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5 Commits
samples-li
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hnsw-index
| Author | SHA1 | Date | |
|---|---|---|---|
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915a630d00 | ||
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20c24e2d18 | ||
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466ec1ac46 | ||
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ff2bdfb3b4 | ||
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0a3669a680 |
@@ -1,8 +1,3 @@
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|||||||
## 0.5.1 (2023-10-10)
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||||||
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- Improved performance of HNSW index builds
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- Added check for MVCC-compliant snapshot for index scans
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## 0.5.0 (2023-08-28)
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## 0.5.0 (2023-08-28)
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- Added HNSW index type
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- Added HNSW index type
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@@ -2,7 +2,7 @@
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"name": "vector",
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"name": "vector",
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"abstract": "Open-source vector similarity search for Postgres",
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"abstract": "Open-source vector similarity search for Postgres",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"version": "0.5.1",
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"version": "0.5.0",
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"maintainer": [
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"maintainer": [
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"Andrew Kane <andrew@ankane.org>"
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"Andrew Kane <andrew@ankane.org>"
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],
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],
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@@ -20,7 +20,7 @@
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"vector": {
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"vector": {
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"file": "sql/vector.sql",
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"file": "sql/vector.sql",
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"docfile": "README.md",
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"docfile": "README.md",
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"version": "0.5.1",
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"version": "0.5.0",
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"abstract": "Open-source vector similarity search for Postgres"
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"abstract": "Open-source vector similarity search for Postgres"
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}
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}
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},
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},
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4
Makefile
4
Makefile
@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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MODULE_big = vector
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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DATA = $(wildcard sql/*--*.sql)
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@@ -8,7 +8,7 @@ HEADERS = src/vector.h
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TESTS = $(wildcard test/sql/*.sql)
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TESTS = $(wildcard test/sql/*.sql)
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REGRESS = $(patsubst test/sql/%.sql,%,$(TESTS))
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REGRESS = $(patsubst test/sql/%.sql,%,$(TESTS))
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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OPTFLAGS = -march=native
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OPTFLAGS = -march=native
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@@ -1,11 +1,11 @@
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EXTENSION = vector
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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HEADERS = src\vector.h
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|
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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|
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# For /arch flags
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# For /arch flags
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# https://learn.microsoft.com/en-us/cpp/build/reference/arch-minimum-cpu-architecture
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# https://learn.microsoft.com/en-us/cpp/build/reference/arch-minimum-cpu-architecture
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14
README.md
14
README.md
@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
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|
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```sh
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```sh
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cd /tmp
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cd /tmp
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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make
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make
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make install # may need sudo
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make install # may need sudo
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@@ -509,7 +509,7 @@ Then use `nmake` to build:
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|
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```cmd
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```cmd
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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nmake /F Makefile.win
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nmake /F Makefile.win
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nmake /F Makefile.win install
|
nmake /F Makefile.win install
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@@ -530,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
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You can also build the image manually:
|
You can also build the image manually:
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|
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```sh
|
```sh
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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||||||
docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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```
|
```
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||||||
@@ -595,18 +595,12 @@ pgvector is available on [these providers](https://github.com/pgvector/pgvector/
|
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|
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## Upgrading
|
## Upgrading
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|
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Install the latest version. Then in each database you want to upgrade, run:
|
Install the latest version and run:
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```sql
|
```sql
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ALTER EXTENSION vector UPDATE;
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ALTER EXTENSION vector UPDATE;
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```
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```
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You can check the version in the current database with:
|
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|
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```sql
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SELECT extversion FROM pg_extension WHERE extname = 'vector';
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||||||
```
|
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||||||
|
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||||||
## Upgrade Notes
|
## Upgrade Notes
|
||||||
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|
||||||
### 0.4.0
|
### 0.4.0
|
||||||
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|||||||
@@ -1,2 +0,0 @@
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|||||||
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
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|
||||||
\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit
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|
||||||
13
src/hnsw.c
13
src/hnsw.c
@@ -91,7 +91,7 @@ hnswcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
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|||||||
MemSet(&costs, 0, sizeof(costs));
|
MemSet(&costs, 0, sizeof(costs));
|
||||||
|
|
||||||
index = index_open(path->indexinfo->indexoid, NoLock);
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index = index_open(path->indexinfo->indexoid, NoLock);
|
||||||
HnswGetMetaPageInfo(index, &m, NULL);
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m = HnswGetM(index);
|
||||||
index_close(index, NoLock);
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index_close(index, NoLock);
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||||||
|
|
||||||
/* Approximate entry level */
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/* Approximate entry level */
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||||||
@@ -155,6 +155,15 @@ hnswvalidate(Oid opclassoid)
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|||||||
return true;
|
return true;
|
||||||
}
|
}
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||||||
|
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||||||
|
/*
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||||||
|
* Checks if index-only scan is supported
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||||||
|
*/
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static bool
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hnswcanreturn(Relation indexRelation, int attno)
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||||||
|
{
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return attno == 1 && !OidIsValid(index_getprocid(indexRelation, 1, HNSW_NORM_PROC));
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||||||
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}
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||||||
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|
||||||
/*
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/*
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||||||
* Define index handler
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* Define index handler
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||||||
*
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*
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||||||
@@ -196,7 +205,7 @@ hnswhandler(PG_FUNCTION_ARGS)
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|||||||
amroutine->aminsert = hnswinsert;
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amroutine->aminsert = hnswinsert;
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||||||
amroutine->ambulkdelete = hnswbulkdelete;
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amroutine->ambulkdelete = hnswbulkdelete;
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||||||
amroutine->amvacuumcleanup = hnswvacuumcleanup;
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amroutine->amvacuumcleanup = hnswvacuumcleanup;
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amroutine->amcanreturn = NULL;
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amroutine->amcanreturn = hnswcanreturn;
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amroutine->amcostestimate = hnswcostestimate;
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amroutine->amcostestimate = hnswcostestimate;
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amroutine->amoptions = hnswoptions;
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amroutine->amoptions = hnswoptions;
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||||||
amroutine->amproperty = NULL; /* TODO AMPROP_DISTANCE_ORDERABLE */
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amroutine->amproperty = NULL; /* TODO AMPROP_DISTANCE_ORDERABLE */
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||||||
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|||||||
12
src/hnsw.h
12
src/hnsw.h
@@ -57,8 +57,6 @@
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|||||||
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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||||||
#define PROGRESS_HNSW_PHASE_LOAD 2
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#define PROGRESS_HNSW_PHASE_LOAD 2
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||||||
|
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||||||
#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
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|
||||||
|
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||||||
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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||||||
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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||||||
|
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||||||
@@ -112,13 +110,11 @@ typedef struct HnswCandidate
|
|||||||
{
|
{
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||||||
HnswElement element;
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HnswElement element;
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||||||
float distance;
|
float distance;
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||||||
bool closer;
|
|
||||||
} HnswCandidate;
|
} HnswCandidate;
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||||||
|
|
||||||
typedef struct HnswNeighborArray
|
typedef struct HnswNeighborArray
|
||||||
{
|
{
|
||||||
int length;
|
int length;
|
||||||
bool closerSet;
|
|
||||||
HnswCandidate *items;
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HnswCandidate *items;
|
||||||
} HnswNeighborArray;
|
} HnswNeighborArray;
|
||||||
|
|
||||||
@@ -222,6 +218,7 @@ typedef HnswNeighborTupleData * HnswNeighborTuple;
|
|||||||
typedef struct HnswScanOpaqueData
|
typedef struct HnswScanOpaqueData
|
||||||
{
|
{
|
||||||
bool first;
|
bool first;
|
||||||
|
Buffer buf;
|
||||||
List *w;
|
List *w;
|
||||||
MemoryContext tmpCtx;
|
MemoryContext tmpCtx;
|
||||||
|
|
||||||
@@ -262,16 +259,15 @@ typedef struct HnswVacuumState
|
|||||||
/* Methods */
|
/* Methods */
|
||||||
int HnswGetM(Relation index);
|
int HnswGetM(Relation index);
|
||||||
int HnswGetEfConstruction(Relation index);
|
int HnswGetEfConstruction(Relation index);
|
||||||
FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
|
FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum);
|
||||||
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||||
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
||||||
void HnswInitPage(Buffer buf, Page page);
|
void HnswInitPage(Buffer buf, Page page);
|
||||||
void HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state);
|
void HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state);
|
||||||
void HnswInit(void);
|
void HnswInit(void);
|
||||||
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
|
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec, HnswElement skipElement);
|
||||||
HnswElement HnswGetEntryPoint(Relation index);
|
HnswElement HnswGetEntryPoint(Relation index);
|
||||||
void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
|
|
||||||
HnswElement HnswInitElement(ItemPointer tid, int m, double ml, int maxLevel);
|
HnswElement HnswInitElement(ItemPointer tid, int m, double ml, int maxLevel);
|
||||||
void HnswFreeElement(HnswElement element);
|
void HnswFreeElement(HnswElement element);
|
||||||
HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
|
HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
|
||||||
@@ -288,7 +284,7 @@ void HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool
|
|||||||
void HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
|
void HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
|
||||||
void HnswSetElementTuple(HnswElementTuple etup, HnswElement element);
|
void HnswSetElementTuple(HnswElementTuple etup, HnswElement element);
|
||||||
void HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
|
void HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
|
||||||
void HnswLoadNeighbors(HnswElement element, Relation index, int m);
|
void HnswLoadNeighbors(HnswElement element, Relation index);
|
||||||
|
|
||||||
/* Index access methods */
|
/* Index access methods */
|
||||||
IndexBuildResult *hnswbuild(Relation heap, Relation index, IndexInfo *indexInfo);
|
IndexBuildResult *hnswbuild(Relation heap, Relation index, IndexInfo *indexInfo);
|
||||||
|
|||||||
@@ -81,6 +81,7 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
|
|||||||
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(*buf);
|
||||||
GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
|
||||||
UnlockReleaseBuffer(*buf);
|
UnlockReleaseBuffer(*buf);
|
||||||
|
|
||||||
@@ -117,12 +118,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
ListCell *lc;
|
ListCell *lc;
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
maxSize = HNSW_MAX_SIZE;
|
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||||
|
|
||||||
/* Allocate once */
|
/* Allocate once */
|
||||||
etup = palloc0(etupSize);
|
etup = palloc0(etupSize);
|
||||||
ntup = palloc0(BLCKSZ);
|
ntup = palloc0(maxSize);
|
||||||
|
|
||||||
/* Prepare first page */
|
/* Prepare first page */
|
||||||
buf = HnswNewBuffer(index, forkNum);
|
buf = HnswNewBuffer(index, forkNum);
|
||||||
@@ -178,6 +179,7 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
insertPage = BufferGetBlockNumber(buf);
|
insertPage = BufferGetBlockNumber(buf);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -225,6 +227,7 @@ CreateNeighborPages(HnswBuildState * buildstate)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
|
|||||||
@@ -135,7 +135,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||||
maxSize = HNSW_MAX_SIZE;
|
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||||
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
||||||
|
|
||||||
/* Prepare element tuple */
|
/* Prepare element tuple */
|
||||||
@@ -202,6 +202,8 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(newbuf);
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
@@ -268,6 +270,9 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
|
if (nbuf != buf)
|
||||||
|
MarkBufferDirty(nbuf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
@@ -324,7 +329,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
|||||||
|
|
||||||
/* Get latest neighbors since they may have changed */
|
/* Get latest neighbors since they may have changed */
|
||||||
/* Do not lock yet since selecting neighbors can take time */
|
/* Do not lock yet since selecting neighbors can take time */
|
||||||
HnswLoadNeighbors(hc->element, index, m);
|
HnswLoadNeighbors(hc->element, index);
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Could improve performance for vacuuming by checking neighbors
|
* Could improve performance for vacuuming by checking neighbors
|
||||||
@@ -386,6 +391,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
@@ -439,6 +445,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -485,8 +492,9 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
|||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
HnswElement entryPoint;
|
HnswElement entryPoint;
|
||||||
HnswElement element;
|
HnswElement element;
|
||||||
int m;
|
int m = HnswGetM(index);
|
||||||
int efConstruction = HnswGetEfConstruction(index);
|
int efConstruction = HnswGetEfConstruction(index);
|
||||||
|
double ml = HnswGetMl(m);
|
||||||
FmgrInfo *procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
FmgrInfo *procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||||
Oid collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
HnswElement dup;
|
HnswElement dup;
|
||||||
@@ -503,6 +511,10 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
|||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/* Create an element */
|
||||||
|
element = HnswInitElement(heap_tid, m, ml, HnswGetMaxLevel(m));
|
||||||
|
element->vec = DatumGetVector(value);
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Get a shared lock. This allows vacuum to ensure no in-flight inserts
|
* Get a shared lock. This allows vacuum to ensure no in-flight inserts
|
||||||
* before repairing graph. Use a page lock so it does not interfere with
|
* before repairing graph. Use a page lock so it does not interfere with
|
||||||
@@ -510,12 +522,8 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
|||||||
*/
|
*/
|
||||||
LockPage(index, HNSW_UPDATE_LOCK, lockmode);
|
LockPage(index, HNSW_UPDATE_LOCK, lockmode);
|
||||||
|
|
||||||
/* Get m and entry point */
|
/* Get entry point */
|
||||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
entryPoint = HnswGetEntryPoint(index);
|
||||||
|
|
||||||
/* Create an element */
|
|
||||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
|
||||||
element->vec = DatumGetVector(value);
|
|
||||||
|
|
||||||
/* Prevent concurrent inserts when likely updating entry point */
|
/* Prevent concurrent inserts when likely updating entry point */
|
||||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||||
|
|||||||
@@ -17,26 +17,23 @@ GetScanItems(IndexScanDesc scan, Datum q)
|
|||||||
Relation index = scan->indexRelation;
|
Relation index = scan->indexRelation;
|
||||||
FmgrInfo *procinfo = so->procinfo;
|
FmgrInfo *procinfo = so->procinfo;
|
||||||
Oid collation = so->collation;
|
Oid collation = so->collation;
|
||||||
|
bool loadVec = scan->xs_want_itup;
|
||||||
List *ep;
|
List *ep;
|
||||||
List *w;
|
List *w;
|
||||||
int m;
|
HnswElement entryPoint = HnswGetEntryPoint(index);
|
||||||
HnswElement entryPoint;
|
|
||||||
|
|
||||||
/* Get m and entry point */
|
|
||||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
|
||||||
|
|
||||||
if (entryPoint == NULL)
|
if (entryPoint == NULL)
|
||||||
return NIL;
|
return NIL;
|
||||||
|
|
||||||
ep = list_make1(HnswEntryCandidate(entryPoint, q, index, procinfo, collation, false));
|
ep = list_make1(HnswEntryCandidate(entryPoint, q, index, procinfo, collation, loadVec));
|
||||||
|
|
||||||
for (int lc = entryPoint->level; lc >= 1; lc--)
|
for (int lc = entryPoint->level; lc >= 1; lc--)
|
||||||
{
|
{
|
||||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
|
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, loadVec, NULL);
|
||||||
ep = w;
|
ep = w;
|
||||||
}
|
}
|
||||||
|
|
||||||
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
|
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, loadVec, NULL);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -62,33 +59,6 @@ GetDimensions(Relation index)
|
|||||||
return dimensions;
|
return dimensions;
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Get scan value
|
|
||||||
*/
|
|
||||||
static Datum
|
|
||||||
GetScanValue(IndexScanDesc scan)
|
|
||||||
{
|
|
||||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
|
||||||
Datum value;
|
|
||||||
|
|
||||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
|
||||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
|
||||||
else
|
|
||||||
{
|
|
||||||
value = scan->orderByData->sk_argument;
|
|
||||||
|
|
||||||
/* Value should not be compressed or toasted */
|
|
||||||
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
|
||||||
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
|
||||||
|
|
||||||
/* Fine if normalization fails */
|
|
||||||
if (so->normprocinfo != NULL)
|
|
||||||
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
|
||||||
}
|
|
||||||
|
|
||||||
return value;
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Prepare for an index scan
|
* Prepare for an index scan
|
||||||
*/
|
*/
|
||||||
@@ -101,6 +71,7 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||||
|
|
||||||
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
||||||
|
so->buf = InvalidBuffer;
|
||||||
so->first = true;
|
so->first = true;
|
||||||
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
||||||
"Hnsw scan temporary context",
|
"Hnsw scan temporary context",
|
||||||
@@ -113,6 +84,9 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
|
|
||||||
scan->opaque = so;
|
scan->opaque = so;
|
||||||
|
|
||||||
|
/* OK to always set since cheap */
|
||||||
|
scan->xs_itupdesc = RelationGetDescr(index);
|
||||||
|
|
||||||
return scan;
|
return scan;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -160,13 +134,20 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan hnsw index without order");
|
elog(ERROR, "cannot scan hnsw index without order");
|
||||||
|
|
||||||
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
|
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
else
|
||||||
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
|
{
|
||||||
|
value = scan->orderByData->sk_argument;
|
||||||
|
|
||||||
/* Get scan value */
|
/* Value should not be compressed or toasted */
|
||||||
value = GetScanValue(scan);
|
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
||||||
|
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
||||||
|
|
||||||
|
/* Fine if normalization fails */
|
||||||
|
if (so->normprocinfo != NULL)
|
||||||
|
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||||
@@ -185,7 +166,8 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
while (list_length(so->w) > 0)
|
while (list_length(so->w) > 0)
|
||||||
{
|
{
|
||||||
HnswCandidate *hc = llast(so->w);
|
HnswCandidate *hc = llast(so->w);
|
||||||
ItemPointer heaptid;
|
ItemPointer tid;
|
||||||
|
BlockNumber indexblkno;
|
||||||
|
|
||||||
/* Move to next element if no valid heap TIDs */
|
/* Move to next element if no valid heap TIDs */
|
||||||
if (list_length(hc->element->heaptids) == 0)
|
if (list_length(hc->element->heaptids) == 0)
|
||||||
@@ -194,18 +176,40 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
continue;
|
continue;
|
||||||
}
|
}
|
||||||
|
|
||||||
heaptid = llast(hc->element->heaptids);
|
tid = llast(hc->element->heaptids);
|
||||||
|
indexblkno = hc->element->blkno;
|
||||||
|
|
||||||
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
||||||
|
|
||||||
|
if (scan->xs_want_itup)
|
||||||
|
{
|
||||||
|
Datum value = PointerGetDatum(hc->element->vec);
|
||||||
|
bool isnull = false;
|
||||||
|
|
||||||
|
scan->xs_itup = index_form_tuple(scan->xs_itupdesc, &value, &isnull);
|
||||||
|
scan->xs_itup->t_tid = *tid;
|
||||||
|
}
|
||||||
|
|
||||||
MemoryContextSwitchTo(oldCtx);
|
MemoryContextSwitchTo(oldCtx);
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 120000
|
#if PG_VERSION_NUM >= 120000
|
||||||
scan->xs_heaptid = *heaptid;
|
scan->xs_heaptid = *tid;
|
||||||
#else
|
#else
|
||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *tid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
/* Unpin buffer */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
|
/*
|
||||||
|
* An index scan must maintain a pin on the index page holding the
|
||||||
|
* item last returned by amgettuple
|
||||||
|
*
|
||||||
|
* https://www.postgresql.org/docs/current/index-locking.html
|
||||||
|
*/
|
||||||
|
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
@@ -222,6 +226,10 @@ hnswendscan(IndexScanDesc scan)
|
|||||||
{
|
{
|
||||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||||
|
|
||||||
|
/* Release pin */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
MemoryContextDelete(so->tmpCtx);
|
MemoryContextDelete(so->tmpCtx);
|
||||||
|
|
||||||
pfree(so);
|
pfree(so);
|
||||||
|
|||||||
184
src/hnswutils.c
184
src/hnswutils.c
@@ -38,12 +38,12 @@ HnswGetEfConstruction(Relation index)
|
|||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
HnswOptionalProcInfo(Relation index, uint16 procnum)
|
HnswOptionalProcInfo(Relation rel, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(index, 1, procnum);
|
return index_getprocinfo(rel, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -117,6 +117,7 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
|||||||
void
|
void
|
||||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -139,21 +140,9 @@ HnswInitNeighbors(HnswElement element, int m)
|
|||||||
a = &element->neighbors[lc];
|
a = &element->neighbors[lc];
|
||||||
a->length = 0;
|
a->length = 0;
|
||||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||||
a->closerSet = false;
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Free neighbors
|
|
||||||
*/
|
|
||||||
static void
|
|
||||||
HnswFreeNeighbors(HnswElement element)
|
|
||||||
{
|
|
||||||
for (int lc = 0; lc <= element->level; lc++)
|
|
||||||
pfree(element->neighbors[lc].items);
|
|
||||||
pfree(element->neighbors);
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Allocate an element
|
* Allocate an element
|
||||||
*/
|
*/
|
||||||
@@ -185,8 +174,10 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
|
|||||||
void
|
void
|
||||||
HnswFreeElement(HnswElement element)
|
HnswFreeElement(HnswElement element)
|
||||||
{
|
{
|
||||||
HnswFreeNeighbors(element);
|
|
||||||
list_free_deep(element->heaptids);
|
list_free_deep(element->heaptids);
|
||||||
|
for (int lc = 0; lc <= element->level; lc++)
|
||||||
|
pfree(element->neighbors[lc].items);
|
||||||
|
pfree(element->neighbors);
|
||||||
pfree(element->vec);
|
pfree(element->vec);
|
||||||
pfree(element);
|
pfree(element);
|
||||||
}
|
}
|
||||||
@@ -219,43 +210,25 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
|||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Get the metapage info
|
* Get the entry point
|
||||||
*/
|
*/
|
||||||
void
|
HnswElement
|
||||||
HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint)
|
HnswGetEntryPoint(Relation index)
|
||||||
{
|
{
|
||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
HnswMetaPage metap;
|
HnswMetaPage metap;
|
||||||
|
HnswElement entryPoint = NULL;
|
||||||
|
|
||||||
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
||||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||||
page = BufferGetPage(buf);
|
page = BufferGetPage(buf);
|
||||||
metap = HnswPageGetMeta(page);
|
metap = HnswPageGetMeta(page);
|
||||||
|
|
||||||
if (m != NULL)
|
if (BlockNumberIsValid(metap->entryBlkno))
|
||||||
*m = metap->m;
|
entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
||||||
|
|
||||||
if (entryPoint != NULL)
|
|
||||||
{
|
|
||||||
if (BlockNumberIsValid(metap->entryBlkno))
|
|
||||||
*entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
|
||||||
else
|
|
||||||
*entryPoint = NULL;
|
|
||||||
}
|
|
||||||
|
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
|
||||||
* Get the entry point
|
|
||||||
*/
|
|
||||||
HnswElement
|
|
||||||
HnswGetEntryPoint(Relation index)
|
|
||||||
{
|
|
||||||
HnswElement entryPoint;
|
|
||||||
|
|
||||||
HnswGetMetaPageInfo(index, NULL, &entryPoint);
|
|
||||||
|
|
||||||
return entryPoint;
|
return entryPoint;
|
||||||
}
|
}
|
||||||
@@ -364,9 +337,10 @@ HnswSetNeighborTuple(HnswNeighborTuple ntup, HnswElement e, int m)
|
|||||||
* Load neighbors from page
|
* Load neighbors from page
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
LoadNeighborsFromPage(HnswElement element, Relation index, Page page, int m)
|
LoadNeighborsFromPage(HnswElement element, Relation index, Page page)
|
||||||
{
|
{
|
||||||
HnswNeighborTuple ntup = (HnswNeighborTuple) PageGetItem(page, PageGetItemId(page, element->neighborOffno));
|
HnswNeighborTuple ntup = (HnswNeighborTuple) PageGetItem(page, PageGetItemId(page, element->neighborOffno));
|
||||||
|
int m = HnswGetM(index);
|
||||||
int neighborCount = (element->level + 2) * m;
|
int neighborCount = (element->level + 2) * m;
|
||||||
|
|
||||||
Assert(HnswIsNeighborTuple(ntup));
|
Assert(HnswIsNeighborTuple(ntup));
|
||||||
@@ -407,7 +381,7 @@ LoadNeighborsFromPage(HnswElement element, Relation index, Page page, int m)
|
|||||||
* Load neighbors
|
* Load neighbors
|
||||||
*/
|
*/
|
||||||
void
|
void
|
||||||
HnswLoadNeighbors(HnswElement element, Relation index, int m)
|
HnswLoadNeighbors(HnswElement element, Relation index)
|
||||||
{
|
{
|
||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
@@ -416,7 +390,7 @@ HnswLoadNeighbors(HnswElement element, Relation index, int m)
|
|||||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||||
page = BufferGetPage(buf);
|
page = BufferGetPage(buf);
|
||||||
|
|
||||||
LoadNeighborsFromPage(element, index, page, m);
|
LoadNeighborsFromPage(element, index, page);
|
||||||
|
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -569,7 +543,7 @@ AddToVisited(HTAB *v, HnswCandidate * hc, Relation index, bool *found)
|
|||||||
* Algorithm 2 from paper
|
* Algorithm 2 from paper
|
||||||
*/
|
*/
|
||||||
List *
|
List *
|
||||||
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
|
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec, HnswElement skipElement)
|
||||||
{
|
{
|
||||||
ListCell *lc2;
|
ListCell *lc2;
|
||||||
|
|
||||||
@@ -624,7 +598,7 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
|||||||
break;
|
break;
|
||||||
|
|
||||||
if (c->element->neighbors == NULL)
|
if (c->element->neighbors == NULL)
|
||||||
HnswLoadNeighbors(c->element, index, m);
|
HnswLoadNeighbors(c->element, index);
|
||||||
|
|
||||||
/* Get the neighborhood at layer lc */
|
/* Get the neighborhood at layer lc */
|
||||||
neighborhood = &c->element->neighbors[lc];
|
neighborhood = &c->element->neighbors[lc];
|
||||||
@@ -645,7 +619,7 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
|||||||
if (index == NULL)
|
if (index == NULL)
|
||||||
eDistance = GetCandidateDistance(e, q, procinfo, collation);
|
eDistance = GetCandidateDistance(e, q, procinfo, collation);
|
||||||
else
|
else
|
||||||
HnswLoadElement(e->element, &eDistance, &q, index, procinfo, collation, inserting);
|
HnswLoadElement(e->element, &eDistance, &q, index, procinfo, collation, loadVec);
|
||||||
|
|
||||||
Assert(!e->element->deleted);
|
Assert(!e->element->deleted);
|
||||||
|
|
||||||
@@ -693,34 +667,6 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
|||||||
return w;
|
return w;
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Compare candidate distances
|
|
||||||
*/
|
|
||||||
static int
|
|
||||||
#if PG_VERSION_NUM >= 130000
|
|
||||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
|
||||||
#else
|
|
||||||
CompareCandidateDistances(const void *a, const void *b)
|
|
||||||
#endif
|
|
||||||
{
|
|
||||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
|
||||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
|
||||||
|
|
||||||
if (hca->distance < hcb->distance)
|
|
||||||
return 1;
|
|
||||||
|
|
||||||
if (hca->distance > hcb->distance)
|
|
||||||
return -1;
|
|
||||||
|
|
||||||
if (hca->element < hcb->element)
|
|
||||||
return 1;
|
|
||||||
|
|
||||||
if (hca->element > hcb->element)
|
|
||||||
return -1;
|
|
||||||
|
|
||||||
return 0;
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Calculate the distance between elements
|
* Calculate the distance between elements
|
||||||
*/
|
*/
|
||||||
@@ -777,77 +723,33 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
|||||||
* Algorithm 4 from paper
|
* Algorithm 4 from paper
|
||||||
*/
|
*/
|
||||||
static List *
|
static List *
|
||||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
|
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
||||||
{
|
{
|
||||||
List *r = NIL;
|
List *r = NIL;
|
||||||
List *w = list_copy(c);
|
List *w = list_copy(c);
|
||||||
pairingheap *wd;
|
pairingheap *wd;
|
||||||
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
|
||||||
List *added = NIL;
|
|
||||||
bool removedAny = false;
|
|
||||||
|
|
||||||
if (list_length(w) <= m)
|
if (list_length(w) <= m)
|
||||||
return w;
|
return w;
|
||||||
|
|
||||||
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
||||||
|
|
||||||
/* Ensure order of candidates is deterministic for closer caching */
|
|
||||||
if (sortCandidates)
|
|
||||||
list_sort(w, CompareCandidateDistances);
|
|
||||||
|
|
||||||
while (list_length(w) > 0 && list_length(r) < m)
|
while (list_length(w) > 0 && list_length(r) < m)
|
||||||
{
|
{
|
||||||
/* Assumes w is already ordered desc */
|
/* Assumes w is already ordered desc */
|
||||||
HnswCandidate *e = llast(w);
|
HnswCandidate *e = llast(w);
|
||||||
|
bool closer;
|
||||||
|
|
||||||
w = list_delete_last(w);
|
w = list_delete_last(w);
|
||||||
|
|
||||||
/* Use previous state of r and wd to skip work when possible */
|
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||||
if (mustCalculate)
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
else if (list_length(added) > 0)
|
|
||||||
{
|
|
||||||
/*
|
|
||||||
* If the current candidate was closer, we only need to compare it
|
|
||||||
* with the other candidates that we have added.
|
|
||||||
*/
|
|
||||||
if (e->closer)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
|
|
||||||
|
|
||||||
if (!e->closer)
|
if (closer)
|
||||||
removedAny = true;
|
|
||||||
}
|
|
||||||
else
|
|
||||||
{
|
|
||||||
/*
|
|
||||||
* If we have removed any candidates from closer, a candidate
|
|
||||||
* that was not closer earlier might now be.
|
|
||||||
*/
|
|
||||||
if (removedAny)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
if (e->closer)
|
|
||||||
added = lappend(added, e);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
else if (e == newCandidate)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
if (e->closer)
|
|
||||||
added = lappend(added, e);
|
|
||||||
}
|
|
||||||
|
|
||||||
if (e->closer)
|
|
||||||
r = lappend(r, e);
|
r = lappend(r, e);
|
||||||
else
|
else
|
||||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Cached value can only be used in future if sorted deterministically */
|
|
||||||
e2->neighbors[lc].closerSet = sortCandidates;
|
|
||||||
|
|
||||||
/* Keep pruned connections */
|
/* Keep pruned connections */
|
||||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||||
@@ -901,6 +803,28 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
|
|||||||
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Compare candidate distances
|
||||||
|
*/
|
||||||
|
static int
|
||||||
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||||
|
#else
|
||||||
|
CompareCandidateDistances(const void *a, const void *b)
|
||||||
|
#endif
|
||||||
|
{
|
||||||
|
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||||
|
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||||
|
|
||||||
|
if (hca->distance < hcb->distance)
|
||||||
|
return 1;
|
||||||
|
|
||||||
|
if (hca->distance > hcb->distance)
|
||||||
|
return -1;
|
||||||
|
|
||||||
|
return 0;
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Update connections
|
* Update connections
|
||||||
*/
|
*/
|
||||||
@@ -954,12 +878,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
|||||||
{
|
{
|
||||||
List *c = NIL;
|
List *c = NIL;
|
||||||
|
|
||||||
/* Add candidates */
|
/* Add and sort candidates */
|
||||||
for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
|
||||||
c = lappend(c, ¤tNeighbors->items[i]);
|
c = lappend(c, ¤tNeighbors->items[i]);
|
||||||
c = lappend(c, &hc2);
|
c = lappend(c, &hc2);
|
||||||
|
list_sort(c, CompareCandidateDistances);
|
||||||
|
|
||||||
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
|
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
||||||
|
|
||||||
/* Should not happen */
|
/* Should not happen */
|
||||||
if (pruned == NULL)
|
if (pruned == NULL)
|
||||||
@@ -1031,7 +956,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
/* 1st phase: greedy search to insert level */
|
/* 1st phase: greedy search to insert level */
|
||||||
for (int lc = entryLevel; lc >= level + 1; lc--)
|
for (int lc = entryLevel; lc >= level + 1; lc--)
|
||||||
{
|
{
|
||||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, true, skipElement);
|
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, true, skipElement);
|
||||||
ep = w;
|
ep = w;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -1049,7 +974,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
List *neighbors;
|
List *neighbors;
|
||||||
List *lw;
|
List *lw;
|
||||||
|
|
||||||
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, m, true, skipElement);
|
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, true, skipElement);
|
||||||
|
|
||||||
/* Elements being deleted or skipped can help with search */
|
/* Elements being deleted or skipped can help with search */
|
||||||
/* but should be removed before selecting neighbors */
|
/* but should be removed before selecting neighbors */
|
||||||
@@ -1058,12 +983,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
else
|
else
|
||||||
lw = w;
|
lw = w;
|
||||||
|
|
||||||
/*
|
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
||||||
* Candidates are sorted, but not deterministically. Could set
|
|
||||||
* sortCandidates to true for in-memory builds to enable closer
|
|
||||||
* caching, but there does not seem to be a difference in performance.
|
|
||||||
*/
|
|
||||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
|
|
||||||
|
|
||||||
AddConnections(element, neighbors, lm, lc);
|
AddConnections(element, neighbors, lm, lc);
|
||||||
|
|
||||||
|
|||||||
@@ -128,7 +128,10 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
|||||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||||
|
|
||||||
if (updated)
|
if (updated)
|
||||||
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
}
|
||||||
else
|
else
|
||||||
GenericXLogAbort(state);
|
GenericXLogAbort(state);
|
||||||
|
|
||||||
@@ -226,6 +229,7 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -326,10 +330,7 @@ RepairGraph(HnswVacuumState * vacuumstate)
|
|||||||
BufferAccessStrategy bas = vacuumstate->bas;
|
BufferAccessStrategy bas = vacuumstate->bas;
|
||||||
BlockNumber blkno = HNSW_HEAD_BLKNO;
|
BlockNumber blkno = HNSW_HEAD_BLKNO;
|
||||||
|
|
||||||
/*
|
/* Wait for inserts to complete */
|
||||||
* Wait for inserts to complete. Inserts before this point may have
|
|
||||||
* neighbors about to be deleted. Inserts after this point will not.
|
|
||||||
*/
|
|
||||||
LockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
LockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||||
UnlockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
UnlockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||||
|
|
||||||
@@ -442,11 +443,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
Relation index = vacuumstate->index;
|
Relation index = vacuumstate->index;
|
||||||
BufferAccessStrategy bas = vacuumstate->bas;
|
BufferAccessStrategy bas = vacuumstate->bas;
|
||||||
|
|
||||||
/*
|
/* Wait for selects to complete */
|
||||||
* Wait for index scans to complete. Scans before this point may contain
|
|
||||||
* tuples about to be deleted. Scans after this point will not, since the
|
|
||||||
* graph has been repaired.
|
|
||||||
*/
|
|
||||||
LockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
LockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||||
UnlockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
UnlockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||||
|
|
||||||
@@ -543,6 +540,9 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
|
if (nbuf != buf)
|
||||||
|
MarkBufferDirty(nbuf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
UnlockReleaseBuffer(nbuf);
|
UnlockReleaseBuffer(nbuf);
|
||||||
@@ -582,6 +582,7 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
|||||||
vacuumstate->stats = stats;
|
vacuumstate->stats = stats;
|
||||||
vacuumstate->callback = callback;
|
vacuumstate->callback = callback;
|
||||||
vacuumstate->callback_state = callback_state;
|
vacuumstate->callback_state = callback_state;
|
||||||
|
vacuumstate->m = HnswGetM(index);
|
||||||
vacuumstate->efConstruction = HnswGetEfConstruction(index);
|
vacuumstate->efConstruction = HnswGetEfConstruction(index);
|
||||||
vacuumstate->bas = GetAccessStrategy(BAS_BULKREAD);
|
vacuumstate->bas = GetAccessStrategy(BAS_BULKREAD);
|
||||||
vacuumstate->procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
vacuumstate->procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||||
@@ -591,9 +592,6 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
|||||||
"Hnsw vacuum temporary context",
|
"Hnsw vacuum temporary context",
|
||||||
ALLOCSET_DEFAULT_SIZES);
|
ALLOCSET_DEFAULT_SIZES);
|
||||||
|
|
||||||
/* Get m from metapage */
|
|
||||||
HnswGetMetaPageInfo(index, &vacuumstate->m, NULL);
|
|
||||||
|
|
||||||
/* Create hash table */
|
/* Create hash table */
|
||||||
hash_ctl.keysize = sizeof(ItemPointerData);
|
hash_ctl.keysize = sizeof(ItemPointerData);
|
||||||
hash_ctl.entrysize = sizeof(ItemPointerData);
|
hash_ctl.entrysize = sizeof(ItemPointerData);
|
||||||
|
|||||||
@@ -11,7 +11,6 @@
|
|||||||
#include "miscadmin.h"
|
#include "miscadmin.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
#include "tcop/tcopprot.h"
|
#include "tcop/tcopprot.h"
|
||||||
#include "utils/datum.h"
|
|
||||||
#include "utils/memutils.h"
|
#include "utils/memutils.h"
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 140000
|
#if PG_VERSION_NUM >= 140000
|
||||||
@@ -66,18 +65,11 @@
|
|||||||
static void
|
static void
|
||||||
AddSample(Datum *values, IvfflatBuildState * buildstate)
|
AddSample(Datum *values, IvfflatBuildState * buildstate)
|
||||||
{
|
{
|
||||||
MemoryContext oldCtx;
|
VectorArray samples = buildstate->samples;
|
||||||
Datum value;
|
int targsamples = samples->maxlen;
|
||||||
int targsamples = buildstate->targsamples;
|
|
||||||
|
|
||||||
/* Use memory context since detoast can allocate */
|
|
||||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
|
||||||
|
|
||||||
/* Detoast once for all calls */
|
/* Detoast once for all calls */
|
||||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Restore memory context */
|
|
||||||
MemoryContextSwitchTo(oldCtx);
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Normalize with KMEANS_NORM_PROC since spherical distance function
|
* Normalize with KMEANS_NORM_PROC since spherical distance function
|
||||||
@@ -89,23 +81,18 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
|||||||
return;
|
return;
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Copy datum */
|
if (samples->length < targsamples)
|
||||||
value = datumCopy(value, false, -1);
|
{
|
||||||
|
VectorArraySet(samples, samples->length, DatumGetVector(value));
|
||||||
/* Reset memory context */
|
samples->length++;
|
||||||
MemoryContextReset(buildstate->tmpCtx);
|
}
|
||||||
|
|
||||||
if (list_length(buildstate->samples) < targsamples)
|
|
||||||
buildstate->samples = lappend(buildstate->samples, DatumGetVector(value));
|
|
||||||
else
|
else
|
||||||
{
|
{
|
||||||
if (buildstate->rowstoskip < 0)
|
if (buildstate->rowstoskip < 0)
|
||||||
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, list_length(buildstate->samples), targsamples);
|
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, samples->length, targsamples);
|
||||||
|
|
||||||
if (buildstate->rowstoskip <= 0)
|
if (buildstate->rowstoskip <= 0)
|
||||||
{
|
{
|
||||||
ListCell *lc;
|
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 150000
|
#if PG_VERSION_NUM >= 150000
|
||||||
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
|
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
|
||||||
#else
|
#else
|
||||||
@@ -113,8 +100,7 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
|
|||||||
#endif
|
#endif
|
||||||
|
|
||||||
Assert(k >= 0 && k < targsamples);
|
Assert(k >= 0 && k < targsamples);
|
||||||
lc = list_nth_cell(buildstate->samples, k);
|
VectorArraySet(samples, k, DatumGetVector(value));
|
||||||
lfirst(lc) = DatumGetVector(value);
|
|
||||||
}
|
}
|
||||||
|
|
||||||
buildstate->rowstoskip -= 1;
|
buildstate->rowstoskip -= 1;
|
||||||
@@ -129,13 +115,21 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
bool *isnull, bool tupleIsAlive, void *state)
|
bool *isnull, bool tupleIsAlive, void *state)
|
||||||
{
|
{
|
||||||
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
|
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
|
||||||
|
MemoryContext oldCtx;
|
||||||
|
|
||||||
/* Skip nulls */
|
/* Skip nulls */
|
||||||
if (isnull[0])
|
if (isnull[0])
|
||||||
return;
|
return;
|
||||||
|
|
||||||
|
/* Use memory context since detoast can allocate */
|
||||||
|
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||||
|
|
||||||
/* Add sample */
|
/* Add sample */
|
||||||
AddSample(values, buildstate);
|
AddSample(values, state);
|
||||||
|
|
||||||
|
/* Reset memory context */
|
||||||
|
MemoryContextSwitchTo(oldCtx);
|
||||||
|
MemoryContextReset(buildstate->tmpCtx);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -144,7 +138,7 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
static void
|
static void
|
||||||
SampleRows(IvfflatBuildState * buildstate)
|
SampleRows(IvfflatBuildState * buildstate)
|
||||||
{
|
{
|
||||||
int targsamples = buildstate->targsamples;
|
int targsamples = buildstate->samples->maxlen;
|
||||||
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
|
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
|
||||||
|
|
||||||
buildstate->rowstoskip = -1;
|
buildstate->rowstoskip = -1;
|
||||||
@@ -455,13 +449,12 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
|||||||
|
|
||||||
/* Sample rows */
|
/* Sample rows */
|
||||||
/* TODO Ensure within maintenance_work_mem */
|
/* TODO Ensure within maintenance_work_mem */
|
||||||
buildstate->samples = NIL;
|
buildstate->samples = VectorArrayInit(numSamples, buildstate->dimensions);
|
||||||
buildstate->targsamples = numSamples;
|
|
||||||
if (buildstate->heap != NULL)
|
if (buildstate->heap != NULL)
|
||||||
{
|
{
|
||||||
SampleRows(buildstate);
|
SampleRows(buildstate);
|
||||||
|
|
||||||
if (list_length(buildstate->samples) < buildstate->lists)
|
if (buildstate->samples->length < buildstate->lists)
|
||||||
{
|
{
|
||||||
ereport(NOTICE,
|
ereport(NOTICE,
|
||||||
(errmsg("ivfflat index created with little data"),
|
(errmsg("ivfflat index created with little data"),
|
||||||
@@ -474,7 +467,7 @@ ComputeCenters(IvfflatBuildState * buildstate)
|
|||||||
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
|
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
|
||||||
|
|
||||||
/* Free samples before we allocate more memory */
|
/* Free samples before we allocate more memory */
|
||||||
list_free_deep(buildstate->samples);
|
VectorArrayFree(buildstate->samples);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -513,30 +506,29 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
Size listSize;
|
OffsetNumber offno;
|
||||||
|
Size itemsz;
|
||||||
IvfflatList list;
|
IvfflatList list;
|
||||||
|
|
||||||
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||||
list = palloc(listSize);
|
list = palloc(itemsz);
|
||||||
|
|
||||||
buf = IvfflatNewBuffer(index, forkNum);
|
buf = IvfflatNewBuffer(index, forkNum);
|
||||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||||
|
|
||||||
for (int i = 0; i < lists; i++)
|
for (int i = 0; i < lists; i++)
|
||||||
{
|
{
|
||||||
OffsetNumber offno;
|
|
||||||
|
|
||||||
/* Load list */
|
/* Load list */
|
||||||
list->startPage = InvalidBlockNumber;
|
list->startPage = InvalidBlockNumber;
|
||||||
list->insertPage = InvalidBlockNumber;
|
list->insertPage = InvalidBlockNumber;
|
||||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||||
|
|
||||||
/* Ensure free space */
|
/* Ensure free space */
|
||||||
if (PageGetFreeSpace(page) < listSize)
|
if (PageGetFreeSpace(page) < itemsz)
|
||||||
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
||||||
|
|
||||||
/* Add the item */
|
/* Add the item */
|
||||||
offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
|
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false);
|
||||||
if (offno == InvalidOffsetNumber)
|
if (offno == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
|
|||||||
@@ -71,7 +71,7 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
|||||||
int lists;
|
int lists;
|
||||||
double ratio;
|
double ratio;
|
||||||
double spc_seq_page_cost;
|
double spc_seq_page_cost;
|
||||||
Relation index;
|
Relation indexRel;
|
||||||
#if PG_VERSION_NUM < 120000
|
#if PG_VERSION_NUM < 120000
|
||||||
List *qinfos;
|
List *qinfos;
|
||||||
#endif
|
#endif
|
||||||
@@ -89,9 +89,9 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
|||||||
|
|
||||||
MemSet(&costs, 0, sizeof(costs));
|
MemSet(&costs, 0, sizeof(costs));
|
||||||
|
|
||||||
index = index_open(path->indexinfo->indexoid, NoLock);
|
indexRel = index_open(path->indexinfo->indexoid, NoLock);
|
||||||
IvfflatGetMetaPageInfo(index, &lists, NULL);
|
lists = IvfflatGetLists(indexRel);
|
||||||
index_close(index, NoLock);
|
index_close(indexRel, NoLock);
|
||||||
|
|
||||||
/* Get the ratio of lists that we need to visit */
|
/* Get the ratio of lists that we need to visit */
|
||||||
ratio = ((double) ivfflat_probes) / lists;
|
ratio = ((double) ivfflat_probes) / lists;
|
||||||
|
|||||||
@@ -80,10 +80,6 @@
|
|||||||
#define RandomInt() random()
|
#define RandomInt() random()
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
#if PG_VERSION_NUM < 130000
|
|
||||||
#define list_sort(list, cmp) list_qsort(list, cmp)
|
|
||||||
#endif
|
|
||||||
|
|
||||||
/* Variables */
|
/* Variables */
|
||||||
extern int ivfflat_probes;
|
extern int ivfflat_probes;
|
||||||
|
|
||||||
@@ -182,8 +178,7 @@ typedef struct IvfflatBuildState
|
|||||||
Oid collation;
|
Oid collation;
|
||||||
|
|
||||||
/* Variables */
|
/* Variables */
|
||||||
List *samples;
|
VectorArray samples;
|
||||||
int targsamples;
|
|
||||||
VectorArray centers;
|
VectorArray centers;
|
||||||
ListInfo *listInfo;
|
ListInfo *listInfo;
|
||||||
Vector *normvec;
|
Vector *normvec;
|
||||||
@@ -249,8 +244,8 @@ typedef struct IvfflatScanList
|
|||||||
typedef struct IvfflatScanOpaqueData
|
typedef struct IvfflatScanOpaqueData
|
||||||
{
|
{
|
||||||
int probes;
|
int probes;
|
||||||
int dimensions;
|
|
||||||
bool first;
|
bool first;
|
||||||
|
Buffer buf;
|
||||||
|
|
||||||
/* Sorting */
|
/* Sorting */
|
||||||
Tuplesortstate *sortstate;
|
Tuplesortstate *sortstate;
|
||||||
@@ -279,11 +274,10 @@ typedef IvfflatScanOpaqueData * IvfflatScanOpaque;
|
|||||||
VectorArray VectorArrayInit(int maxlen, int dimensions);
|
VectorArray VectorArrayInit(int maxlen, int dimensions);
|
||||||
void VectorArrayFree(VectorArray arr);
|
void VectorArrayFree(VectorArray arr);
|
||||||
void PrintVectorArray(char *msg, VectorArray arr);
|
void PrintVectorArray(char *msg, VectorArray arr);
|
||||||
void IvfflatKmeans(Relation index, List *samples, VectorArray centers);
|
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum);
|
||||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
int IvfflatGetLists(Relation index);
|
int IvfflatGetLists(Relation index);
|
||||||
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
|
||||||
void IvfflatUpdateList(Relation index, ListInfo listInfo, BlockNumber insertPage, BlockNumber originalInsertPage, BlockNumber startPage, ForkNumber forkNum);
|
void IvfflatUpdateList(Relation index, ListInfo listInfo, BlockNumber insertPage, BlockNumber originalInsertPage, BlockNumber startPage, ForkNumber forkNum);
|
||||||
void IvfflatCommitBuffer(Buffer buf, GenericXLogState *state);
|
void IvfflatCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||||
void IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state, ForkNumber forkNum);
|
void IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state, ForkNumber forkNum);
|
||||||
|
|||||||
@@ -11,37 +11,36 @@
|
|||||||
* Find the list that minimizes the distance function
|
* Find the list that minimizes the distance function
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||||
{
|
{
|
||||||
|
Buffer cbuf;
|
||||||
|
Page cpage;
|
||||||
|
IvfflatList list;
|
||||||
|
double distance;
|
||||||
double minDistance = DBL_MAX;
|
double minDistance = DBL_MAX;
|
||||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
|
OffsetNumber offno;
|
||||||
|
OffsetNumber maxoffno;
|
||||||
|
|
||||||
/* Avoid compiler warning */
|
/* Avoid compiler warning */
|
||||||
listInfo->blkno = nextblkno;
|
listInfo->blkno = nextblkno;
|
||||||
listInfo->offno = FirstOffsetNumber;
|
listInfo->offno = FirstOffsetNumber;
|
||||||
|
|
||||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC);
|
||||||
collation = index->rd_indcollation[0];
|
collation = rel->rd_indcollation[0];
|
||||||
|
|
||||||
/* Search all list pages */
|
/* Search all list pages */
|
||||||
while (BlockNumberIsValid(nextblkno))
|
while (BlockNumberIsValid(nextblkno))
|
||||||
{
|
{
|
||||||
Buffer cbuf;
|
cbuf = ReadBuffer(rel, nextblkno);
|
||||||
Page cpage;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
cbuf = ReadBuffer(index, nextblkno);
|
|
||||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||||
cpage = BufferGetPage(cbuf);
|
cpage = BufferGetPage(cbuf);
|
||||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||||
|
|
||||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||||
{
|
{
|
||||||
IvfflatList list;
|
|
||||||
double distance;
|
|
||||||
|
|
||||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||||
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
||||||
|
|
||||||
@@ -64,7 +63,7 @@ FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo
|
|||||||
* Insert a tuple into the index
|
* Insert a tuple into the index
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||||
{
|
{
|
||||||
IndexTuple itup;
|
IndexTuple itup;
|
||||||
Datum value;
|
Datum value;
|
||||||
@@ -81,33 +80,33 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Normalize if needed */
|
/* Normalize if needed */
|
||||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
|
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL))
|
||||||
return;
|
return;
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Find the insert page - sets the page and list info */
|
/* Find the insert page - sets the page and list info */
|
||||||
FindInsertPage(index, values, &insertPage, &listInfo);
|
FindInsertPage(rel, values, &insertPage, &listInfo);
|
||||||
Assert(BlockNumberIsValid(insertPage));
|
Assert(BlockNumberIsValid(insertPage));
|
||||||
originalInsertPage = insertPage;
|
originalInsertPage = insertPage;
|
||||||
|
|
||||||
/* Form tuple */
|
/* Form tuple */
|
||||||
itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
|
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull);
|
||||||
itup->t_tid = *heap_tid;
|
itup->t_tid = *heap_tid;
|
||||||
|
|
||||||
/* Get tuple size */
|
/* Get tuple size */
|
||||||
itemsz = MAXALIGN(IndexTupleSize(itup));
|
itemsz = MAXALIGN(IndexTupleSize(itup));
|
||||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
|
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
|
||||||
|
|
||||||
/* Find a page to insert the item */
|
/* Find a page to insert the item */
|
||||||
for (;;)
|
for (;;)
|
||||||
{
|
{
|
||||||
buf = ReadBuffer(index, insertPage);
|
buf = ReadBuffer(rel, insertPage);
|
||||||
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
||||||
|
|
||||||
state = GenericXLogStart(index);
|
state = GenericXLogStart(rel);
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
|
|
||||||
if (PageGetFreeSpace(page) >= itemsz)
|
if (PageGetFreeSpace(page) >= itemsz)
|
||||||
@@ -127,9 +126,9 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
Page newpage;
|
Page newpage;
|
||||||
|
|
||||||
/* Add a new page */
|
/* Add a new page */
|
||||||
LockRelationForExtension(index, ExclusiveLock);
|
LockRelationForExtension(rel, ExclusiveLock);
|
||||||
newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
|
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM);
|
||||||
UnlockRelationForExtension(index, ExclusiveLock);
|
UnlockRelationForExtension(rel, ExclusiveLock);
|
||||||
|
|
||||||
/* Init new page */
|
/* Init new page */
|
||||||
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
||||||
@@ -142,13 +141,15 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(newbuf);
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
/* Prepare new buffer */
|
/* Prepare new buffer */
|
||||||
state = GenericXLogStart(index);
|
state = GenericXLogStart(rel);
|
||||||
buf = newbuf;
|
buf = newbuf;
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
break;
|
break;
|
||||||
@@ -157,13 +158,13 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
|
|
||||||
/* Add to next offset */
|
/* Add to next offset */
|
||||||
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel));
|
||||||
|
|
||||||
IvfflatCommitBuffer(buf, state);
|
IvfflatCommitBuffer(buf, state);
|
||||||
|
|
||||||
/* Update the insert page */
|
/* Update the insert page */
|
||||||
if (insertPage != originalInsertPage)
|
if (insertPage != originalInsertPage)
|
||||||
IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
|
|||||||
119
src/ivfkmeans.c
119
src/ivfkmeans.c
@@ -12,38 +12,38 @@
|
|||||||
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
|
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBound)
|
InitCenters(Relation index, VectorArray samples, VectorArray centers, float *lowerBound)
|
||||||
{
|
{
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
int64 j;
|
int64 j;
|
||||||
float *weight = palloc(list_length(samples) * sizeof(float));
|
double distance;
|
||||||
|
double sum;
|
||||||
|
double choice;
|
||||||
|
Vector *vec;
|
||||||
|
float *weight = palloc(samples->length * sizeof(float));
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = list_length(samples);
|
int numSamples = samples->length;
|
||||||
|
|
||||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
|
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
|
||||||
collation = index->rd_indcollation[0];
|
collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
/* Choose an initial center uniformly at random */
|
/* Choose an initial center uniformly at random */
|
||||||
VectorArraySet(centers, 0, list_nth(samples, RandomInt() % list_length(samples)));
|
VectorArraySet(centers, 0, VectorArrayGet(samples, RandomInt() % samples->length));
|
||||||
centers->length++;
|
centers->length++;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
weight[j] = FLT_MAX;
|
weight[j] = DBL_MAX;
|
||||||
|
|
||||||
for (int i = 0; i < numCenters; i++)
|
for (int i = 0; i < numCenters; i++)
|
||||||
{
|
{
|
||||||
double sum;
|
|
||||||
double choice;
|
|
||||||
|
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
sum = 0.0;
|
sum = 0.0;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
Vector *vec = list_nth(samples, j);
|
vec = VectorArrayGet(samples, j);
|
||||||
double distance;
|
|
||||||
|
|
||||||
/* Only need to compute distance for new center */
|
/* Only need to compute distance for new center */
|
||||||
/* TODO Use triangle inequality to reduce distance calculations */
|
/* TODO Use triangle inequality to reduce distance calculations */
|
||||||
@@ -74,7 +74,7 @@ InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBoun
|
|||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
|
|
||||||
VectorArraySet(centers, i + 1, list_nth(samples, j));
|
VectorArraySet(centers, i + 1, VectorArrayGet(samples, j));
|
||||||
centers->length++;
|
centers->length++;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -106,41 +106,26 @@ CompareVectors(const void *a, const void *b)
|
|||||||
return vector_cmp_internal((Vector *) a, (Vector *) b);
|
return vector_cmp_internal((Vector *) a, (Vector *) b);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Compare list vectors
|
|
||||||
*/
|
|
||||||
static int
|
|
||||||
#if PG_VERSION_NUM >= 130000
|
|
||||||
CompareListVectors(const ListCell *a, const ListCell *b)
|
|
||||||
#else
|
|
||||||
CompareListVectors(const void *a, const void *b)
|
|
||||||
#endif
|
|
||||||
{
|
|
||||||
Vector *va = lfirst((ListCell *) a);
|
|
||||||
Vector *vb = lfirst((ListCell *) b);
|
|
||||||
|
|
||||||
return CompareVectors(va, vb);
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Quick approach if we have little data
|
* Quick approach if we have little data
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
QuickCenters(Relation index, List *samples, VectorArray centers)
|
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
|
Vector *vec;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
Oid collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||||
|
|
||||||
/* Copy existing vectors while avoiding duplicates */
|
/* Copy existing vectors while avoiding duplicates */
|
||||||
if (list_length(samples) > 0)
|
if (samples->length > 0)
|
||||||
{
|
{
|
||||||
list_sort(samples, CompareListVectors);
|
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||||
for (int i = 0; i < list_length(samples); i++)
|
for (int i = 0; i < samples->length; i++)
|
||||||
{
|
{
|
||||||
Vector *vec = list_nth(samples, i);
|
vec = VectorArrayGet(samples, i);
|
||||||
|
|
||||||
if (i == 0 || CompareVectors(vec, list_nth(samples, i - 1)) != 0)
|
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||||
{
|
{
|
||||||
VectorArraySet(centers, centers->length, vec);
|
VectorArraySet(centers, centers->length, vec);
|
||||||
centers->length++;
|
centers->length++;
|
||||||
@@ -151,7 +136,7 @@ QuickCenters(Relation index, List *samples, VectorArray centers)
|
|||||||
/* Fill remaining with random data */
|
/* Fill remaining with random data */
|
||||||
while (centers->length < centers->maxlen)
|
while (centers->length < centers->maxlen)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(centers, centers->length);
|
vec = VectorArrayGet(centers, centers->length);
|
||||||
|
|
||||||
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
||||||
vec->dim = dimensions;
|
vec->dim = dimensions;
|
||||||
@@ -176,18 +161,19 @@ QuickCenters(Relation index, List *samples, VectorArray centers)
|
|||||||
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
|
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
Vector *vec;
|
Vector *vec;
|
||||||
Vector *newCenter;
|
Vector *newCenter;
|
||||||
|
int iteration;
|
||||||
int64 j;
|
int64 j;
|
||||||
int64 k;
|
int64 k;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = list_length(samples);
|
int numSamples = samples->length;
|
||||||
VectorArray newCenters;
|
VectorArray newCenters;
|
||||||
int *centerCounts;
|
int *centerCounts;
|
||||||
int *closestCenters;
|
int *closestCenters;
|
||||||
@@ -196,9 +182,17 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
float *s;
|
float *s;
|
||||||
float *halfcdist;
|
float *halfcdist;
|
||||||
float *newcdist;
|
float *newcdist;
|
||||||
|
int changes;
|
||||||
|
double minDistance;
|
||||||
|
int closestCenter;
|
||||||
|
double distance;
|
||||||
|
bool rj;
|
||||||
|
bool rjreset;
|
||||||
|
double dxcx;
|
||||||
|
double dxc;
|
||||||
|
|
||||||
/* Calculate allocation sizes */
|
/* Calculate allocation sizes */
|
||||||
Size samplesSize = 0;
|
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||||
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
|
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
|
||||||
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
|
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
|
||||||
Size centerCountsSize = sizeof(int) * numCenters;
|
Size centerCountsSize = sizeof(int) * numCenters;
|
||||||
@@ -253,14 +247,14 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
float minDistance = FLT_MAX;
|
minDistance = DBL_MAX;
|
||||||
int closestCenter = 0;
|
closestCenter = 0;
|
||||||
|
|
||||||
/* Find closest center */
|
/* Find closest center */
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
/* TODO Use Lemma 1 in k-means++ initialization */
|
/* TODO Use Lemma 1 in k-means++ initialization */
|
||||||
float distance = lowerBound[j * numCenters + k];
|
distance = lowerBound[j * numCenters + k];
|
||||||
|
|
||||||
if (distance < minDistance)
|
if (distance < minDistance)
|
||||||
{
|
{
|
||||||
@@ -274,14 +268,13 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Give 500 iterations to converge */
|
/* Give 500 iterations to converge */
|
||||||
for (int iteration = 0; iteration < 500; iteration++)
|
for (iteration = 0; iteration < 500; iteration++)
|
||||||
{
|
{
|
||||||
int changes = 0;
|
|
||||||
bool rjreset;
|
|
||||||
|
|
||||||
/* Can take a while, so ensure we can interrupt */
|
/* Can take a while, so ensure we can interrupt */
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
|
changes = 0;
|
||||||
|
|
||||||
/* Step 1: For all centers, compute distance */
|
/* Step 1: For all centers, compute distance */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
@@ -289,8 +282,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = j + 1; k < numCenters; k++)
|
for (k = j + 1; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
halfcdist[j * numCenters + k] = distance;
|
halfcdist[j * numCenters + k] = distance;
|
||||||
halfcdist[k * numCenters + j] = distance;
|
halfcdist[k * numCenters + j] = distance;
|
||||||
}
|
}
|
||||||
@@ -299,12 +291,10 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
/* For all centers c, compute s(c) */
|
/* For all centers c, compute s(c) */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
float minDistance = FLT_MAX;
|
minDistance = DBL_MAX;
|
||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance;
|
|
||||||
|
|
||||||
if (j == k)
|
if (j == k)
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
@@ -320,8 +310,6 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
bool rj;
|
|
||||||
|
|
||||||
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
||||||
if (upperBound[j] <= s[closestCenters[j]])
|
if (upperBound[j] <= s[closestCenters[j]])
|
||||||
continue;
|
continue;
|
||||||
@@ -330,8 +318,6 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float dxcx;
|
|
||||||
|
|
||||||
/* Step 3: For all remaining points x and centers c */
|
/* Step 3: For all remaining points x and centers c */
|
||||||
if (k == closestCenters[j])
|
if (k == closestCenters[j])
|
||||||
continue;
|
continue;
|
||||||
@@ -342,7 +328,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
|
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
vec = list_nth(samples, j);
|
vec = VectorArrayGet(samples, j);
|
||||||
|
|
||||||
/* Step 3a */
|
/* Step 3a */
|
||||||
if (rj)
|
if (rj)
|
||||||
@@ -361,7 +347,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
/* Step 3b */
|
/* Step 3b */
|
||||||
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
||||||
{
|
{
|
||||||
float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
/* d(x,c) calculated */
|
/* d(x,c) calculated */
|
||||||
lowerBound[j * numCenters + k] = dxc;
|
lowerBound[j * numCenters + k] = dxc;
|
||||||
@@ -375,6 +361,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
changes++;
|
changes++;
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
@@ -391,9 +378,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
int closestCenter;
|
vec = VectorArrayGet(samples, j);
|
||||||
|
|
||||||
vec = list_nth(samples, j);
|
|
||||||
closestCenter = closestCenters[j];
|
closestCenter = closestCenters[j];
|
||||||
|
|
||||||
/* Increment sum and count of closest center */
|
/* Increment sum and count of closest center */
|
||||||
@@ -441,7 +426,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
{
|
{
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance = lowerBound[j * numCenters + k] - newcdist[k];
|
distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||||
|
|
||||||
if (distance < 0)
|
if (distance < 0)
|
||||||
distance = 0;
|
distance = 0;
|
||||||
@@ -457,7 +442,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
|
|||||||
|
|
||||||
/* Step 7 */
|
/* Step 7 */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
|
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions));
|
||||||
|
|
||||||
if (changes == 0 && iteration != 0)
|
if (changes == 0 && iteration != 0)
|
||||||
break;
|
break;
|
||||||
@@ -480,6 +465,9 @@ static void
|
|||||||
CheckCenters(Relation index, VectorArray centers)
|
CheckCenters(Relation index, VectorArray centers)
|
||||||
{
|
{
|
||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
|
Oid collation;
|
||||||
|
Vector *vec;
|
||||||
|
double norm;
|
||||||
|
|
||||||
if (centers->length != centers->maxlen)
|
if (centers->length != centers->maxlen)
|
||||||
elog(ERROR, "Not enough centers. Please report a bug.");
|
elog(ERROR, "Not enough centers. Please report a bug.");
|
||||||
@@ -487,7 +475,7 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
/* Ensure no NaN or infinite values */
|
/* Ensure no NaN or infinite values */
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(centers, i);
|
vec = VectorArrayGet(centers, i);
|
||||||
|
|
||||||
for (int j = 0; j < vec->dim; j++)
|
for (int j = 0; j < vec->dim; j++)
|
||||||
{
|
{
|
||||||
@@ -513,12 +501,11 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
Oid collation = index->rd_indcollation[0];
|
collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||||
|
|
||||||
if (norm == 0)
|
if (norm == 0)
|
||||||
elog(ERROR, "Zero norm detected. Please report a bug.");
|
elog(ERROR, "Zero norm detected. Please report a bug.");
|
||||||
}
|
}
|
||||||
@@ -530,9 +517,9 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
* We use spherical k-means for inner product and cosine
|
* We use spherical k-means for inner product and cosine
|
||||||
*/
|
*/
|
||||||
void
|
void
|
||||||
IvfflatKmeans(Relation index, List *samples, VectorArray centers)
|
IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
if (list_length(samples) <= centers->maxlen)
|
if (samples->length <= centers->maxlen)
|
||||||
QuickCenters(index, samples, centers);
|
QuickCenters(index, samples, centers);
|
||||||
else
|
else
|
||||||
ElkanKmeans(index, samples, centers);
|
ElkanKmeans(index, samples, centers);
|
||||||
|
|||||||
114
src/ivfscan.c
114
src/ivfscan.c
@@ -31,36 +31,36 @@ CompareLists(const pairingheap_node *a, const pairingheap_node *b, void *arg)
|
|||||||
static void
|
static void
|
||||||
GetScanLists(IndexScanDesc scan, Datum value)
|
GetScanLists(IndexScanDesc scan, Datum value)
|
||||||
{
|
{
|
||||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
Buffer cbuf;
|
||||||
|
Page cpage;
|
||||||
|
IvfflatList list;
|
||||||
|
OffsetNumber offno;
|
||||||
|
OffsetNumber maxoffno;
|
||||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||||
int listCount = 0;
|
int listCount = 0;
|
||||||
|
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||||
|
double distance;
|
||||||
|
IvfflatScanList *scanlist;
|
||||||
double maxDistance = DBL_MAX;
|
double maxDistance = DBL_MAX;
|
||||||
|
|
||||||
/* Search all list pages */
|
/* Search all list pages */
|
||||||
while (BlockNumberIsValid(nextblkno))
|
while (BlockNumberIsValid(nextblkno))
|
||||||
{
|
{
|
||||||
Buffer cbuf;
|
|
||||||
Page cpage;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
cbuf = ReadBuffer(scan->indexRelation, nextblkno);
|
cbuf = ReadBuffer(scan->indexRelation, nextblkno);
|
||||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||||
cpage = BufferGetPage(cbuf);
|
cpage = BufferGetPage(cbuf);
|
||||||
|
|
||||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||||
|
|
||||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||||
{
|
{
|
||||||
IvfflatList list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||||
double distance;
|
|
||||||
|
|
||||||
/* Use procinfo from the index instead of scan key for performance */
|
/* Use procinfo from the index instead of scan key for performance */
|
||||||
distance = DatumGetFloat8(FunctionCall2Coll(so->procinfo, so->collation, PointerGetDatum(&list->center), value));
|
distance = DatumGetFloat8(FunctionCall2Coll(so->procinfo, so->collation, PointerGetDatum(&list->center), value));
|
||||||
|
|
||||||
if (listCount < so->probes)
|
if (listCount < so->probes)
|
||||||
{
|
{
|
||||||
IvfflatScanList *scanlist;
|
|
||||||
|
|
||||||
scanlist = &so->lists[listCount];
|
scanlist = &so->lists[listCount];
|
||||||
scanlist->startPage = list->startPage;
|
scanlist->startPage = list->startPage;
|
||||||
scanlist->distance = distance;
|
scanlist->distance = distance;
|
||||||
@@ -75,8 +75,6 @@ GetScanLists(IndexScanDesc scan, Datum value)
|
|||||||
}
|
}
|
||||||
else if (distance < maxDistance)
|
else if (distance < maxDistance)
|
||||||
{
|
{
|
||||||
IvfflatScanList *scanlist;
|
|
||||||
|
|
||||||
/* Remove */
|
/* Remove */
|
||||||
scanlist = (IvfflatScanList *) pairingheap_remove_first(so->listQueue);
|
scanlist = (IvfflatScanList *) pairingheap_remove_first(so->listQueue);
|
||||||
|
|
||||||
@@ -103,6 +101,14 @@ static void
|
|||||||
GetScanItems(IndexScanDesc scan, Datum value)
|
GetScanItems(IndexScanDesc scan, Datum value)
|
||||||
{
|
{
|
||||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||||
|
Buffer buf;
|
||||||
|
Page page;
|
||||||
|
IndexTuple itup;
|
||||||
|
BlockNumber searchPage;
|
||||||
|
OffsetNumber offno;
|
||||||
|
OffsetNumber maxoffno;
|
||||||
|
Datum datum;
|
||||||
|
bool isnull;
|
||||||
TupleDesc tupdesc = RelationGetDescr(scan->indexRelation);
|
TupleDesc tupdesc = RelationGetDescr(scan->indexRelation);
|
||||||
double tuples = 0;
|
double tuples = 0;
|
||||||
|
|
||||||
@@ -122,28 +128,19 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
/* Search closest probes lists */
|
/* Search closest probes lists */
|
||||||
while (!pairingheap_is_empty(so->listQueue))
|
while (!pairingheap_is_empty(so->listQueue))
|
||||||
{
|
{
|
||||||
BlockNumber searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
||||||
|
|
||||||
/* Search all entry pages for list */
|
/* Search all entry pages for list */
|
||||||
while (BlockNumberIsValid(searchPage))
|
while (BlockNumberIsValid(searchPage))
|
||||||
{
|
{
|
||||||
Buffer buf;
|
|
||||||
Page page;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
buf = ReadBufferExtended(scan->indexRelation, MAIN_FORKNUM, searchPage, RBM_NORMAL, bas);
|
buf = ReadBufferExtended(scan->indexRelation, MAIN_FORKNUM, searchPage, RBM_NORMAL, bas);
|
||||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||||
page = BufferGetPage(buf);
|
page = BufferGetPage(buf);
|
||||||
maxoffno = PageGetMaxOffsetNumber(page);
|
maxoffno = PageGetMaxOffsetNumber(page);
|
||||||
|
|
||||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||||
{
|
{
|
||||||
IndexTuple itup;
|
itup = (IndexTuple) PageGetItem(page, PageGetItemId(page, offno));
|
||||||
Datum datum;
|
|
||||||
bool isnull;
|
|
||||||
ItemId itemid = PageGetItemId(page, offno);
|
|
||||||
|
|
||||||
itup = (IndexTuple) PageGetItem(page, itemid);
|
|
||||||
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -157,6 +154,8 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
slot->tts_isnull[0] = false;
|
slot->tts_isnull[0] = false;
|
||||||
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
||||||
slot->tts_isnull[1] = false;
|
slot->tts_isnull[1] = false;
|
||||||
|
slot->tts_values[2] = Int32GetDatum((int) searchPage);
|
||||||
|
slot->tts_isnull[2] = false;
|
||||||
ExecStoreVirtualTuple(slot);
|
ExecStoreVirtualTuple(slot);
|
||||||
|
|
||||||
tuplesort_puttupleslot(so->sortstate, slot);
|
tuplesort_puttupleslot(so->sortstate, slot);
|
||||||
@@ -181,6 +180,29 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
|||||||
tuplesort_performsort(so->sortstate);
|
tuplesort_performsort(so->sortstate);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get dimensions from metapage
|
||||||
|
*/
|
||||||
|
static int
|
||||||
|
GetDimensions(Relation index)
|
||||||
|
{
|
||||||
|
Buffer buf;
|
||||||
|
Page page;
|
||||||
|
IvfflatMetaPage metap;
|
||||||
|
int dimensions;
|
||||||
|
|
||||||
|
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
||||||
|
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||||
|
page = BufferGetPage(buf);
|
||||||
|
metap = IvfflatPageGetMeta(page);
|
||||||
|
|
||||||
|
dimensions = metap->dimensions;
|
||||||
|
|
||||||
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
|
return dimensions;
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Prepare for an index scan
|
* Prepare for an index scan
|
||||||
*/
|
*/
|
||||||
@@ -190,7 +212,6 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
IndexScanDesc scan;
|
IndexScanDesc scan;
|
||||||
IvfflatScanOpaque so;
|
IvfflatScanOpaque so;
|
||||||
int lists;
|
int lists;
|
||||||
int dimensions;
|
|
||||||
AttrNumber attNums[] = {1};
|
AttrNumber attNums[] = {1};
|
||||||
Oid sortOperators[] = {Float8LessOperator};
|
Oid sortOperators[] = {Float8LessOperator};
|
||||||
Oid sortCollations[] = {InvalidOid};
|
Oid sortCollations[] = {InvalidOid};
|
||||||
@@ -198,17 +219,15 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
int probes = ivfflat_probes;
|
int probes = ivfflat_probes;
|
||||||
|
|
||||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||||
|
lists = IvfflatGetLists(scan->indexRelation);
|
||||||
/* Get lists and dimensions from metapage */
|
|
||||||
IvfflatGetMetaPageInfo(index, &lists, &dimensions);
|
|
||||||
|
|
||||||
if (probes > lists)
|
if (probes > lists)
|
||||||
probes = lists;
|
probes = lists;
|
||||||
|
|
||||||
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
||||||
|
so->buf = InvalidBuffer;
|
||||||
so->first = true;
|
so->first = true;
|
||||||
so->probes = probes;
|
so->probes = probes;
|
||||||
so->dimensions = dimensions;
|
|
||||||
|
|
||||||
/* Set support functions */
|
/* Set support functions */
|
||||||
so->procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
so->procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||||
@@ -217,12 +236,13 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
|
|
||||||
/* Create tuple description for sorting */
|
/* Create tuple description for sorting */
|
||||||
#if PG_VERSION_NUM >= 120000
|
#if PG_VERSION_NUM >= 120000
|
||||||
so->tupdesc = CreateTemplateTupleDesc(2);
|
so->tupdesc = CreateTemplateTupleDesc(3);
|
||||||
#else
|
#else
|
||||||
so->tupdesc = CreateTemplateTupleDesc(2, false);
|
so->tupdesc = CreateTemplateTupleDesc(3, false);
|
||||||
#endif
|
#endif
|
||||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
||||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "tid", TIDOID, -1, 0);
|
||||||
|
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
|
||||||
|
|
||||||
/* Prep sort */
|
/* Prep sort */
|
||||||
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
||||||
@@ -288,13 +308,8 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan ivfflat index without order");
|
elog(ERROR, "cannot scan ivfflat index without order");
|
||||||
|
|
||||||
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
|
|
||||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
|
||||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
|
||||||
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
|
||||||
|
|
||||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||||
value = PointerGetDatum(InitVector(so->dimensions));
|
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||||
else
|
else
|
||||||
{
|
{
|
||||||
value = scan->orderByData->sk_argument;
|
value = scan->orderByData->sk_argument;
|
||||||
@@ -319,14 +334,27 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
|
|
||||||
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
||||||
{
|
{
|
||||||
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
ItemPointer tid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||||
|
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 120000
|
#if PG_VERSION_NUM >= 120000
|
||||||
scan->xs_heaptid = *heaptid;
|
scan->xs_heaptid = *tid;
|
||||||
#else
|
#else
|
||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *tid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
/* Unpin buffer */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
|
/*
|
||||||
|
* An index scan must maintain a pin on the index page holding the
|
||||||
|
* item last returned by amgettuple
|
||||||
|
*
|
||||||
|
* https://www.postgresql.org/docs/current/index-locking.html
|
||||||
|
*/
|
||||||
|
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
@@ -342,6 +370,10 @@ ivfflatendscan(IndexScanDesc scan)
|
|||||||
{
|
{
|
||||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||||
|
|
||||||
|
/* Release pin */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
pairingheap_free(so->listQueue);
|
pairingheap_free(so->listQueue);
|
||||||
tuplesort_end(so->sortstate);
|
tuplesort_end(so->sortstate);
|
||||||
|
|
||||||
|
|||||||
@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
|
|||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
IvfflatOptionalProcInfo(Relation index, uint16 procnum)
|
IvfflatOptionalProcInfo(Relation rel, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(index, 1, procnum);
|
return index_getprocinfo(rel, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -136,6 +136,7 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
|||||||
void
|
void
|
||||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -159,6 +160,8 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
|||||||
IvfflatInitPage(newbuf, newpage);
|
IvfflatInitPage(newbuf, newpage);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(*buf);
|
||||||
|
MarkBufferDirty(newbuf);
|
||||||
GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
|
||||||
|
|
||||||
/* Unlock */
|
/* Unlock */
|
||||||
@@ -169,29 +172,6 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
|||||||
*buf = newbuf;
|
*buf = newbuf;
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Get the metapage info
|
|
||||||
*/
|
|
||||||
void
|
|
||||||
IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions)
|
|
||||||
{
|
|
||||||
Buffer buf;
|
|
||||||
Page page;
|
|
||||||
IvfflatMetaPage metap;
|
|
||||||
|
|
||||||
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
|
||||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
|
||||||
page = BufferGetPage(buf);
|
|
||||||
metap = IvfflatPageGetMeta(page);
|
|
||||||
|
|
||||||
*lists = metap->lists;
|
|
||||||
|
|
||||||
if (dimensions != NULL)
|
|
||||||
*dimensions = metap->dimensions;
|
|
||||||
|
|
||||||
UnlockReleaseBuffer(buf);
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Update the start or insert page of a list
|
* Update the start or insert page of a list
|
||||||
*/
|
*/
|
||||||
|
|||||||
@@ -107,6 +107,7 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
|||||||
{
|
{
|
||||||
/* Delete tuples */
|
/* Delete tuples */
|
||||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
|
|||||||
@@ -1,43 +0,0 @@
|
|||||||
use strict;
|
|
||||||
use warnings;
|
|
||||||
use PostgresNode;
|
|
||||||
use TestLib;
|
|
||||||
use Test::More;
|
|
||||||
|
|
||||||
my $dim = 3;
|
|
||||||
|
|
||||||
my $array_sql = join(",", ('random()') x $dim);
|
|
||||||
|
|
||||||
# Initialize node
|
|
||||||
my $node = get_new_node('node');
|
|
||||||
$node->init;
|
|
||||||
$node->start;
|
|
||||||
|
|
||||||
# Create table and index
|
|
||||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
|
||||||
$node->safe_psql("postgres", "CREATE TABLE tst (i serial, v vector($dim));");
|
|
||||||
$node->safe_psql("postgres",
|
|
||||||
"INSERT INTO tst (v) SELECT ARRAY[$array_sql] FROM generate_series(1, 10000) i;"
|
|
||||||
);
|
|
||||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING ivfflat (v vector_l2_ops);");
|
|
||||||
|
|
||||||
# Delete data
|
|
||||||
$node->safe_psql("postgres", "DELETE FROM tst WHERE i % 100 != 0;");
|
|
||||||
|
|
||||||
my $exp = $node->safe_psql("postgres", qq(
|
|
||||||
SET enable_indexscan = off;
|
|
||||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
|
||||||
));
|
|
||||||
|
|
||||||
# Run twice to make sure correct tuples marked as dead
|
|
||||||
for (1 .. 2)
|
|
||||||
{
|
|
||||||
my $res = $node->safe_psql("postgres", qq(
|
|
||||||
SET enable_seqscan = off;
|
|
||||||
SET ivfflat.probes = 100;
|
|
||||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
|
||||||
));
|
|
||||||
is($res, $exp);
|
|
||||||
}
|
|
||||||
|
|
||||||
done_testing();
|
|
||||||
@@ -1,4 +1,4 @@
|
|||||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
comment = 'vector data type and ivfflat access method'
|
||||||
default_version = '0.5.1'
|
default_version = '0.5.0'
|
||||||
module_pathname = '$libdir/vector'
|
module_pathname = '$libdir/vector'
|
||||||
relocatable = true
|
relocatable = true
|
||||||
|
|||||||
Reference in New Issue
Block a user