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6 Commits

Author SHA1 Message Date
Andrew Kane
95bcda94da No need to set heap id [skip ci] 2023-10-22 16:15:34 -07:00
Andrew Kane
84c5aa14bf Added comment [skip ci] 2023-10-22 16:11:03 -07:00
Andrew Kane
72e741a5a6 Fixed issue with freeing 2023-10-22 16:07:56 -07:00
Andrew Kane
84ca6625a7 Added support for index-only scans to HNSW 2023-10-22 15:58:40 -07:00
Andrew Kane
3f49b95f01 Added Postgres 17 to CI [skip ci] 2023-10-19 00:37:24 -07:00
Andrew Kane
ef1bea7163 Updated checkout action [skip ci] 2023-10-19 00:36:53 -07:00
8 changed files with 78 additions and 82 deletions

View File

@@ -8,6 +8,8 @@ jobs:
fail-fast: false
matrix:
include:
- postgres: 17
os: ubuntu-22.04
- postgres: 16
os: ubuntu-22.04
- postgres: 15
@@ -21,7 +23,7 @@ jobs:
- postgres: 11
os: ubuntu-20.04
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4
- uses: ankane/setup-postgres@v1
with:
postgres-version: ${{ matrix.postgres }}
@@ -43,7 +45,7 @@ jobs:
runs-on: macos-latest
if: ${{ !startsWith(github.ref_name, 'windows') }}
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4
- uses: ankane/setup-postgres@v1
with:
postgres-version: 14
@@ -65,7 +67,7 @@ jobs:
runs-on: windows-latest
if: ${{ !startsWith(github.ref_name, 'mac') }}
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4
- uses: ankane/setup-postgres@v1
with:
postgres-version: 14

View File

@@ -155,6 +155,15 @@ hnswvalidate(Oid opclassoid)
return true;
}
/*
* Checks if index-only scan is supported
*/
static bool
hnswcanreturn(Relation indexRelation, int attno)
{
return attno == 1 && !OidIsValid(index_getprocid(indexRelation, 1, HNSW_NORM_PROC));
}
/*
* Define index handler
*
@@ -196,7 +205,7 @@ hnswhandler(PG_FUNCTION_ARGS)
amroutine->aminsert = hnswinsert;
amroutine->ambulkdelete = hnswbulkdelete;
amroutine->amvacuumcleanup = hnswvacuumcleanup;
amroutine->amcanreturn = NULL;
amroutine->amcanreturn = hnswcanreturn;
amroutine->amcostestimate = hnswcostestimate;
amroutine->amoptions = hnswoptions;
amroutine->amproperty = NULL; /* TODO AMPROP_DISTANCE_ORDERABLE */

View File

@@ -269,7 +269,7 @@ Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
void HnswInitPage(Buffer buf, Page page);
void HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state);
void HnswInit(void);
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool loadVec, HnswElement skipElement);
HnswElement HnswGetEntryPoint(Relation index);
void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
HnswElement HnswInitElement(ItemPointer tid, int m, double ml, int maxLevel);

View File

@@ -17,6 +17,7 @@ GetScanItems(IndexScanDesc scan, Datum q)
Relation index = scan->indexRelation;
FmgrInfo *procinfo = so->procinfo;
Oid collation = so->collation;
bool loadVec = scan->xs_want_itup;
List *ep;
List *w;
int m;
@@ -28,15 +29,15 @@ GetScanItems(IndexScanDesc scan, Datum q)
if (entryPoint == NULL)
return NIL;
ep = list_make1(HnswEntryCandidate(entryPoint, q, index, procinfo, collation, false));
ep = list_make1(HnswEntryCandidate(entryPoint, q, index, procinfo, collation, loadVec));
for (int lc = entryPoint->level; lc >= 1; lc--)
{
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, loadVec, NULL);
ep = w;
}
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, loadVec, NULL);
}
/*
@@ -113,6 +114,9 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
scan->opaque = so;
/* OK to always set since cheap */
scan->xs_itupdesc = RelationGetDescr(index);
return scan;
}
@@ -198,6 +202,15 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
hc->element->heaptids = list_delete_last(hc->element->heaptids);
if (scan->xs_want_itup)
{
Datum value = PointerGetDatum(hc->element->vec);
bool isnull = false;
/* Allocate in temporary context, so no need to free */
scan->xs_itup = index_form_tuple(scan->xs_itupdesc, &value, &isnull);
}
MemoryContextSwitchTo(oldCtx);
#if PG_VERSION_NUM >= 120000

View File

@@ -569,7 +569,7 @@ AddToVisited(HTAB *v, HnswCandidate * hc, Relation index, bool *found)
* Algorithm 2 from paper
*/
List *
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool loadVec, HnswElement skipElement)
{
ListCell *lc2;
@@ -645,7 +645,7 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
if (index == NULL)
eDistance = GetCandidateDistance(e, q, procinfo, collation);
else
HnswLoadElement(e->element, &eDistance, &q, index, procinfo, collation, inserting);
HnswLoadElement(e->element, &eDistance, &q, index, procinfo, collation, loadVec);
Assert(!e->element->deleted);

View File

@@ -11,7 +11,6 @@
#include "miscadmin.h"
#include "storage/bufmgr.h"
#include "tcop/tcopprot.h"
#include "utils/datum.h"
#include "utils/memutils.h"
#if PG_VERSION_NUM >= 140000
@@ -66,18 +65,11 @@
static void
AddSample(Datum *values, IvfflatBuildState * buildstate)
{
MemoryContext oldCtx;
Datum value;
int targsamples = buildstate->targsamples;
/* Use memory context since detoast can allocate */
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
VectorArray samples = buildstate->samples;
int targsamples = samples->maxlen;
/* Detoast once for all calls */
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
/* Restore memory context */
MemoryContextSwitchTo(oldCtx);
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
/*
* Normalize with KMEANS_NORM_PROC since spherical distance function
@@ -89,23 +81,18 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
return;
}
/* Copy datum */
value = datumCopy(value, false, -1);
/* Reset memory context */
MemoryContextReset(buildstate->tmpCtx);
if (list_length(buildstate->samples) < targsamples)
buildstate->samples = lappend(buildstate->samples, DatumGetVector(value));
if (samples->length < targsamples)
{
VectorArraySet(samples, samples->length, DatumGetVector(value));
samples->length++;
}
else
{
if (buildstate->rowstoskip < 0)
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, list_length(buildstate->samples), targsamples);
buildstate->rowstoskip = reservoir_get_next_S(&buildstate->rstate, samples->length, targsamples);
if (buildstate->rowstoskip <= 0)
{
ListCell *lc;
#if PG_VERSION_NUM >= 150000
int k = (int) (targsamples * sampler_random_fract(&buildstate->rstate.randstate));
#else
@@ -113,8 +100,7 @@ AddSample(Datum *values, IvfflatBuildState * buildstate)
#endif
Assert(k >= 0 && k < targsamples);
lc = list_nth_cell(buildstate->samples, k);
lfirst(lc) = DatumGetVector(value);
VectorArraySet(samples, k, DatumGetVector(value));
}
buildstate->rowstoskip -= 1;
@@ -129,13 +115,21 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
bool *isnull, bool tupleIsAlive, void *state)
{
IvfflatBuildState *buildstate = (IvfflatBuildState *) state;
MemoryContext oldCtx;
/* Skip nulls */
if (isnull[0])
return;
/* Use memory context since detoast can allocate */
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
/* Add sample */
AddSample(values, buildstate);
AddSample(values, state);
/* Reset memory context */
MemoryContextSwitchTo(oldCtx);
MemoryContextReset(buildstate->tmpCtx);
}
/*
@@ -144,7 +138,7 @@ SampleCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
static void
SampleRows(IvfflatBuildState * buildstate)
{
int targsamples = buildstate->targsamples;
int targsamples = buildstate->samples->maxlen;
BlockNumber totalblocks = RelationGetNumberOfBlocks(buildstate->heap);
buildstate->rowstoskip = -1;
@@ -455,13 +449,12 @@ ComputeCenters(IvfflatBuildState * buildstate)
/* Sample rows */
/* TODO Ensure within maintenance_work_mem */
buildstate->samples = NIL;
buildstate->targsamples = numSamples;
buildstate->samples = VectorArrayInit(numSamples, buildstate->dimensions);
if (buildstate->heap != NULL)
{
SampleRows(buildstate);
if (list_length(buildstate->samples) < buildstate->lists)
if (buildstate->samples->length < buildstate->lists)
{
ereport(NOTICE,
(errmsg("ivfflat index created with little data"),
@@ -474,7 +467,7 @@ ComputeCenters(IvfflatBuildState * buildstate)
IvfflatBench("k-means", IvfflatKmeans(buildstate->index, buildstate->samples, buildstate->centers));
/* Free samples before we allocate more memory */
list_free_deep(buildstate->samples);
VectorArrayFree(buildstate->samples);
}
/*

View File

@@ -80,10 +80,6 @@
#define RandomInt() random()
#endif
#if PG_VERSION_NUM < 130000
#define list_sort(list, cmp) list_qsort(list, cmp)
#endif
/* Variables */
extern int ivfflat_probes;
@@ -182,8 +178,7 @@ typedef struct IvfflatBuildState
Oid collation;
/* Variables */
List *samples;
int targsamples;
VectorArray samples;
VectorArray centers;
ListInfo *listInfo;
Vector *normvec;
@@ -279,7 +274,7 @@ typedef IvfflatScanOpaqueData * IvfflatScanOpaque;
VectorArray VectorArrayInit(int maxlen, int dimensions);
void VectorArrayFree(VectorArray arr);
void PrintVectorArray(char *msg, VectorArray arr);
void IvfflatKmeans(Relation index, List *samples, VectorArray centers);
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
int IvfflatGetLists(Relation index);

View File

@@ -12,20 +12,20 @@
* https://theory.stanford.edu/~sergei/papers/kMeansPP-soda.pdf
*/
static void
InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBound)
InitCenters(Relation index, VectorArray samples, VectorArray centers, float *lowerBound)
{
FmgrInfo *procinfo;
Oid collation;
int64 j;
float *weight = palloc(list_length(samples) * sizeof(float));
float *weight = palloc(samples->length * sizeof(float));
int numCenters = centers->maxlen;
int numSamples = list_length(samples);
int numSamples = samples->length;
procinfo = index_getprocinfo(index, 1, IVFFLAT_KMEANS_DISTANCE_PROC);
collation = index->rd_indcollation[0];
/* Choose an initial center uniformly at random */
VectorArraySet(centers, 0, list_nth(samples, RandomInt() % list_length(samples)));
VectorArraySet(centers, 0, VectorArrayGet(samples, RandomInt() % samples->length));
centers->length++;
for (j = 0; j < numSamples; j++)
@@ -42,7 +42,7 @@ InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBoun
for (j = 0; j < numSamples; j++)
{
Vector *vec = list_nth(samples, j);
Vector *vec = VectorArrayGet(samples, j);
double distance;
/* Only need to compute distance for new center */
@@ -74,7 +74,7 @@ InitCenters(Relation index, List *samples, VectorArray centers, float *lowerBoun
break;
}
VectorArraySet(centers, i + 1, list_nth(samples, j));
VectorArraySet(centers, i + 1, VectorArrayGet(samples, j));
centers->length++;
}
@@ -106,41 +106,25 @@ CompareVectors(const void *a, const void *b)
return vector_cmp_internal((Vector *) a, (Vector *) b);
}
/*
* Compare list vectors
*/
static int
#if PG_VERSION_NUM >= 130000
CompareListVectors(const ListCell *a, const ListCell *b)
#else
CompareListVectors(const void *a, const void *b)
#endif
{
Vector *va = lfirst((ListCell *) a);
Vector *vb = lfirst((ListCell *) b);
return CompareVectors(va, vb);
}
/*
* Quick approach if we have little data
*/
static void
QuickCenters(Relation index, List *samples, VectorArray centers)
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
{
int dimensions = centers->dim;
Oid collation = index->rd_indcollation[0];
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
/* Copy existing vectors while avoiding duplicates */
if (list_length(samples) > 0)
if (samples->length > 0)
{
list_sort(samples, CompareListVectors);
for (int i = 0; i < list_length(samples); i++)
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
for (int i = 0; i < samples->length; i++)
{
Vector *vec = list_nth(samples, i);
Vector *vec = VectorArrayGet(samples, i);
if (i == 0 || CompareVectors(vec, list_nth(samples, i - 1)) != 0)
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
{
VectorArraySet(centers, centers->length, vec);
centers->length++;
@@ -176,7 +160,7 @@ QuickCenters(Relation index, List *samples, VectorArray centers)
* https://www.aaai.org/Papers/ICML/2003/ICML03-022.pdf
*/
static void
ElkanKmeans(Relation index, List *samples, VectorArray centers)
ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
{
FmgrInfo *procinfo;
FmgrInfo *normprocinfo;
@@ -187,7 +171,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
int64 k;
int dimensions = centers->dim;
int numCenters = centers->maxlen;
int numSamples = list_length(samples);
int numSamples = samples->length;
VectorArray newCenters;
int *centerCounts;
int *closestCenters;
@@ -198,7 +182,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
float *newcdist;
/* Calculate allocation sizes */
Size samplesSize = 0;
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
Size centersSize = VECTOR_ARRAY_SIZE(centers->maxlen, centers->dim);
Size newCentersSize = VECTOR_ARRAY_SIZE(numCenters, dimensions);
Size centerCountsSize = sizeof(int) * numCenters;
@@ -342,7 +326,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
if (upperBound[j] <= halfcdist[closestCenters[j] * numCenters + k])
continue;
vec = list_nth(samples, j);
vec = VectorArrayGet(samples, j);
/* Step 3a */
if (rj)
@@ -393,7 +377,7 @@ ElkanKmeans(Relation index, List *samples, VectorArray centers)
{
int closestCenter;
vec = list_nth(samples, j);
vec = VectorArrayGet(samples, j);
closestCenter = closestCenters[j];
/* Increment sum and count of closest center */
@@ -530,9 +514,9 @@ CheckCenters(Relation index, VectorArray centers)
* We use spherical k-means for inner product and cosine
*/
void
IvfflatKmeans(Relation index, List *samples, VectorArray centers)
IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers)
{
if (list_length(samples) <= centers->maxlen)
if (samples->length <= centers->maxlen)
QuickCenters(index, samples, centers);
else
ElkanKmeans(index, samples, centers);