||||
Datum q = PointerGetDatum(hc->element->vec);
|
||||
Datum q = hc->element->value;
|
||||
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
{
|
||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||
|
||||
if (hc3->element->vec == NULL)
|
||||
if (!hc3->element->loaded)
|
||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||
else
|
||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||
@@ -942,7 +986,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *w;
|
||||
int level = element->level;
|
||||
int entryLevel;
|
||||
Datum q = PointerGetDatum(element->vec);
|
||||
Datum q = element->value;
|
||||
HnswElement skipElement = existing ? element : NULL;
|
||||
|
||||
/* No neighbors if no entry point */
|
||||
@@ -956,7 +1000,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
/* 1st phase: greedy search to insert level */
|
||||
for (int lc = entryLevel; lc >= level + 1; lc--)
|
||||
{
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, true, skipElement);
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, true, skipElement);
|
||||
ep = w;
|
||||
}
|
||||
|
||||
@@ -974,7 +1018,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *neighbors;
|
||||
List *lw;
|
||||
|
||||
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, true, skipElement);
|
||||
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, m, true, skipElement);
|
||||
|
||||
/* Elements being deleted or skipped can help with search */
|
||||
/* but should be removed before selecting neighbors */
|
||||
|
||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
|
||||
if (itemUpdated)
|
||||
{
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
||||
|
||||
/* Mark rest as invalid */
|
||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||
@@ -330,7 +330,10 @@ RepairGraph(HnswVacuumState * vacuumstate)
|
||||
BufferAccessStrategy bas = vacuumstate->bas;
|
||||
BlockNumber blkno = HNSW_HEAD_BLKNO;
|
||||
|
||||
/* Wait for inserts to complete */
|
||||
/*
|
||||
* Wait for inserts to complete. Inserts before this point may have
|
||||
* neighbors about to be deleted. Inserts after this point will not.
|
||||
*/
|
||||
LockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||
UnlockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||
|
||||
@@ -443,7 +446,11 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
Relation index = vacuumstate->index;
|
||||
BufferAccessStrategy bas = vacuumstate->bas;
|
||||
|
||||
/* Wait for selects to complete */
|
||||
/*
|
||||
* Wait for index scans to complete. Scans before this point may contain
|
||||
* tuples about to be deleted. Scans after this point will not, since the
|
||||
* graph has been repaired.
|
||||
*/
|
||||
LockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||
UnlockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||
|
||||
@@ -478,6 +485,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
HnswNeighborTuple ntup;
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Datum value;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
BlockNumber neighborPage;
|
||||
@@ -501,8 +509,11 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||
continue;
|
||||
|
||||
/* Get datum */
|
||||
value = PointerGetDatum(&etup->value);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||
|
||||
/* Get neighbor page */
|
||||
@@ -525,7 +536,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
|
||||
/* Overwrite element */
|
||||
etup->deleted = 1;
|
||||
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
||||
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
||||
|
||||
/* Overwrite neighbors */
|
||||
for (int i = 0; i < ntup->count; i++)
|
||||
@@ -582,7 +593,6 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
||||
vacuumstate->stats = stats;
|
||||
vacuumstate->callback = callback;
|
||||
vacuumstate->callback_state = callback_state;
|
||||
vacuumstate->m = HnswGetM(index);
|
||||
vacuumstate->efConstruction = HnswGetEfConstruction(index);
|
||||
vacuumstate->bas = GetAccessStrategy(BAS_BULKREAD);
|
||||
vacuumstate->procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||
@@ -592,6 +602,9 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
||||
"Hnsw vacuum temporary context",
|
||||
ALLOCSET_DEFAULT_SIZES);
|
||||
|
||||
/* Get m from metapage */
|
||||
HnswGetMetaPageInfo(index, &vacuumstate->m, NULL);
|
||||
|
||||
/* Create hash table */
|
||||
hash_ctl.keysize = sizeof(ItemPointerData);
|
||||
hash_ctl.entrysize = sizeof(ItemPointerData);
|
||||
|
||||
@@ -10,8 +10,8 @@
|
||||
#include "ivfflat.h"
|
||||
#include "miscadmin.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/memutils.h"
|
||||
#include "tcop/tcopprot.h"
|
||||
#include "utils/memutils.h"
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
#include "utils/backend_progress.h"
|
||||
@@ -506,29 +506,30 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
OffsetNumber offno;
|
||||
Size itemsz;
|
||||
IvfflatList list;
|
||||
|
||||
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||
list = palloc(itemsz);
|
||||
list = palloc0(BLCKSZ);
|
||||
|
||||
buf = IvfflatNewBuffer(index, forkNum);
|
||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||
|
||||
for (int i = 0; i < lists; i++)
|
||||
{
|
||||
OffsetNumber offno;
|
||||
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
|
||||
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
|
||||
|
||||
/* Load list */
|
||||
list->startPage = InvalidBlockNumber;
|
||||
list->insertPage = InvalidBlockNumber;
|
||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||
memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
|
||||
|
||||
/* Ensure free space */
|
||||
if (PageGetFreeSpace(page) < itemsz)
|
||||
if (PageGetFreeSpace(page) < listSize)
|
||||
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
||||
|
||||
/* Add the item */
|
||||
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false);
|
||||
offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
|
||||
if (offno == InvalidOffsetNumber)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
|
||||
@@ -71,7 +71,7 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
||||
int lists;
|
||||
double ratio;
|
||||
double spc_seq_page_cost;
|
||||
Relation indexRel;
|
||||
Relation index;
|
||||
#if PG_VERSION_NUM < 120000
|
||||
List *qinfos;
|
||||
#endif
|
||||
@@ -89,9 +89,9 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
||||
|
||||
MemSet(&costs, 0, sizeof(costs));
|
||||
|
||||
indexRel = index_open(path->indexinfo->indexoid, NoLock);
|
||||
lists = IvfflatGetLists(indexRel);
|
||||
index_close(indexRel, NoLock);
|
||||
index = index_open(path->indexinfo->indexoid, NoLock);
|
||||
IvfflatGetMetaPageInfo(index, &lists, NULL);
|
||||
index_close(index, NoLock);
|
||||
|
||||
/* Get the ratio of lists that we need to visit */
|
||||
ratio = ((double) ivfflat_probes) / lists;
|
||||
|
||||
@@ -52,7 +52,7 @@
|
||||
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
||||
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
||||
|
||||
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim))
|
||||
#define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
|
||||
|
||||
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
||||
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
||||
@@ -229,7 +229,7 @@ typedef struct IvfflatListData
|
||||
{
|
||||
BlockNumber startPage;
|
||||
BlockNumber insertPage;
|
||||
Vector center;
|
||||
char center[FLEXIBLE_ARRAY_MEMBER];
|
||||
} IvfflatListData;
|
||||
|
||||
typedef IvfflatListData * IvfflatList;
|
||||
@@ -244,8 +244,10 @@ typedef struct IvfflatScanList
|
||||
typedef struct IvfflatScanOpaqueData
|
||||
{
|
||||
int probes;
|
||||
int dimensions;
|
||||
bool first;
|
||||
Buffer buf;
|
||||
ItemPointerData heaptid;
|
||||
|
||||
/* Sorting */
|
||||
Tuplesortstate *sortstate;
|
||||
@@ -275,9 +277,10 @@ VectorArray VectorArrayInit(int maxlen, int dimensions);
|
||||
void VectorArrayFree(VectorArray arr);
|
||||
void PrintVectorArray(char *msg, VectorArray arr);
|
||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum);
|
||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||
int IvfflatGetLists(Relation index);
|
||||
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
||||
void IvfflatUpdateList(Relation index, ListInfo listInfo, BlockNumber insertPage, BlockNumber originalInsertPage, BlockNumber startPage, ForkNumber forkNum);
|
||||
void IvfflatCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||
void IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state, ForkNumber forkNum);
|
||||
|
||||
@@ -11,36 +11,37 @@
|
||||
* Find the list that minimizes the distance function
|
||||
*/
|
||||
static void
|
||||
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||
FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
IvfflatList list;
|
||||
double distance;
|
||||
double minDistance = DBL_MAX;
|
||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||
FmgrInfo *procinfo;
|
||||
Oid collation;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
/* Avoid compiler warning */
|
||||
listInfo->blkno = nextblkno;
|
||||
listInfo->offno = FirstOffsetNumber;
|
||||
|
||||
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC);
|
||||
collation = rel->rd_indcollation[0];
|
||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||
collation = index->rd_indcollation[0];
|
||||
|
||||
/* Search all list pages */
|
||||
while (BlockNumberIsValid(nextblkno))
|
||||
{
|
||||
cbuf = ReadBuffer(rel, nextblkno);
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
cbuf = ReadBuffer(index, nextblkno);
|
||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||
cpage = BufferGetPage(cbuf);
|
||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
IvfflatList list;
|
||||
double distance;
|
||||
|
||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
||||
|
||||
@@ -63,7 +64,7 @@ FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo *
|
||||
* Insert a tuple into the index
|
||||
*/
|
||||
static void
|
||||
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||
InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||
{
|
||||
IndexTuple itup;
|
||||
Datum value;
|
||||
@@ -80,20 +81,20 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Normalize if needed */
|
||||
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC);
|
||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||
if (normprocinfo != NULL)
|
||||
{
|
||||
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL))
|
||||
if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
|
||||
return;
|
||||
}
|
||||
|
||||
/* Find the insert page - sets the page and list info */
|
||||
FindInsertPage(rel, values, &insertPage, &listInfo);
|
||||
FindInsertPage(index, values, &insertPage, &listInfo);
|
||||
Assert(BlockNumberIsValid(insertPage));
|
||||
originalInsertPage = insertPage;
|
||||
|
||||
/* Form tuple */
|
||||
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull);
|
||||
itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
|
||||
itup->t_tid = *heap_tid;
|
||||
|
||||
/* Get tuple size */
|
||||
@@ -103,10 +104,10 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
||||
/* Find a page to insert the item */
|
||||
for (;;)
|
||||
{
|
||||
buf = ReadBuffer(rel, insertPage);
|
||||
buf = ReadBuffer(index, insertPage);
|
||||
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
||||
|
||||
state = GenericXLogStart(rel);
|
||||
state = GenericXLogStart(index);
|
||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||
|
||||
if (PageGetFreeSpace(page) >= itemsz)
|
||||
@@ -126,9 +127,9 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
||||
Page newpage;
|
||||
|
||||
/* Add a new page */
|
||||
LockRelationForExtension(rel, ExclusiveLock);
|
||||
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM);
|
||||
UnlockRelationForExtension(rel, ExclusiveLock);
|
||||
LockRelationForExtension(index, ExclusiveLock);
|
||||
newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
|
||||
UnlockRelationForExtension(index, ExclusiveLock);
|
||||
|
||||
/* Init new page */
|
||||
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
||||
@@ -149,7 +150,7 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
/* Prepare new buffer */
|
||||
state = GenericXLogStart(rel);
|
||||
state = GenericXLogStart(index);
|
||||
buf = newbuf;
|
||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||
break;
|
||||
@@ -158,13 +159,13 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
||||
|
||||
/* Add to next offset */
|
||||
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel));
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
IvfflatCommitBuffer(buf, state);
|
||||
|
||||
/* Update the insert page */
|
||||
if (insertPage != originalInsertPage)
|
||||
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||
IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
@@ -17,10 +17,6 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
||||
FmgrInfo *procinfo;
|
||||
Oid collation;
|
||||
int64 j;
|
||||
double distance;
|
||||
double sum;
|
||||
double choice;
|
||||
Vector *vec;
|
||||
float *weight = palloc(samples->length * sizeof(float));
|
||||
int numCenters = centers->maxlen;
|
||||
int numSamples = samples->length;
|
||||
@@ -33,17 +29,21 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
||||
centers->length++;
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
weight[j] = DBL_MAX;
|
||||
weight[j] = FLT_MAX;
|
||||
|
||||
for (int i = 0; i < numCenters; i++)
|
||||
{
|
||||
double sum;
|
||||
double choice;
|
||||
|
||||
CHECK_FOR_INTERRUPTS();
|
||||
|
||||
sum = 0.0;
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
vec = VectorArrayGet(samples, j);
|
||||
Vector *vec = VectorArrayGet(samples, j);
|
||||
double distance;
|
||||
|
||||
/* Only need to compute distance for new center */
|
||||
/* TODO Use triangle inequality to reduce distance calculations */
|
||||
@@ -112,7 +112,6 @@ CompareVectors(const void *a, const void *b)
|
||||
static void
|
||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
Vector *vec;
|
||||
int dimensions = centers->dim;
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||
@@ -123,7 +122,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||
for (int i = 0; i < samples->length; i++)
|
||||
{
|
||||
vec = VectorArrayGet(samples, i);
|
||||
Vector *vec = VectorArrayGet(samples, i);
|
||||
|
||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||
{
|
||||
@@ -136,7 +135,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Fill remaining with random data */
|
||||
while (centers->length < centers->maxlen)
|
||||
{
|
||||
vec = VectorArrayGet(centers, centers->length);
|
||||
Vector *vec = VectorArrayGet(centers, centers->length);
|
||||
|
||||
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
||||
vec->dim = dimensions;
|
||||
@@ -168,7 +167,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
Oid collation;
|
||||
Vector *vec;
|
||||
Vector *newCenter;
|
||||
int iteration;
|
||||
int64 j;
|
||||
int64 k;
|
||||
int dimensions = centers->dim;
|
||||
@@ -182,14 +180,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
float *s;
|
||||
float *halfcdist;
|
||||
float *newcdist;
|
||||
int changes;
|
||||
double minDistance;
|
||||
int closestCenter;
|
||||
double distance;
|
||||
bool rj;
|
||||
bool rjreset;
|
||||
double dxcx;
|
||||
double dxc;
|
||||
|
||||
/* Calculate allocation sizes */
|
||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||
@@ -247,14 +237,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
minDistance = DBL_MAX;
|
||||
closestCenter = 0;
|
||||
float minDistance = FLT_MAX;
|
||||
int closestCenter = 0;
|
||||
|
||||
/* Find closest center */
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
/* TODO Use Lemma 1 in k-means++ initialization */
|
||||
distance = lowerBound[j * numCenters + k];
|
||||
float distance = lowerBound[j * numCenters + k];
|
||||
|
||||
if (distance < minDistance)
|
||||
{
|
||||
@@ -268,13 +258,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
}
|
||||
|
||||
/* Give 500 iterations to converge */
|
||||
for (iteration = 0; iteration < 500; iteration++)
|
||||
for (int iteration = 0; iteration < 500; iteration++)
|
||||
{
|
||||
int changes = 0;
|
||||
bool rjreset;
|
||||
|
||||
/* Can take a while, so ensure we can interrupt */
|
||||
CHECK_FOR_INTERRUPTS();
|
||||
|
||||
changes = 0;
|
||||
|
||||
/* Step 1: For all centers, compute distance */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
{
|
||||
@@ -282,7 +273,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (k = j + 1; k < numCenters; k++)
|
||||
{
|
||||
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
|
||||
halfcdist[j * numCenters + k] = distance;
|
||||
halfcdist[k * numCenters + j] = distance;
|
||||
}
|
||||
@@ -291,10 +283,12 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* For all centers c, compute s(c) */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
{
|
||||
minDistance = DBL_MAX;
|
||||
float minDistance = FLT_MAX;
|
||||
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
float distance;
|
||||
|
||||
if (j == k)
|
||||
continue;
|
||||
|
||||
@@ -310,6 +304,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
bool rj;
|
||||
|
||||
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
||||
if (upperBound[j] <= s[closestCenters[j]])
|
||||
continue;
|
||||
@@ -318,6 +314,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
float dxcx;
|
||||
|
||||
/* Step 3: For all remaining points x and centers c */
|
||||
if (k == closestCenters[j])
|
||||
continue;
|
||||
@@ -347,7 +345,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Step 3b */
|
||||
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
||||
{
|
||||
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
|
||||
/* d(x,c) calculated */
|
||||
lowerBound[j * numCenters + k] = dxc;
|
||||
@@ -361,7 +359,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
changes++;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -378,6 +375,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
int closestCenter;
|
||||
|
||||
vec = VectorArrayGet(samples, j);
|
||||
closestCenter = closestCenters[j];
|
||||
|
||||
@@ -426,7 +425,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||
float distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||
|
||||
if (distance < 0)
|
||||
distance = 0;
|
||||
@@ -442,7 +441,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
/* Step 7 */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions));
|
||||
VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
|
||||
|
||||
if (changes == 0 && iteration != 0)
|
||||
break;
|
||||
@@ -465,9 +464,6 @@ static void
|
||||
CheckCenters(Relation index, VectorArray centers)
|
||||
{
|
||||
FmgrInfo *normprocinfo;
|
||||
Oid collation;
|
||||
Vector *vec;
|
||||
double norm;
|
||||
|
||||
if (centers->length != centers->maxlen)
|
||||
elog(ERROR, "Not enough centers. Please report a bug.");
|
||||
@@ -475,7 +471,7 @@ CheckCenters(Relation index, VectorArray centers)
|
||||
/* Ensure no NaN or infinite values */
|
||||
for (int i = 0; i < centers->length; i++)
|
||||
{
|
||||
vec = VectorArrayGet(centers, i);
|
||||
Vector *vec = VectorArrayGet(centers, i);
|
||||
|
||||
for (int j = 0; j < vec->dim; j++)
|
||||
{
|
||||
@@ -501,11 +497,12 @@ CheckCenters(Relation index, VectorArray centers)
|
||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||
if (normprocinfo != NULL)
|
||||
{
|
||||
collation = index->rd_indcollation[0];
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
|
||||
for (int i = 0; i < centers->length; i++)
|
||||
{
|
||||
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||
double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||
|
||||
if (norm == 0)
|
||||
elog(ERROR, "Zero norm detected. Please report a bug.");
|
||||
}
|
||||
|
||||
125
src/ivfscan.c
125
src/ivfscan.c
@@ -31,36 +31,36 @@ CompareLists(const pairingheap_node *a, const pairingheap_node *b, void *arg)
|
||||
static void
|
||||
GetScanLists(IndexScanDesc scan, Datum value)
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
IvfflatList list;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||
int listCount = 0;
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
double distance;
|
||||
IvfflatScanList *scanlist;
|
||||
double maxDistance = DBL_MAX;
|
||||
|
||||
/* Search all list pages */
|
||||
while (BlockNumberIsValid(nextblkno))
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
cbuf = ReadBuffer(scan->indexRelation, nextblkno);
|
||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||
cpage = BufferGetPage(cbuf);
|
||||
|
||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
IvfflatList list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
double distance;
|
||||
|
||||
/* Use procinfo from the index instead of scan key for performance */
|
||||
distance = DatumGetFloat8(FunctionCall2Coll(so->procinfo, so->collation, PointerGetDatum(&list->center), value));
|
||||
|
||||
if (listCount < so->probes)
|
||||
{
|
||||
IvfflatScanList *scanlist;
|
||||
|
||||
scanlist = &so->lists[listCount];
|
||||
scanlist->startPage = list->startPage;
|
||||
scanlist->distance = distance;
|
||||
@@ -75,6 +75,8 @@ GetScanLists(IndexScanDesc scan, Datum value)
|
||||
}
|
||||
else if (distance < maxDistance)
|
||||
{
|
||||
IvfflatScanList *scanlist;
|
||||
|
||||
/* Remove */
|
||||
scanlist = (IvfflatScanList *) pairingheap_remove_first(so->listQueue);
|
||||
|
||||
@@ -101,14 +103,6 @@ static void
|
||||
GetScanItems(IndexScanDesc scan, Datum value)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
Buffer buf;
|
||||
Page page;
|
||||
IndexTuple itup;
|
||||
BlockNumber searchPage;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
Datum datum;
|
||||
bool isnull;
|
||||
TupleDesc tupdesc = RelationGetDescr(scan->indexRelation);
|
||||
double tuples = 0;
|
||||
|
||||
@@ -128,19 +122,32 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
/* Search closest probes lists */
|
||||
while (!pairingheap_is_empty(so->listQueue))
|
||||
{
|
||||
searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
||||
BlockNumber searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
||||
|
||||
/* Search all entry pages for list */
|
||||
while (BlockNumberIsValid(searchPage))
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
buf = ReadBufferExtended(scan->indexRelation, MAIN_FORKNUM, searchPage, RBM_NORMAL, bas);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
maxoffno = PageGetMaxOffsetNumber(page);
|
||||
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
itup = (IndexTuple) PageGetItem(page, PageGetItemId(page, offno));
|
||||
IndexTuple itup;
|
||||
Datum datum;
|
||||
bool isnull;
|
||||
ItemId itemid = PageGetItemId(page, offno);
|
||||
|
||||
/* Skip dead tuples */
|
||||
if (scan->ignore_killed_tuples && ItemIdIsDead(itemid))
|
||||
continue;
|
||||
|
||||
itup = (IndexTuple) PageGetItem(page, itemid);
|
||||
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
||||
|
||||
/*
|
||||
@@ -181,26 +188,52 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
}
|
||||
|
||||
/*
|
||||
* Get dimensions from metapage
|
||||
* Mark prior tuple as dead
|
||||
*/
|
||||
static int
|
||||
GetDimensions(Relation index)
|
||||
static void
|
||||
MarkPriorTupleDead(IndexScanDesc scan)
|
||||
{
|
||||
Buffer buf;
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
Buffer buf = so->buf;
|
||||
Page page;
|
||||
IvfflatMetaPage metap;
|
||||
int dimensions;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
||||
/* Safety check */
|
||||
if (!BufferIsValid(so->buf) || !ItemPointerIsValid(&so->heaptid))
|
||||
return;
|
||||
|
||||
/* Only a shared locked is needed for ItemIdMarkDead */
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = IvfflatPageGetMeta(page);
|
||||
maxoffno = PageGetMaxOffsetNumber(page);
|
||||
|
||||
dimensions = metap->dimensions;
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
ItemId itemid = PageGetItemId(page, offno);
|
||||
IndexTuple itup = (IndexTuple) PageGetItem(page, itemid);
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
/*
|
||||
* Find tuple. Since buffer has been pinned, tuple cannot have been
|
||||
* vacuumed (and heap TID reused).
|
||||
*/
|
||||
if (ItemPointerEquals(&itup->t_tid, &so->heaptid))
|
||||
{
|
||||
/*
|
||||
* Make sure tuple has not already been marked dead to avoid extra
|
||||
* WAL if wal_log_hints or data checksums enabled
|
||||
*/
|
||||
if (!ItemIdIsDead(itemid))
|
||||
{
|
||||
ItemIdMarkDead(itemid);
|
||||
MarkBufferDirtyHint(buf, true);
|
||||
}
|
||||
|
||||
return dimensions;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/* Unlock buffer */
|
||||
LockBuffer(buf, BUFFER_LOCK_UNLOCK);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -212,6 +245,7 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
IndexScanDesc scan;
|
||||
IvfflatScanOpaque so;
|
||||
int lists;
|
||||
int dimensions;
|
||||
AttrNumber attNums[] = {1};
|
||||
Oid sortOperators[] = {Float8LessOperator};
|
||||
Oid sortCollations[] = {InvalidOid};
|
||||
@@ -219,7 +253,9 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
int probes = ivfflat_probes;
|
||||
|
||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||
lists = IvfflatGetLists(scan->indexRelation);
|
||||
|
||||
/* Get lists and dimensions from metapage */
|
||||
IvfflatGetMetaPageInfo(index, &lists, &dimensions);
|
||||
|
||||
if (probes > lists)
|
||||
probes = lists;
|
||||
@@ -227,7 +263,9 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
||||
so->buf = InvalidBuffer;
|
||||
so->first = true;
|
||||
ItemPointerSetInvalid(&so->heaptid);
|
||||
so->probes = probes;
|
||||
so->dimensions = dimensions;
|
||||
|
||||
/* Set support functions */
|
||||
so->procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||
@@ -241,7 +279,7 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
so->tupdesc = CreateTemplateTupleDesc(3, false);
|
||||
#endif
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "tid", TIDOID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
|
||||
|
||||
/* Prep sort */
|
||||
@@ -274,6 +312,7 @@ ivfflatrescan(IndexScanDesc scan, ScanKey keys, int nkeys, ScanKey orderbys, int
|
||||
#endif
|
||||
|
||||
so->first = true;
|
||||
ItemPointerSetInvalid(&so->heaptid);
|
||||
pairingheap_reset(so->listQueue);
|
||||
|
||||
if (keys && scan->numberOfKeys > 0)
|
||||
@@ -309,7 +348,7 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
elog(ERROR, "cannot scan ivfflat index without order");
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
value = PointerGetDatum(InitVector(so->dimensions));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
@@ -331,18 +370,28 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (value != scan->orderByData->sk_argument)
|
||||
pfree(DatumGetPointer(value));
|
||||
}
|
||||
else
|
||||
{
|
||||
/* Mark prior tuple as dead */
|
||||
if (scan->kill_prior_tuple)
|
||||
MarkPriorTupleDead(scan);
|
||||
}
|
||||
|
||||
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
||||
{
|
||||
ItemPointer tid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan->xs_heaptid = *tid;
|
||||
scan->xs_heaptid = *heaptid;
|
||||
#else
|
||||
scan->xs_ctup.t_self = *tid;
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
#endif
|
||||
|
||||
/* Keep track of info needed to mark tuple as dead */
|
||||
so->heaptid = *heaptid;
|
||||
|
||||
/* Unpin buffer */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
|
||||
@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
|
||||
* Get proc
|
||||
*/
|
||||
FmgrInfo *
|
||||
IvfflatOptionalProcInfo(Relation rel, uint16 procnum)
|
||||
IvfflatOptionalProcInfo(Relation index, uint16 procnum)
|
||||
{
|
||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||
return NULL;
|
||||
|
||||
return index_getprocinfo(rel, 1, procnum);
|
||||
return index_getprocinfo(index, 1, procnum);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -172,6 +172,29 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
||||
*buf = newbuf;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the metapage info
|
||||
*/
|
||||
void
|
||||
IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
IvfflatMetaPage metap;
|
||||
|
||||
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = IvfflatPageGetMeta(page);
|
||||
|
||||
*lists = metap->lists;
|
||||
|
||||
if (dimensions != NULL)
|
||||
*dimensions = metap->dimensions;
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
|
||||
/*
|
||||
* Update the start or insert page of a list
|
||||
*/
|
||||
|
||||
@@ -695,6 +695,8 @@ vector_spherical_distance(PG_FUNCTION_ARGS)
|
||||
{
|
||||
Vector *a = PG_GETARG_VECTOR_P(0);
|
||||
Vector *b = PG_GETARG_VECTOR_P(1);
|
||||
float *ax = a->x;
|
||||
float *bx = b->x;
|
||||
float dp = 0.0;
|
||||
double distance;
|
||||
|
||||
@@ -702,7 +704,7 @@ vector_spherical_distance(PG_FUNCTION_ARGS)
|
||||
|
||||
/* Auto-vectorized */
|
||||
for (int i = 0; i < a->dim; i++)
|
||||
dp += a->x[i] * b->x[i];
|
||||
dp += ax[i] * bx[i];
|
||||
|
||||
distance = (double) dp;
|
||||
|
||||
|
||||
@@ -54,21 +54,21 @@ SELECT vector_norm('[3e37,4e37]')::real;
|
||||
5e+37
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[0,0]', '[3,4]');
|
||||
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||
l2_distance
|
||||
-------------
|
||||
5
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[0,0]', '[0,1]');
|
||||
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||
l2_distance
|
||||
-------------
|
||||
1
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[1,2]', '[3]');
|
||||
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||
ERROR: different vector dimensions 2 and 1
|
||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
||||
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||
l2_distance
|
||||
-------------
|
||||
Infinity
|
||||
@@ -106,6 +106,12 @@ SELECT cosine_distance('[1,1]', '[1,1]');
|
||||
0
|
||||
(1 row)
|
||||
|
||||
SELECT cosine_distance('[1,0]', '[0,2]');
|
||||
cosine_distance
|
||||
-----------------
|
||||
1
|
||||
(1 row)
|
||||
|
||||
SELECT cosine_distance('[1,1]', '[-1,-1]');
|
||||
cosine_distance
|
||||
-----------------
|
||||
|
||||
@@ -13,10 +13,10 @@ SELECT vector_norm('[3,4]');
|
||||
SELECT vector_norm('[0,1]');
|
||||
SELECT vector_norm('[3e37,4e37]')::real;
|
||||
|
||||
SELECT l2_distance('[0,0]', '[3,4]');
|
||||
SELECT l2_distance('[0,0]', '[0,1]');
|
||||
SELECT l2_distance('[1,2]', '[3]');
|
||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
||||
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||
|
||||
SELECT inner_product('[1,2]', '[3,4]');
|
||||
SELECT inner_product('[1,2]', '[3]');
|
||||
@@ -25,6 +25,7 @@ SELECT inner_product('[3e38]', '[3e38]');
|
||||
SELECT cosine_distance('[1,2]', '[2,4]');
|
||||
SELECT cosine_distance('[1,2]', '[0,0]');
|
||||
SELECT cosine_distance('[1,1]', '[1,1]');
|
||||
SELECT cosine_distance('[1,0]', '[0,2]');
|
||||
SELECT cosine_distance('[1,1]', '[-1,-1]');
|
||||
SELECT cosine_distance('[1,2]', '[3]');
|
||||
SELECT cosine_distance('[1,1]', '[1.1,1.1]');
|
||||
|
||||
@@ -19,8 +19,6 @@ sub test_index_replay
|
||||
|
||||
# Wait for replica to catch up
|
||||
my $applname = $node_replica->name;
|
||||
|
||||
my $server_version_num = $node_primary->safe_psql("postgres", "SHOW server_version_num");
|
||||
my $caughtup_query = "SELECT pg_current_wal_lsn() <= replay_lsn FROM pg_stat_replication WHERE application_name = '$applname';";
|
||||
$node_primary->poll_query_until('postgres', $caughtup_query)
|
||||
or die "Timed out while waiting for replica 1 to catch up";
|
||||
|
||||
@@ -94,7 +94,7 @@ for my $i (0 .. $#operators)
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO fix test
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
@@ -115,7 +115,7 @@ for my $i (0 .. $#operators)
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO fix test
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
@@ -19,8 +19,6 @@ sub test_index_replay
|
||||
|
||||
# Wait for replica to catch up
|
||||
my $applname = $node_replica->name;
|
||||
|
||||
my $server_version_num = $node_primary->safe_psql("postgres", "SHOW server_version_num");
|
||||
my $caughtup_query = "SELECT pg_current_wal_lsn() <= replay_lsn FROM pg_stat_replication WHERE application_name = '$applname';";
|
||||
$node_primary->poll_query_until('postgres', $caughtup_query)
|
||||
or die "Timed out while waiting for replica 1 to catch up";
|
||||
|
||||
@@ -89,7 +89,7 @@ foreach (@queries)
|
||||
test_recall(0.20, $limit, "before vacuum");
|
||||
test_recall(0.95, 100, "before vacuum");
|
||||
|
||||
# TODO test concurrent inserts with vacuum
|
||||
# TODO Test concurrent inserts with vacuum
|
||||
$node->safe_psql("postgres", "VACUUM tst;");
|
||||
|
||||
test_recall(0.95, $limit, "after vacuum");
|
||||
|
||||
117
test/t/017_ivfflat_insert_recall.pl
Normal file
117
test/t/017_ivfflat_insert_recall.pl
Normal file
@@ -0,0 +1,117 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $node;
|
||||
my @queries = ();
|
||||
my @expected;
|
||||
my $limit = 20;
|
||||
|
||||
sub test_recall
|
||||
{
|
||||
my ($probes, $min, $operator) = @_;
|
||||
my $correct = 0;
|
||||
my $total = 0;
|
||||
|
||||
my $explain = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = $probes;
|
||||
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||
));
|
||||
like($explain, qr/Index Scan using idx on tst/);
|
||||
|
||||
for my $i (0 .. $#queries)
|
||||
{
|
||||
my $actual = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = $probes;
|
||||
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||
));
|
||||
my @actual_ids = split("\n", $actual);
|
||||
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||
|
||||
my @expected_ids = split("\n", $expected[$i]);
|
||||
|
||||
foreach (@expected_ids)
|
||||
{
|
||||
if (exists($actual_set{$_}))
|
||||
{
|
||||
$correct++;
|
||||
}
|
||||
$total++;
|
||||
}
|
||||
}
|
||||
|
||||
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||
}
|
||||
|
||||
# Initialize node
|
||||
$node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i serial, v vector(3));");
|
||||
|
||||
# Generate queries
|
||||
for (1 .. 20)
|
||||
{
|
||||
my $r1 = rand();
|
||||
my $r2 = rand();
|
||||
my $r3 = rand();
|
||||
push(@queries, "[$r1,$r2,$r3]");
|
||||
}
|
||||
|
||||
# Check each index type
|
||||
my @operators = ("<->", "<#>", "<=>");
|
||||
my @opclasses = ("vector_l2_ops", "vector_ip_ops", "vector_cosine_ops");
|
||||
|
||||
for my $i (0 .. $#operators)
|
||||
{
|
||||
my $operator = $operators[$i];
|
||||
my $opclass = $opclasses[$i];
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX idx ON tst USING ivfflat (v $opclass);");
|
||||
|
||||
# Use concurrent inserts
|
||||
$node->pgbench(
|
||||
"--no-vacuum --client=10 --transactions=1000",
|
||||
0,
|
||||
[qr{actually processed}],
|
||||
[qr{^$}],
|
||||
"concurrent INSERTs",
|
||||
{
|
||||
"017_ivfflat_insert_recall_$opclass" => "INSERT INTO tst (v) SELECT ARRAY[random(), random(), random()] FROM generate_series(1, 10) i;"
|
||||
}
|
||||
);
|
||||
|
||||
# Get exact results
|
||||
@expected = ();
|
||||
foreach (@queries)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", qq(
|
||||
SET enable_indexscan = off;
|
||||
SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;
|
||||
));
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
# Account for equal distances
|
||||
test_recall(100, 0.9925, $operator);
|
||||
|
||||
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||
$node->safe_psql("postgres", "TRUNCATE tst;");
|
||||
}
|
||||
|
||||
done_testing();
|
||||
43
test/t/018_ivfflat_deletes.pl
Normal file
43
test/t/018_ivfflat_deletes.pl
Normal file
@@ -0,0 +1,43 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $dim = 3;
|
||||
|
||||
my $array_sql = join(",", ('random()') x $dim);
|
||||
|
||||
# Initialize node
|
||||
my $node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table and index
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i serial, v vector($dim));");
|
||||
$node->safe_psql("postgres",
|
||||
"INSERT INTO tst (v) SELECT ARRAY[$array_sql] FROM generate_series(1, 10000) i;"
|
||||
);
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING ivfflat (v vector_l2_ops);");
|
||||
|
||||
# Delete data
|
||||
$node->safe_psql("postgres", "DELETE FROM tst WHERE i % 100 != 0;");
|
||||
|
||||
my $exp = $node->safe_psql("postgres", qq(
|
||||
SET enable_indexscan = off;
|
||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
||||
));
|
||||
|
||||
# Run twice to make sure correct tuples marked as dead
|
||||
for (1 .. 2)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = 100;
|
||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
||||
));
|
||||
is($res, $exp);
|
||||
}
|
||||
|
||||
done_testing();
|
||||
93
test/t/019_hnsw_array.pl
Normal file
93
test/t/019_hnsw_array.pl
Normal file
@@ -0,0 +1,93 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $node;
|
||||
my @queries = ();
|
||||
my @expected;
|
||||
my $limit = 20;
|
||||
|
||||
sub test_recall
|
||||
{
|
||||
my ($min, $operator) = @_;
|
||||
my $correct = 0;
|
||||
my $total = 0;
|
||||
|
||||
my $explain = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||
));
|
||||
like($explain, qr/Index Scan/);
|
||||
|
||||
for my $i (0 .. $#queries)
|
||||
{
|
||||
my $actual = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||
));
|
||||
my @actual_ids = split("\n", $actual);
|
||||
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||
|
||||
my @expected_ids = split("\n", $expected[$i]);
|
||||
|
||||
foreach (@expected_ids)
|
||||
{
|
||||
if (exists($actual_set{$_}))
|
||||
{
|
||||
$correct++;
|
||||
}
|
||||
$total++;
|
||||
}
|
||||
}
|
||||
|
||||
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||
}
|
||||
|
||||
# Initialize node
|
||||
$node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
|
||||
$node->safe_psql("postgres",
|
||||
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
|
||||
);
|
||||
|
||||
# Generate queries
|
||||
for (1 .. 20)
|
||||
{
|
||||
my $r1 = rand();
|
||||
my $r2 = rand();
|
||||
my $r3 = rand();
|
||||
push(@queries, "{$r1,$r2,$r3}");
|
||||
}
|
||||
|
||||
# Check each index type
|
||||
my @operators = ("<->");
|
||||
my @opclasses = ("float4_l2_ops");
|
||||
|
||||
for my $i (0 .. $#operators)
|
||||
{
|
||||
my $operator = $operators[$i];
|
||||
my $opclass = $opclasses[$i];
|
||||
|
||||
# Get exact results
|
||||
@expected = ();
|
||||
foreach (@queries)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass) WITH (dimensions = 3);");
|
||||
|
||||
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||
test_recall($min, $operator);
|
||||
}
|
||||
|
||||
done_testing();
|
||||
@@ -1,4 +1,4 @@
|
||||
comment = 'vector data type and ivfflat access method'
|
||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||
default_version = '0.5.0'
|
||||
module_pathname = '$libdir/vector'
|
||||
relocatable = true
|
||||
|
||||
Reference in New Issue
Block a user