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https://github.com/pgvector/pgvector.git
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3 Commits
hnsw-datum
...
hnsw-paral
| Author | SHA1 | Date | |
|---|---|---|---|
|
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8714dd1410 | ||
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65e04acab6 | ||
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86d72d15c2 |
@@ -1,8 +1,3 @@
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||||
## 0.5.1 (2023-10-10)
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||||
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- Improved performance of HNSW index builds
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- Added check for MVCC-compliant snapshot for index scans
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## 0.5.0 (2023-08-28)
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- Added HNSW index type
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@@ -2,7 +2,7 @@
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"name": "vector",
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"abstract": "Open-source vector similarity search for Postgres",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"version": "0.5.1",
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"version": "0.5.0",
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"maintainer": [
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"Andrew Kane <andrew@ankane.org>"
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],
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@@ -20,7 +20,7 @@
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"vector": {
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"file": "sql/vector.sql",
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"docfile": "README.md",
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"version": "0.5.1",
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"version": "0.5.0",
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"abstract": "Open-source vector similarity search for Postgres"
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}
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},
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4
Makefile
4
Makefile
@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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@@ -8,7 +8,7 @@ HEADERS = src/vector.h
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TESTS = $(wildcard test/sql/*.sql)
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REGRESS = $(patsubst test/sql/%.sql,%,$(TESTS))
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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OPTFLAGS = -march=native
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@@ -1,11 +1,11 @@
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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REGRESS_OPTS = --inputdir=test --load-extension=$(EXTENSION)
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REGRESS_OPTS = --inputdir=test --load-extension=vector
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# For /arch flags
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# https://learn.microsoft.com/en-us/cpp/build/reference/arch-minimum-cpu-architecture
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14
README.md
14
README.md
@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
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```sh
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cd /tmp
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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make
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make install # may need sudo
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@@ -509,7 +509,7 @@ Then use `nmake` to build:
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```cmd
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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nmake /F Makefile.win
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nmake /F Makefile.win install
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@@ -530,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
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You can also build the image manually:
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```sh
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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```
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@@ -595,18 +595,12 @@ pgvector is available on [these providers](https://github.com/pgvector/pgvector/
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## Upgrading
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Install the latest version. Then in each database you want to upgrade, run:
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Install the latest version and run:
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```sql
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ALTER EXTENSION vector UPDATE;
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```
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You can check the version in the current database with:
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```sql
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SELECT extversion FROM pg_extension WHERE extname = 'vector';
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```
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## Upgrade Notes
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### 0.4.0
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@@ -1,2 +0,0 @@
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-- complain if script is sourced in psql, rather than via CREATE EXTENSION
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\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit
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11
src/hnsw.c
11
src/hnsw.c
@@ -33,12 +33,6 @@ HnswInit(void)
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HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
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#if PG_VERSION_NUM >= 130000
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,AccessExclusiveLock
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#endif
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);
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add_int_reloption(hnsw_relopt_kind, "dimensions", "Number of dimensions",
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HNSW_DEFAULT_DIMENSIONS, HNSW_MIN_DIMENSIONS, HNSW_MAX_DIMENSIONS
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#if PG_VERSION_NUM >= 130000
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,AccessExclusiveLock
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#endif
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);
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@@ -97,7 +91,7 @@ hnswcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
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MemSet(&costs, 0, sizeof(costs));
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index = index_open(path->indexinfo->indexoid, NoLock);
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HnswGetMetaPageInfo(index, &m, NULL);
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m = HnswGetM(index);
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index_close(index, NoLock);
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/* Approximate entry level */
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@@ -131,7 +125,6 @@ hnswoptions(Datum reloptions, bool validate)
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static const relopt_parse_elt tab[] = {
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{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
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{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
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{"dimensions", RELOPT_TYPE_INT, offsetof(HnswOptions, dimensions)},
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};
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#if PG_VERSION_NUM >= 130000
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@@ -203,7 +196,7 @@ hnswhandler(PG_FUNCTION_ARGS)
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amroutine->aminsert = hnswinsert;
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amroutine->ambulkdelete = hnswbulkdelete;
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amroutine->amvacuumcleanup = hnswvacuumcleanup;
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amroutine->amcanreturn = NULL;
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amroutine->amcanreturn = NULL; /* tuple not included in heapsort */
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amroutine->amcostestimate = hnswcostestimate;
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amroutine->amoptions = hnswoptions;
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amroutine->amproperty = NULL; /* TODO AMPROP_DISTANCE_ORDERABLE */
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75
src/hnsw.h
75
src/hnsw.h
@@ -4,6 +4,7 @@
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#include "postgres.h"
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#include "access/generic_xlog.h"
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#include "access/parallel.h"
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#include "access/reloptions.h"
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#include "nodes/execnodes.h"
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#include "port.h" /* for random() */
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@@ -14,6 +15,10 @@
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#error "Requires PostgreSQL 11+"
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#endif
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#if PG_VERSION_NUM < 120000
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#include "access/relscan.h"
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#endif
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#define HNSW_MAX_DIM 2000
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/* Support functions */
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@@ -42,9 +47,6 @@
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#define HNSW_DEFAULT_EF_SEARCH 40
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#define HNSW_MIN_EF_SEARCH 1
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#define HNSW_MAX_EF_SEARCH 1000
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#define HNSW_DEFAULT_DIMENSIONS -1
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#define HNSW_MIN_DIMENSIONS 1
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#define HNSW_MAX_DIMENSIONS HNSW_MAX_DIM
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/* Tuple types */
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#define HNSW_ELEMENT_TUPLE_TYPE 1
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@@ -60,9 +62,7 @@
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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#define PROGRESS_HNSW_PHASE_LOAD 2
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#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
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#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
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@@ -106,7 +106,7 @@ typedef struct HnswElementData
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OffsetNumber offno;
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OffsetNumber neighborOffno;
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BlockNumber neighborPage;
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Datum value;
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Vector *vec;
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} HnswElementData;
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typedef HnswElementData * HnswElement;
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@@ -115,13 +115,11 @@ typedef struct HnswCandidate
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{
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HnswElement element;
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float distance;
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bool closer;
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} HnswCandidate;
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typedef struct HnswNeighborArray
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{
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int length;
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bool closerSet;
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HnswCandidate *items;
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} HnswNeighborArray;
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@@ -137,9 +135,51 @@ typedef struct HnswOptions
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int32 vl_len_; /* varlena header (do not touch directly!) */
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int m; /* number of connections */
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int efConstruction; /* size of dynamic candidate list */
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int dimensions;
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} HnswOptions;
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typedef struct HnswSpool
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{
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Relation heap;
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Relation index;
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} HnswSpool;
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typedef struct HnswShared
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{
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/* Immutable state */
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Oid heaprelid;
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Oid indexrelid;
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bool isconcurrent;
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int scantuplesortstates;
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/* Worker progress */
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ConditionVariable workersdonecv;
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/* Mutex for mutable state */
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slock_t mutex;
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/* Mutable state */
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int nparticipantsdone;
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double reltuples;
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double indtuples;
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#if PG_VERSION_NUM < 120000
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ParallelHeapScanDescData heapdesc; /* must come last */
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#endif
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} HnswShared;
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|
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#if PG_VERSION_NUM >= 120000
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#define ParallelTableScanFromHnswShared(shared) \
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(ParallelTableScanDesc) ((char *) (shared) + BUFFERALIGN(sizeof(HnswShared)))
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#endif
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typedef struct HnswLeader
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{
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ParallelContext *pcxt;
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int nparticipanttuplesorts;
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HnswShared *hnswshared;
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Snapshot snapshot;
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} HnswLeader;
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|
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typedef struct HnswBuildState
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{
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/* Info */
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@@ -173,6 +213,9 @@ typedef struct HnswBuildState
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/* Memory */
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MemoryContext tmpCtx;
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/* Parallel builds */
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HnswLeader *hnswleader;
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} HnswBuildState;
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|
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typedef struct HnswMetaPageData
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@@ -208,7 +251,7 @@ typedef struct HnswElementTupleData
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ItemPointerData heaptids[HNSW_HEAPTIDS];
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ItemPointerData neighbortid;
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uint16 unused2;
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char value[FLEXIBLE_ARRAY_MEMBER];
|
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Vector vec;
|
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} HnswElementTupleData;
|
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|
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typedef HnswElementTupleData * HnswElementTuple;
|
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@@ -226,6 +269,7 @@ typedef HnswNeighborTupleData * HnswNeighborTuple;
|
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typedef struct HnswScanOpaqueData
|
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{
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bool first;
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Buffer buf;
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List *w;
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MemoryContext tmpCtx;
|
||||
|
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@@ -266,17 +310,15 @@ typedef struct HnswVacuumState
|
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/* Methods */
|
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int HnswGetM(Relation index);
|
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int HnswGetEfConstruction(Relation index);
|
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int HnswGetDimensions(Relation index);
|
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FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
|
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FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum);
|
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bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
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void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
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Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
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void HnswInitPage(Buffer buf, Page page);
|
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void HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state);
|
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void HnswInit(void);
|
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List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
|
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List *HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool inserting, HnswElement skipElement);
|
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HnswElement HnswGetEntryPoint(Relation index);
|
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void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
|
||||
HnswElement HnswInitElement(ItemPointer tid, int m, double ml, int maxLevel);
|
||||
void HnswFreeElement(HnswElement element);
|
||||
HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
|
||||
@@ -293,7 +335,8 @@ void HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool
|
||||
void HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
|
||||
void HnswSetElementTuple(HnswElementTuple etup, HnswElement element);
|
||||
void HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
|
||||
void HnswLoadNeighbors(HnswElement element, Relation index, int m);
|
||||
void HnswLoadNeighbors(HnswElement element, Relation index);
|
||||
PGDLLEXPORT void HnswParallelBuildMain(dsm_segment *seg, shm_toc *toc);
|
||||
|
||||
/* Index access methods */
|
||||
IndexBuildResult *hnswbuild(Relation heap, Relation index, IndexInfo *indexInfo);
|
||||
|
||||
424
src/hnswbuild.c
424
src/hnswbuild.c
@@ -2,13 +2,15 @@
|
||||
|
||||
#include <math.h>
|
||||
|
||||
#include "access/parallel.h"
|
||||
#include "access/xact.h"
|
||||
#include "catalog/index.h"
|
||||
#include "hnsw.h"
|
||||
#include "miscadmin.h"
|
||||
#include "lib/pairingheap.h"
|
||||
#include "nodes/pg_list.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "tcop/tcopprot.h"
|
||||
#include "utils/memutils.h"
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
@@ -36,6 +38,23 @@
|
||||
#define UpdateProgress(index, val) ((void)val)
|
||||
#endif
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
#include "utils/backend_status.h"
|
||||
#include "utils/wait_event.h"
|
||||
#endif
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
#include "access/table.h"
|
||||
#include "optimizer/optimizer.h"
|
||||
#else
|
||||
#include "access/heapam.h"
|
||||
#include "optimizer/planner.h"
|
||||
#include "pgstat.h"
|
||||
#endif
|
||||
|
||||
#define PARALLEL_KEY_HNSW_SHARED UINT64CONST(0xA000000000000001)
|
||||
#define PARALLEL_KEY_QUERY_TEXT UINT64CONST(0xA000000000000002)
|
||||
|
||||
/*
|
||||
* Create the metapage
|
||||
*/
|
||||
@@ -82,6 +101,7 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
|
||||
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(*buf);
|
||||
GenericXLogFinish(*state);
|
||||
UnlockReleaseBuffer(*buf);
|
||||
|
||||
@@ -106,6 +126,8 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
{
|
||||
Relation index = buildstate->index;
|
||||
ForkNumber forkNum = buildstate->forkNum;
|
||||
int dimensions = buildstate->dimensions;
|
||||
Size etupSize;
|
||||
Size maxSize;
|
||||
HnswElementTuple etup;
|
||||
HnswNeighborTuple ntup;
|
||||
@@ -116,11 +138,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
ListCell *lc;
|
||||
|
||||
/* Calculate sizes */
|
||||
maxSize = HNSW_MAX_SIZE;
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
|
||||
/* Allocate once */
|
||||
etup = palloc0(BLCKSZ);
|
||||
ntup = palloc0(BLCKSZ);
|
||||
etup = palloc0(etupSize);
|
||||
ntup = palloc0(maxSize);
|
||||
|
||||
/* Prepare first page */
|
||||
buf = HnswNewBuffer(index, forkNum);
|
||||
@@ -131,14 +154,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
foreach(lc, buildstate->elements)
|
||||
{
|
||||
HnswElement element = lfirst(lc);
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Size combinedSize;
|
||||
|
||||
HnswSetElementTuple(etup, element);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
|
||||
@@ -178,6 +199,7 @@ CreateElementPages(HnswBuildState * buildstate)
|
||||
insertPage = BufferGetBlockNumber(buf);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -225,6 +247,7 @@ CreateNeighborPages(HnswBuildState * buildstate)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -273,15 +296,18 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
|
||||
int m = buildstate->m;
|
||||
|
||||
/* Detoast once for all calls */
|
||||
element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Normalize if needed */
|
||||
if (buildstate->normprocinfo != NULL)
|
||||
{
|
||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
|
||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
|
||||
return false;
|
||||
}
|
||||
|
||||
/* Copy value to element so accessible outside of memory context */
|
||||
memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Insert element in graph */
|
||||
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
||||
|
||||
@@ -345,6 +371,7 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
|
||||
/* TODO Fix progress for parallel builds */
|
||||
if (HnswInsertTuple(buildstate->index, values, isnull, tid, buildstate->heap))
|
||||
UpdateProgress(PROGRESS_CREATEIDX_TUPLES_DONE, ++buildstate->indtuples);
|
||||
|
||||
@@ -357,6 +384,7 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Allocate necessary memory outside of memory context */
|
||||
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
||||
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Use memory context since detoast can allocate */
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
@@ -364,8 +392,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
/* Insert tuple */
|
||||
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
||||
|
||||
/* Switch memory context */
|
||||
/* Reset memory context */
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
|
||||
/* Add outside memory context */
|
||||
if (dup != NULL)
|
||||
@@ -373,18 +402,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Add to buildstate or free */
|
||||
if (inserted)
|
||||
{
|
||||
element->value = datumCopy(element->value, false, -1);
|
||||
buildstate->elements = lappend(buildstate->elements, element);
|
||||
}
|
||||
else
|
||||
{
|
||||
element->value = PointerGetDatum(NULL);
|
||||
HnswFreeElement(element);
|
||||
}
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -399,7 +419,6 @@ HnswGetMaxInMemoryElements(int m, double ml, int dimensions)
|
||||
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
|
||||
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
|
||||
elementSize += sizeof(ItemPointerData);
|
||||
/* TODO Handle non-vector types */
|
||||
elementSize += VECTOR_SIZE(dimensions);
|
||||
return (maintenance_work_mem * 1024L) / elementSize;
|
||||
}
|
||||
@@ -417,10 +436,7 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
||||
|
||||
buildstate->m = HnswGetM(index);
|
||||
buildstate->efConstruction = HnswGetEfConstruction(index);
|
||||
buildstate->dimensions = HnswGetDimensions(index);
|
||||
|
||||
if (buildstate->dimensions < 0)
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
|
||||
/* Require column to have dimensions to be indexed */
|
||||
if (buildstate->dimensions < 0)
|
||||
@@ -453,6 +469,8 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
||||
buildstate->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
||||
"Hnsw build temporary context",
|
||||
ALLOCSET_DEFAULT_SIZES);
|
||||
|
||||
buildstate->hnswleader = NULL;
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -465,21 +483,373 @@ FreeBuildState(HnswBuildState * buildstate)
|
||||
MemoryContextDelete(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
* Within leader, wait for end of heap scan
|
||||
*/
|
||||
static double
|
||||
ParallelHeapScan(HnswBuildState * buildstate)
|
||||
{
|
||||
HnswShared *hnswshared = buildstate->hnswleader->hnswshared;
|
||||
int nparticipanttuplesorts;
|
||||
double reltuples;
|
||||
|
||||
nparticipanttuplesorts = buildstate->hnswleader->nparticipanttuplesorts;
|
||||
for (;;)
|
||||
{
|
||||
SpinLockAcquire(&hnswshared->mutex);
|
||||
if (hnswshared->nparticipantsdone == nparticipanttuplesorts)
|
||||
{
|
||||
buildstate->indtuples = hnswshared->indtuples;
|
||||
reltuples = hnswshared->reltuples;
|
||||
SpinLockRelease(&hnswshared->mutex);
|
||||
break;
|
||||
}
|
||||
SpinLockRelease(&hnswshared->mutex);
|
||||
|
||||
ConditionVariableSleep(&hnswshared->workersdonecv,
|
||||
WAIT_EVENT_PARALLEL_CREATE_INDEX_SCAN);
|
||||
}
|
||||
|
||||
ConditionVariableCancelSleep();
|
||||
|
||||
return reltuples;
|
||||
}
|
||||
|
||||
/*
|
||||
* Perform a worker's portion of a parallel insert
|
||||
*/
|
||||
static void
|
||||
HnswParallelScanAndInsert(HnswSpool * hnswspool, HnswShared * hnswshared, bool progress)
|
||||
{
|
||||
HnswBuildState buildstate;
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
TableScanDesc scan;
|
||||
#else
|
||||
HeapScanDesc scan;
|
||||
#endif
|
||||
double reltuples;
|
||||
IndexInfo *indexInfo;
|
||||
|
||||
/* Join parallel scan */
|
||||
indexInfo = BuildIndexInfo(hnswspool->index);
|
||||
indexInfo->ii_Concurrent = hnswshared->isconcurrent;
|
||||
InitBuildState(&buildstate, hnswspool->heap, hnswspool->index, indexInfo, MAIN_FORKNUM);
|
||||
/* TODO Support in-memory builds */
|
||||
buildstate.maxInMemoryElements = 0;
|
||||
buildstate.flushed = true;
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan = table_beginscan_parallel(hnswspool->heap,
|
||||
ParallelTableScanFromHnswShared(hnswshared));
|
||||
reltuples = table_index_build_scan(hnswspool->heap, hnswspool->index, indexInfo,
|
||||
true, progress, BuildCallback,
|
||||
(void *) &buildstate, scan);
|
||||
#else
|
||||
scan = heap_beginscan_parallel(hnswspool->heap, &hnswshared->heapdesc);
|
||||
reltuples = IndexBuildHeapScan(hnswspool->heap, hnswspool->index, indexInfo,
|
||||
true, BuildCallback,
|
||||
(void *) &buildstate, scan);
|
||||
#endif
|
||||
|
||||
/* Record statistics */
|
||||
SpinLockAcquire(&hnswshared->mutex);
|
||||
hnswshared->nparticipantsdone++;
|
||||
hnswshared->reltuples += reltuples;
|
||||
hnswshared->indtuples += buildstate.indtuples;
|
||||
SpinLockRelease(&hnswshared->mutex);
|
||||
|
||||
/* Log statistics */
|
||||
if (progress)
|
||||
ereport(DEBUG1, (errmsg("leader processed " INT64_FORMAT " tuples", (int64) reltuples)));
|
||||
else
|
||||
ereport(DEBUG1, (errmsg("worker processed " INT64_FORMAT " tuples", (int64) reltuples)));
|
||||
|
||||
/* Notify leader */
|
||||
ConditionVariableSignal(&hnswshared->workersdonecv);
|
||||
|
||||
FreeBuildState(&buildstate);
|
||||
}
|
||||
|
||||
/*
|
||||
* Perform work within a launched parallel process
|
||||
*/
|
||||
void
|
||||
HnswParallelBuildMain(dsm_segment *seg, shm_toc *toc)
|
||||
{
|
||||
char *sharedquery;
|
||||
HnswSpool *hnswspool;
|
||||
HnswShared *hnswshared;
|
||||
Relation heapRel;
|
||||
Relation indexRel;
|
||||
LOCKMODE heapLockmode;
|
||||
LOCKMODE indexLockmode;
|
||||
|
||||
/* Set debug_query_string for individual workers first */
|
||||
sharedquery = shm_toc_lookup(toc, PARALLEL_KEY_QUERY_TEXT, true);
|
||||
debug_query_string = sharedquery;
|
||||
|
||||
/* Report the query string from leader */
|
||||
pgstat_report_activity(STATE_RUNNING, debug_query_string);
|
||||
|
||||
/* Look up shared state */
|
||||
hnswshared = shm_toc_lookup(toc, PARALLEL_KEY_HNSW_SHARED, false);
|
||||
|
||||
/* Open relations using lock modes known to be obtained by index.c */
|
||||
if (!hnswshared->isconcurrent)
|
||||
{
|
||||
heapLockmode = ShareLock;
|
||||
indexLockmode = AccessExclusiveLock;
|
||||
}
|
||||
else
|
||||
{
|
||||
heapLockmode = ShareUpdateExclusiveLock;
|
||||
indexLockmode = RowExclusiveLock;
|
||||
}
|
||||
|
||||
/* Open relations within worker */
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
heapRel = table_open(hnswshared->heaprelid, heapLockmode);
|
||||
#else
|
||||
heapRel = heap_open(hnswshared->heaprelid, heapLockmode);
|
||||
#endif
|
||||
indexRel = index_open(hnswshared->indexrelid, indexLockmode);
|
||||
|
||||
/* Initialize worker's own spool */
|
||||
hnswspool = (HnswSpool *) palloc0(sizeof(HnswSpool));
|
||||
hnswspool->heap = heapRel;
|
||||
hnswspool->index = indexRel;
|
||||
|
||||
/* Perform inserts */
|
||||
HnswParallelScanAndInsert(hnswspool, hnswshared, false);
|
||||
|
||||
/* Close relations within worker */
|
||||
index_close(indexRel, indexLockmode);
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
table_close(heapRel, heapLockmode);
|
||||
#else
|
||||
heap_close(heapRel, heapLockmode);
|
||||
#endif
|
||||
}
|
||||
|
||||
/*
|
||||
* End parallel build
|
||||
*/
|
||||
static void
|
||||
HnswEndParallel(HnswLeader * hnswleader)
|
||||
{
|
||||
/* Shutdown worker processes */
|
||||
WaitForParallelWorkersToFinish(hnswleader->pcxt);
|
||||
|
||||
/* Free last reference to MVCC snapshot, if one was used */
|
||||
if (IsMVCCSnapshot(hnswleader->snapshot))
|
||||
UnregisterSnapshot(hnswleader->snapshot);
|
||||
DestroyParallelContext(hnswleader->pcxt);
|
||||
ExitParallelMode();
|
||||
}
|
||||
|
||||
/*
|
||||
* Return size of shared memory required for parallel index build
|
||||
*/
|
||||
static Size
|
||||
ParallelEstimateShared(Relation heap, Snapshot snapshot)
|
||||
{
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
return add_size(BUFFERALIGN(sizeof(HnswShared)), table_parallelscan_estimate(heap, snapshot));
|
||||
#else
|
||||
if (!IsMVCCSnapshot(snapshot))
|
||||
{
|
||||
Assert(snapshot == SnapshotAny);
|
||||
return sizeof(HnswShared);
|
||||
}
|
||||
|
||||
return add_size(offsetof(HnswShared, heapdesc) +
|
||||
offsetof(ParallelHeapScanDescData, phs_snapshot_data),
|
||||
EstimateSnapshotSpace(snapshot));
|
||||
#endif
|
||||
}
|
||||
|
||||
/*
|
||||
* Within leader, participate as a parallel worker
|
||||
*/
|
||||
static void
|
||||
HnswLeaderParticipateAsWorker(HnswBuildState * buildstate)
|
||||
{
|
||||
HnswLeader *hnswleader = buildstate->hnswleader;
|
||||
HnswSpool *leaderworker;
|
||||
|
||||
/* Allocate memory and initialize private spool */
|
||||
leaderworker = (HnswSpool *) palloc0(sizeof(HnswSpool));
|
||||
leaderworker->heap = buildstate->heap;
|
||||
leaderworker->index = buildstate->index;
|
||||
|
||||
/* Perform work common to all participants */
|
||||
HnswParallelScanAndInsert(leaderworker, hnswleader->hnswshared, true);
|
||||
}
|
||||
|
||||
/*
|
||||
* Begin parallel build
|
||||
*/
|
||||
static void
|
||||
HnswBeginParallel(HnswBuildState * buildstate, bool isconcurrent, int request)
|
||||
{
|
||||
ParallelContext *pcxt;
|
||||
int scantuplesortstates;
|
||||
Snapshot snapshot;
|
||||
Size esthnswshared;
|
||||
HnswShared *hnswshared;
|
||||
HnswLeader *hnswleader = (HnswLeader *) palloc0(sizeof(HnswLeader));
|
||||
bool leaderparticipates = true;
|
||||
int querylen;
|
||||
|
||||
#ifdef DISABLE_LEADER_PARTICIPATION
|
||||
leaderparticipates = false;
|
||||
#endif
|
||||
|
||||
/* Enter parallel mode and create context */
|
||||
EnterParallelMode();
|
||||
Assert(request > 0);
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
pcxt = CreateParallelContext("vector", "HnswParallelBuildMain", request);
|
||||
#else
|
||||
pcxt = CreateParallelContext("vector", "HnswParallelBuildMain", request, true);
|
||||
#endif
|
||||
|
||||
scantuplesortstates = leaderparticipates ? request + 1 : request;
|
||||
|
||||
/* Get snapshot for table scan */
|
||||
if (!isconcurrent)
|
||||
snapshot = SnapshotAny;
|
||||
else
|
||||
snapshot = RegisterSnapshot(GetTransactionSnapshot());
|
||||
|
||||
/* Estimate size of workspaces */
|
||||
esthnswshared = ParallelEstimateShared(buildstate->heap, snapshot);
|
||||
shm_toc_estimate_chunk(&pcxt->estimator, esthnswshared);
|
||||
shm_toc_estimate_keys(&pcxt->estimator, 1);
|
||||
|
||||
/* Finally, estimate PARALLEL_KEY_QUERY_TEXT space */
|
||||
if (debug_query_string)
|
||||
{
|
||||
querylen = strlen(debug_query_string);
|
||||
shm_toc_estimate_chunk(&pcxt->estimator, querylen + 1);
|
||||
shm_toc_estimate_keys(&pcxt->estimator, 1);
|
||||
}
|
||||
else
|
||||
querylen = 0; /* keep compiler quiet */
|
||||
|
||||
/* Everyone's had a chance to ask for space, so now create the DSM */
|
||||
InitializeParallelDSM(pcxt);
|
||||
|
||||
/* If no DSM segment was available, back out (do serial build) */
|
||||
if (pcxt->seg == NULL)
|
||||
{
|
||||
if (IsMVCCSnapshot(snapshot))
|
||||
UnregisterSnapshot(snapshot);
|
||||
DestroyParallelContext(pcxt);
|
||||
ExitParallelMode();
|
||||
return;
|
||||
}
|
||||
|
||||
/* Store shared build state, for which we reserved space */
|
||||
hnswshared = (HnswShared *) shm_toc_allocate(pcxt->toc, esthnswshared);
|
||||
/* Initialize immutable state */
|
||||
hnswshared->heaprelid = RelationGetRelid(buildstate->heap);
|
||||
hnswshared->indexrelid = RelationGetRelid(buildstate->index);
|
||||
hnswshared->isconcurrent = isconcurrent;
|
||||
hnswshared->scantuplesortstates = scantuplesortstates;
|
||||
ConditionVariableInit(&hnswshared->workersdonecv);
|
||||
SpinLockInit(&hnswshared->mutex);
|
||||
/* Initialize mutable state */
|
||||
hnswshared->nparticipantsdone = 0;
|
||||
hnswshared->reltuples = 0;
|
||||
hnswshared->indtuples = 0;
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
table_parallelscan_initialize(buildstate->heap,
|
||||
ParallelTableScanFromHnswShared(hnswshared),
|
||||
snapshot);
|
||||
#else
|
||||
heap_parallelscan_initialize(&hnswshared->heapdesc, buildstate->heap, snapshot);
|
||||
#endif
|
||||
|
||||
shm_toc_insert(pcxt->toc, PARALLEL_KEY_HNSW_SHARED, hnswshared);
|
||||
|
||||
/* Store query string for workers */
|
||||
if (debug_query_string)
|
||||
{
|
||||
char *sharedquery;
|
||||
|
||||
sharedquery = (char *) shm_toc_allocate(pcxt->toc, querylen + 1);
|
||||
memcpy(sharedquery, debug_query_string, querylen + 1);
|
||||
shm_toc_insert(pcxt->toc, PARALLEL_KEY_QUERY_TEXT, sharedquery);
|
||||
}
|
||||
|
||||
/* Launch workers, saving status for leader/caller */
|
||||
LaunchParallelWorkers(pcxt);
|
||||
hnswleader->pcxt = pcxt;
|
||||
hnswleader->nparticipanttuplesorts = pcxt->nworkers_launched;
|
||||
if (leaderparticipates)
|
||||
hnswleader->nparticipanttuplesorts++;
|
||||
hnswleader->hnswshared = hnswshared;
|
||||
hnswleader->snapshot = snapshot;
|
||||
|
||||
/* If no workers were successfully launched, back out (do serial build) */
|
||||
if (pcxt->nworkers_launched == 0)
|
||||
{
|
||||
HnswEndParallel(hnswleader);
|
||||
return;
|
||||
}
|
||||
|
||||
/* Log participants */
|
||||
ereport(DEBUG1, (errmsg("using %d parallel workers", pcxt->nworkers_launched)));
|
||||
|
||||
/* Save leader state now that it's clear build will be parallel */
|
||||
buildstate->hnswleader = hnswleader;
|
||||
|
||||
/* Join heap scan ourselves */
|
||||
if (leaderparticipates)
|
||||
HnswLeaderParticipateAsWorker(buildstate);
|
||||
|
||||
/* Wait for all launched workers */
|
||||
WaitForParallelWorkersToAttach(pcxt);
|
||||
}
|
||||
|
||||
/*
|
||||
* Build graph
|
||||
*/
|
||||
static void
|
||||
BuildGraph(HnswBuildState * buildstate, ForkNumber forkNum)
|
||||
{
|
||||
int parallel_workers = 0;
|
||||
|
||||
UpdateProgress(PROGRESS_CREATEIDX_SUBPHASE, PROGRESS_HNSW_PHASE_LOAD);
|
||||
|
||||
/* Calculate parallel workers */
|
||||
parallel_workers = plan_create_index_workers(RelationGetRelid(buildstate->heap), RelationGetRelid(buildstate->index));
|
||||
|
||||
/* Attempt to launch parallel worker scan when required */
|
||||
if (parallel_workers > 0)
|
||||
{
|
||||
/* TODO Support in-memory builds */
|
||||
FlushPages(buildstate);
|
||||
HnswBeginParallel(buildstate, buildstate->indexInfo->ii_Concurrent, parallel_workers);
|
||||
}
|
||||
|
||||
/* Add tuples to sort */
|
||||
if (buildstate->hnswleader)
|
||||
buildstate->reltuples = ParallelHeapScan(buildstate);
|
||||
else
|
||||
{
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
buildstate->reltuples = table_index_build_scan(buildstate->heap, buildstate->index, buildstate->indexInfo,
|
||||
true, true, BuildCallback, (void *) buildstate, NULL);
|
||||
buildstate->reltuples = table_index_build_scan(buildstate->heap, buildstate->index, buildstate->indexInfo,
|
||||
true, true, BuildCallback, (void *) buildstate, NULL);
|
||||
#else
|
||||
buildstate->reltuples = IndexBuildHeapScan(buildstate->heap, buildstate->index, buildstate->indexInfo,
|
||||
true, BuildCallback, (void *) buildstate, NULL);
|
||||
buildstate->reltuples = IndexBuildHeapScan(buildstate->heap, buildstate->index, buildstate->indexInfo,
|
||||
true, BuildCallback, (void *) buildstate, NULL);
|
||||
#endif
|
||||
}
|
||||
|
||||
/* End parallel build */
|
||||
if (buildstate->hnswleader)
|
||||
HnswEndParallel(buildstate->hnswleader);
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
@@ -123,6 +123,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
Size minCombinedSize;
|
||||
HnswElementTuple etup;
|
||||
BlockNumber currentPage = insertPage;
|
||||
int dimensions = e->vec->dim;
|
||||
HnswNeighborTuple ntup;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
@@ -131,10 +132,10 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
maxSize = HNSW_MAX_SIZE;
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
||||
|
||||
/* Prepare element tuple */
|
||||
@@ -201,6 +202,8 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
@@ -267,6 +270,9 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
}
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
if (nbuf != buf)
|
||||
@@ -323,7 +329,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
||||
|
||||
/* Get latest neighbors since they may have changed */
|
||||
/* Do not lock yet since selecting neighbors can take time */
|
||||
HnswLoadNeighbors(hc->element, index, m);
|
||||
HnswLoadNeighbors(hc->element, index);
|
||||
|
||||
/*
|
||||
* Could improve performance for vacuuming by checking neighbors
|
||||
@@ -385,6 +391,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
@@ -404,7 +411,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
||||
HnswElementTuple etup;
|
||||
int i;
|
||||
|
||||
@@ -438,6 +445,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -484,8 +492,9 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
FmgrInfo *normprocinfo;
|
||||
HnswElement entryPoint;
|
||||
HnswElement element;
|
||||
int m;
|
||||
int m = HnswGetM(index);
|
||||
int efConstruction = HnswGetEfConstruction(index);
|
||||
double ml = HnswGetMl(m);
|
||||
FmgrInfo *procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
HnswElement dup;
|
||||
@@ -502,6 +511,10 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
return false;
|
||||
}
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, ml, HnswGetMaxLevel(m));
|
||||
element->vec = DatumGetVector(value);
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight inserts
|
||||
* before repairing graph. Use a page lock so it does not interfere with
|
||||
@@ -509,12 +522,8 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
*/
|
||||
LockPage(index, HNSW_UPDATE_LOCK, lockmode);
|
||||
|
||||
/* Get m and entry point */
|
||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||
element->value = value;
|
||||
/* Get entry point */
|
||||
entryPoint = HnswGetEntryPoint(index);
|
||||
|
||||
/* Prevent concurrent inserts when likely updating entry point */
|
||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||
|
||||
@@ -19,11 +19,7 @@ GetScanItems(IndexScanDesc scan, Datum q)
|
||||
Oid collation = so->collation;
|
||||
List *ep;
|
||||
List *w;
|
||||
int m;
|
||||
HnswElement entryPoint;
|
||||
|
||||
/* Get m and entry point */
|
||||
HnswGetMetaPageInfo(index, &m, &entryPoint);
|
||||
HnswElement entryPoint = HnswGetEntryPoint(index);
|
||||
|
||||
if (entryPoint == NULL)
|
||||
return NIL;
|
||||
@@ -32,11 +28,11 @@ GetScanItems(IndexScanDesc scan, Datum q)
|
||||
|
||||
for (int lc = entryPoint->level; lc >= 1; lc--)
|
||||
{
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, false, NULL);
|
||||
ep = w;
|
||||
}
|
||||
|
||||
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
|
||||
return HnswSearchLayer(q, ep, hnsw_ef_search, 0, index, procinfo, collation, false, NULL);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -62,33 +58,6 @@ GetDimensions(Relation index)
|
||||
return dimensions;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get scan value
|
||||
*/
|
||||
static Datum
|
||||
GetScanValue(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
Datum value;
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
|
||||
/* Value should not be compressed or toasted */
|
||||
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
||||
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
||||
|
||||
/* Fine if normalization fails */
|
||||
if (so->normprocinfo != NULL)
|
||||
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
||||
}
|
||||
|
||||
return value;
|
||||
}
|
||||
|
||||
/*
|
||||
* Prepare for an index scan
|
||||
*/
|
||||
@@ -101,6 +70,7 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||
|
||||
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
||||
so->buf = InvalidBuffer;
|
||||
so->first = true;
|
||||
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
||||
"Hnsw scan temporary context",
|
||||
@@ -160,13 +130,20 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (scan->orderByData == NULL)
|
||||
elog(ERROR, "cannot scan hnsw index without order");
|
||||
|
||||
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
|
||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
|
||||
/* Get scan value */
|
||||
value = GetScanValue(scan);
|
||||
/* Value should not be compressed or toasted */
|
||||
Assert(!VARATT_IS_COMPRESSED(DatumGetPointer(value)));
|
||||
Assert(!VARATT_IS_EXTENDED(DatumGetPointer(value)));
|
||||
|
||||
/* Fine if normalization fails */
|
||||
if (so->normprocinfo != NULL)
|
||||
HnswNormValue(so->normprocinfo, so->collation, &value, NULL);
|
||||
}
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
@@ -185,27 +162,41 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
while (list_length(so->w) > 0)
|
||||
{
|
||||
HnswCandidate *hc = llast(so->w);
|
||||
ItemPointer heaptid;
|
||||
ItemPointer tid;
|
||||
BlockNumber indexblkno;
|
||||
|
||||
/* Move to next element if no valid heap TIDs */
|
||||
/* Move to next element if no valid heap tids */
|
||||
if (list_length(hc->element->heaptids) == 0)
|
||||
{
|
||||
so->w = list_delete_last(so->w);
|
||||
continue;
|
||||
}
|
||||
|
||||
heaptid = llast(hc->element->heaptids);
|
||||
tid = llast(hc->element->heaptids);
|
||||
indexblkno = hc->element->blkno;
|
||||
|
||||
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
||||
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan->xs_heaptid = *heaptid;
|
||||
scan->xs_heaptid = *tid;
|
||||
#else
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
scan->xs_ctup.t_self = *tid;
|
||||
#endif
|
||||
|
||||
/* Unpin buffer */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
/*
|
||||
* An index scan must maintain a pin on the index page holding the
|
||||
* item last returned by amgettuple
|
||||
*
|
||||
* https://www.postgresql.org/docs/current/index-locking.html
|
||||
*/
|
||||
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||
|
||||
scan->xs_recheckorderby = false;
|
||||
return true;
|
||||
}
|
||||
@@ -222,6 +213,10 @@ hnswendscan(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
|
||||
/* Release pin */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
MemoryContextDelete(so->tmpCtx);
|
||||
|
||||
pfree(so);
|
||||
|
||||
237
src/hnswutils.c
237
src/hnswutils.c
@@ -4,7 +4,6 @@
|
||||
|
||||
#include "hnsw.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "vector.h"
|
||||
|
||||
/*
|
||||
@@ -35,30 +34,16 @@ HnswGetEfConstruction(Relation index)
|
||||
return HNSW_DEFAULT_EF_CONSTRUCTION;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the number of dimensions in the index
|
||||
*/
|
||||
int
|
||||
HnswGetDimensions(Relation index)
|
||||
{
|
||||
HnswOptions *opts = (HnswOptions *) index->rd_options;
|
||||
|
||||
if (opts)
|
||||
return opts->dimensions;
|
||||
|
||||
return HNSW_DEFAULT_DIMENSIONS;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get proc
|
||||
*/
|
||||
FmgrInfo *
|
||||
HnswOptionalProcInfo(Relation index, uint16 procnum)
|
||||
HnswOptionalProcInfo(Relation rel, uint16 procnum)
|
||||
{
|
||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||
return NULL;
|
||||
|
||||
return index_getprocinfo(index, 1, procnum);
|
||||
return index_getprocinfo(rel, 1, procnum);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -132,6 +117,7 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
||||
void
|
||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -154,21 +140,9 @@ HnswInitNeighbors(HnswElement element, int m)
|
||||
a = &element->neighbors[lc];
|
||||
a->length = 0;
|
||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||
a->closerSet = false;
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
* Free neighbors
|
||||
*/
|
||||
static void
|
||||
HnswFreeNeighbors(HnswElement element)
|
||||
{
|
||||
for (int lc = 0; lc <= element->level; lc++)
|
||||
pfree(element->neighbors[lc].items);
|
||||
pfree(element->neighbors);
|
||||
}
|
||||
|
||||
/*
|
||||
* Allocate an element
|
||||
*/
|
||||
@@ -200,10 +174,11 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
|
||||
void
|
||||
HnswFreeElement(HnswElement element)
|
||||
{
|
||||
HnswFreeNeighbors(element);
|
||||
list_free_deep(element->heaptids);
|
||||
if (DatumGetPointer(element->value))
|
||||
pfree(DatumGetPointer(element->value));
|
||||
for (int lc = 0; lc <= element->level; lc++)
|
||||
pfree(element->neighbors[lc].items);
|
||||
pfree(element->neighbors);
|
||||
pfree(element->vec);
|
||||
pfree(element);
|
||||
}
|
||||
|
||||
@@ -230,48 +205,30 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
||||
element->blkno = blkno;
|
||||
element->offno = offno;
|
||||
element->neighbors = NULL;
|
||||
element->value = PointerGetDatum(NULL);
|
||||
element->vec = NULL;
|
||||
return element;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the metapage info
|
||||
*/
|
||||
void
|
||||
HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
HnswMetaPage metap;
|
||||
|
||||
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = HnswPageGetMeta(page);
|
||||
|
||||
if (m != NULL)
|
||||
*m = metap->m;
|
||||
|
||||
if (entryPoint != NULL)
|
||||
{
|
||||
if (BlockNumberIsValid(metap->entryBlkno))
|
||||
*entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
||||
else
|
||||
*entryPoint = NULL;
|
||||
}
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the entry point
|
||||
*/
|
||||
HnswElement
|
||||
HnswGetEntryPoint(Relation index)
|
||||
{
|
||||
HnswElement entryPoint;
|
||||
Buffer buf;
|
||||
Page page;
|
||||
HnswMetaPage metap;
|
||||
HnswElement entryPoint = NULL;
|
||||
|
||||
HnswGetMetaPageInfo(index, NULL, &entryPoint);
|
||||
buf = ReadBuffer(index, HNSW_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = HnswPageGetMeta(page);
|
||||
|
||||
if (BlockNumberIsValid(metap->entryBlkno))
|
||||
entryPoint = HnswInitElementFromBlock(metap->entryBlkno, metap->entryOffno);
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
return entryPoint;
|
||||
}
|
||||
@@ -340,7 +297,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
||||
else
|
||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||
}
|
||||
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
||||
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -380,9 +337,10 @@ HnswSetNeighborTuple(HnswNeighborTuple ntup, HnswElement e, int m)
|
||||
* Load neighbors from page
|
||||
*/
|
||||
static void
|
||||
LoadNeighborsFromPage(HnswElement element, Relation index, Page page, int m)
|
||||
LoadNeighborsFromPage(HnswElement element, Relation index, Page page)
|
||||
{
|
||||
HnswNeighborTuple ntup = (HnswNeighborTuple) PageGetItem(page, PageGetItemId(page, element->neighborOffno));
|
||||
int m = HnswGetM(index);
|
||||
int neighborCount = (element->level + 2) * m;
|
||||
|
||||
Assert(HnswIsNeighborTuple(ntup));
|
||||
@@ -423,7 +381,7 @@ LoadNeighborsFromPage(HnswElement element, Relation index, Page page, int m)
|
||||
* Load neighbors
|
||||
*/
|
||||
void
|
||||
HnswLoadNeighbors(HnswElement element, Relation index, int m)
|
||||
HnswLoadNeighbors(HnswElement element, Relation index)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
@@ -432,7 +390,7 @@ HnswLoadNeighbors(HnswElement element, Relation index, int m)
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
|
||||
LoadNeighborsFromPage(element, index, page, m);
|
||||
LoadNeighborsFromPage(element, index, page);
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -463,9 +421,8 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
||||
|
||||
if (loadVec)
|
||||
{
|
||||
Datum value = PointerGetDatum(&etup->value);
|
||||
|
||||
element->value = datumCopy(value, false, -1);
|
||||
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
||||
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -493,7 +450,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
|
||||
/* Calculate distance */
|
||||
if (distance != NULL)
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -504,7 +461,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
static float
|
||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||
{
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -586,7 +543,7 @@ AddToVisited(HTAB *v, HnswCandidate * hc, Relation index, bool *found)
|
||||
* Algorithm 2 from paper
|
||||
*/
|
||||
List *
|
||||
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
|
||||
HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, bool inserting, HnswElement skipElement)
|
||||
{
|
||||
ListCell *lc2;
|
||||
|
||||
@@ -641,7 +598,7 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
||||
break;
|
||||
|
||||
if (c->element->neighbors == NULL)
|
||||
HnswLoadNeighbors(c->element, index, m);
|
||||
HnswLoadNeighbors(c->element, index);
|
||||
|
||||
/* Get the neighborhood at layer lc */
|
||||
neighborhood = &c->element->neighbors[lc];
|
||||
@@ -710,34 +667,6 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
||||
return w;
|
||||
}
|
||||
|
||||
/*
|
||||
* Compare candidate distances
|
||||
*/
|
||||
static int
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||
#else
|
||||
CompareCandidateDistances(const void *a, const void *b)
|
||||
#endif
|
||||
{
|
||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||
|
||||
if (hca->distance < hcb->distance)
|
||||
return 1;
|
||||
|
||||
if (hca->distance > hcb->distance)
|
||||
return -1;
|
||||
|
||||
if (hca->element < hcb->element)
|
||||
return 1;
|
||||
|
||||
if (hca->element > hcb->element)
|
||||
return -1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/*
|
||||
* Calculate the distance between elements
|
||||
*/
|
||||
@@ -767,7 +696,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
||||
}
|
||||
}
|
||||
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -794,77 +723,33 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
||||
* Algorithm 4 from paper
|
||||
*/
|
||||
static List *
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
||||
{
|
||||
List *r = NIL;
|
||||
List *w = list_copy(c);
|
||||
pairingheap *wd;
|
||||
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
||||
List *added = NIL;
|
||||
bool removedAny = false;
|
||||
|
||||
if (list_length(w) <= m)
|
||||
return w;
|
||||
|
||||
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
||||
|
||||
/* Ensure order of candidates is deterministic for closer caching */
|
||||
if (sortCandidates)
|
||||
list_sort(w, CompareCandidateDistances);
|
||||
|
||||
while (list_length(w) > 0 && list_length(r) < m)
|
||||
{
|
||||
/* Assumes w is already ordered desc */
|
||||
HnswCandidate *e = llast(w);
|
||||
bool closer;
|
||||
|
||||
w = list_delete_last(w);
|
||||
|
||||
/* Use previous state of r and wd to skip work when possible */
|
||||
if (mustCalculate)
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
else if (list_length(added) > 0)
|
||||
{
|
||||
/*
|
||||
* If the current candidate was closer, we only need to compare it
|
||||
* with the other candidates that we have added.
|
||||
*/
|
||||
if (e->closer)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
|
||||
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
|
||||
if (!e->closer)
|
||||
removedAny = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
/*
|
||||
* If we have removed any candidates from closer, a candidate
|
||||
* that was not closer earlier might now be.
|
||||
*/
|
||||
if (removedAny)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
if (e->closer)
|
||||
added = lappend(added, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (e == newCandidate)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
if (e->closer)
|
||||
added = lappend(added, e);
|
||||
}
|
||||
|
||||
if (e->closer)
|
||||
if (closer)
|
||||
r = lappend(r, e);
|
||||
else
|
||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||
}
|
||||
|
||||
/* Cached value can only be used in future if sorted deterministically */
|
||||
e2->neighbors[lc].closerSet = sortCandidates;
|
||||
|
||||
/* Keep pruned connections */
|
||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||
@@ -894,7 +779,7 @@ HnswFindDuplicate(HnswElement e)
|
||||
HnswCandidate *neighbor = &neighbors->items[i];
|
||||
|
||||
/* Exit early since ordered by distance */
|
||||
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
||||
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
||||
break;
|
||||
|
||||
/* Check for space */
|
||||
@@ -918,6 +803,28 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
|
||||
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
||||
}
|
||||
|
||||
/*
|
||||
* Compare candidate distances
|
||||
*/
|
||||
static int
|
||||
#if PG_VERSION_NUM >= 130000
|
||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||
#else
|
||||
CompareCandidateDistances(const void *a, const void *b)
|
||||
#endif
|
||||
{
|
||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||
|
||||
if (hca->distance < hcb->distance)
|
||||
return 1;
|
||||
|
||||
if (hca->distance > hcb->distance)
|
||||
return -1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/*
|
||||
* Update connections
|
||||
*/
|
||||
@@ -947,13 +854,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
/* Load elements on insert */
|
||||
if (index != NULL)
|
||||
{
|
||||
Datum q = hc->element->value;
|
||||
Datum q = PointerGetDatum(hc->element->vec);
|
||||
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
{
|
||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||
|
||||
if (!DatumGetPointer(hc3->element->value))
|
||||
if (hc3->element->vec == NULL)
|
||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||
else
|
||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||
@@ -971,12 +878,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
{
|
||||
List *c = NIL;
|
||||
|
||||
/* Add candidates */
|
||||
/* Add and sort candidates */
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
c = lappend(c, ¤tNeighbors->items[i]);
|
||||
c = lappend(c, &hc2);
|
||||
list_sort(c, CompareCandidateDistances);
|
||||
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
||||
|
||||
/* Should not happen */
|
||||
if (pruned == NULL)
|
||||
@@ -1034,7 +942,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *w;
|
||||
int level = element->level;
|
||||
int entryLevel;
|
||||
Datum q = element->value;
|
||||
Datum q = PointerGetDatum(element->vec);
|
||||
HnswElement skipElement = existing ? element : NULL;
|
||||
|
||||
/* No neighbors if no entry point */
|
||||
@@ -1048,7 +956,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
/* 1st phase: greedy search to insert level */
|
||||
for (int lc = entryLevel; lc >= level + 1; lc--)
|
||||
{
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, m, true, skipElement);
|
||||
w = HnswSearchLayer(q, ep, 1, lc, index, procinfo, collation, true, skipElement);
|
||||
ep = w;
|
||||
}
|
||||
|
||||
@@ -1066,7 +974,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *neighbors;
|
||||
List *lw;
|
||||
|
||||
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, m, true, skipElement);
|
||||
w = HnswSearchLayer(q, ep, efConstruction, lc, index, procinfo, collation, true, skipElement);
|
||||
|
||||
/* Elements being deleted or skipped can help with search */
|
||||
/* but should be removed before selecting neighbors */
|
||||
@@ -1075,12 +983,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
else
|
||||
lw = w;
|
||||
|
||||
/*
|
||||
* Candidates are sorted, but not deterministically. Could set
|
||||
* sortCandidates to true for in-memory builds to enable closer
|
||||
* caching, but there does not seem to be a difference in performance.
|
||||
*/
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
||||
|
||||
AddConnections(element, neighbors, lm, lc);
|
||||
|
||||
|
||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
|
||||
if (itemUpdated)
|
||||
{
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
|
||||
/* Mark rest as invalid */
|
||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||
@@ -128,7 +128,10 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||
|
||||
if (updated)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
GenericXLogAbort(state);
|
||||
|
||||
@@ -226,6 +229,7 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -326,10 +330,7 @@ RepairGraph(HnswVacuumState * vacuumstate)
|
||||
BufferAccessStrategy bas = vacuumstate->bas;
|
||||
BlockNumber blkno = HNSW_HEAD_BLKNO;
|
||||
|
||||
/*
|
||||
* Wait for inserts to complete. Inserts before this point may have
|
||||
* neighbors about to be deleted. Inserts after this point will not.
|
||||
*/
|
||||
/* Wait for inserts to complete */
|
||||
LockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||
UnlockPage(index, HNSW_UPDATE_LOCK, ExclusiveLock);
|
||||
|
||||
@@ -442,11 +443,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
Relation index = vacuumstate->index;
|
||||
BufferAccessStrategy bas = vacuumstate->bas;
|
||||
|
||||
/*
|
||||
* Wait for index scans to complete. Scans before this point may contain
|
||||
* tuples about to be deleted. Scans after this point will not, since the
|
||||
* graph has been repaired.
|
||||
*/
|
||||
/* Wait for selects to complete */
|
||||
LockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||
UnlockPage(index, HNSW_SCAN_LOCK, ExclusiveLock);
|
||||
|
||||
@@ -481,7 +478,6 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
HnswNeighborTuple ntup;
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Datum value;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
BlockNumber neighborPage;
|
||||
@@ -505,11 +501,8 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||
continue;
|
||||
|
||||
/* Get datum */
|
||||
value = PointerGetDatum(&etup->value);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||
|
||||
/* Get neighbor page */
|
||||
@@ -532,7 +525,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
|
||||
/* Overwrite element */
|
||||
etup->deleted = 1;
|
||||
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
||||
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
||||
|
||||
/* Overwrite neighbors */
|
||||
for (int i = 0; i < ntup->count; i++)
|
||||
@@ -547,6 +540,9 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
if (nbuf != buf)
|
||||
UnlockReleaseBuffer(nbuf);
|
||||
@@ -586,6 +582,7 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
||||
vacuumstate->stats = stats;
|
||||
vacuumstate->callback = callback;
|
||||
vacuumstate->callback_state = callback_state;
|
||||
vacuumstate->m = HnswGetM(index);
|
||||
vacuumstate->efConstruction = HnswGetEfConstruction(index);
|
||||
vacuumstate->bas = GetAccessStrategy(BAS_BULKREAD);
|
||||
vacuumstate->procinfo = index_getprocinfo(index, 1, HNSW_DISTANCE_PROC);
|
||||
@@ -595,9 +592,6 @@ InitVacuumState(HnswVacuumState * vacuumstate, IndexVacuumInfo *info, IndexBulkD
|
||||
"Hnsw vacuum temporary context",
|
||||
ALLOCSET_DEFAULT_SIZES);
|
||||
|
||||
/* Get m from metapage */
|
||||
HnswGetMetaPageInfo(index, &vacuumstate->m, NULL);
|
||||
|
||||
/* Create hash table */
|
||||
hash_ctl.keysize = sizeof(ItemPointerData);
|
||||
hash_ctl.entrysize = sizeof(ItemPointerData);
|
||||
|
||||
@@ -10,8 +10,8 @@
|
||||
#include "ivfflat.h"
|
||||
#include "miscadmin.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "tcop/tcopprot.h"
|
||||
#include "utils/memutils.h"
|
||||
#include "tcop/tcopprot.h"
|
||||
|
||||
#if PG_VERSION_NUM >= 140000
|
||||
#include "utils/backend_progress.h"
|
||||
@@ -506,30 +506,29 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size listSize;
|
||||
OffsetNumber offno;
|
||||
Size itemsz;
|
||||
IvfflatList list;
|
||||
|
||||
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||
list = palloc(listSize);
|
||||
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||
list = palloc(itemsz);
|
||||
|
||||
buf = IvfflatNewBuffer(index, forkNum);
|
||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||
|
||||
for (int i = 0; i < lists; i++)
|
||||
{
|
||||
OffsetNumber offno;
|
||||
|
||||
/* Load list */
|
||||
list->startPage = InvalidBlockNumber;
|
||||
list->insertPage = InvalidBlockNumber;
|
||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||
|
||||
/* Ensure free space */
|
||||
if (PageGetFreeSpace(page) < listSize)
|
||||
if (PageGetFreeSpace(page) < itemsz)
|
||||
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
||||
|
||||
/* Add the item */
|
||||
offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
|
||||
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false);
|
||||
if (offno == InvalidOffsetNumber)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
|
||||
@@ -71,7 +71,7 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
||||
int lists;
|
||||
double ratio;
|
||||
double spc_seq_page_cost;
|
||||
Relation index;
|
||||
Relation indexRel;
|
||||
#if PG_VERSION_NUM < 120000
|
||||
List *qinfos;
|
||||
#endif
|
||||
@@ -89,9 +89,9 @@ ivfflatcostestimate(PlannerInfo *root, IndexPath *path, double loop_count,
|
||||
|
||||
MemSet(&costs, 0, sizeof(costs));
|
||||
|
||||
index = index_open(path->indexinfo->indexoid, NoLock);
|
||||
IvfflatGetMetaPageInfo(index, &lists, NULL);
|
||||
index_close(index, NoLock);
|
||||
indexRel = index_open(path->indexinfo->indexoid, NoLock);
|
||||
lists = IvfflatGetLists(indexRel);
|
||||
index_close(indexRel, NoLock);
|
||||
|
||||
/* Get the ratio of lists that we need to visit */
|
||||
ratio = ((double) ivfflat_probes) / lists;
|
||||
|
||||
@@ -244,8 +244,8 @@ typedef struct IvfflatScanList
|
||||
typedef struct IvfflatScanOpaqueData
|
||||
{
|
||||
int probes;
|
||||
int dimensions;
|
||||
bool first;
|
||||
Buffer buf;
|
||||
|
||||
/* Sorting */
|
||||
Tuplesortstate *sortstate;
|
||||
@@ -275,10 +275,9 @@ VectorArray VectorArrayInit(int maxlen, int dimensions);
|
||||
void VectorArrayFree(VectorArray arr);
|
||||
void PrintVectorArray(char *msg, VectorArray arr);
|
||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
||||
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum);
|
||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||
int IvfflatGetLists(Relation index);
|
||||
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
||||
void IvfflatUpdateList(Relation index, ListInfo listInfo, BlockNumber insertPage, BlockNumber originalInsertPage, BlockNumber startPage, ForkNumber forkNum);
|
||||
void IvfflatCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||
void IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **state, ForkNumber forkNum);
|
||||
|
||||
@@ -11,37 +11,36 @@
|
||||
* Find the list that minimizes the distance function
|
||||
*/
|
||||
static void
|
||||
FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
IvfflatList list;
|
||||
double distance;
|
||||
double minDistance = DBL_MAX;
|
||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||
FmgrInfo *procinfo;
|
||||
Oid collation;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
/* Avoid compiler warning */
|
||||
listInfo->blkno = nextblkno;
|
||||
listInfo->offno = FirstOffsetNumber;
|
||||
|
||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||
collation = index->rd_indcollation[0];
|
||||
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC);
|
||||
collation = rel->rd_indcollation[0];
|
||||
|
||||
/* Search all list pages */
|
||||
while (BlockNumberIsValid(nextblkno))
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
cbuf = ReadBuffer(index, nextblkno);
|
||||
cbuf = ReadBuffer(rel, nextblkno);
|
||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||
cpage = BufferGetPage(cbuf);
|
||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
IvfflatList list;
|
||||
double distance;
|
||||
|
||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
||||
|
||||
@@ -64,7 +63,7 @@ FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo
|
||||
* Insert a tuple into the index
|
||||
*/
|
||||
static void
|
||||
InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||
{
|
||||
IndexTuple itup;
|
||||
Datum value;
|
||||
@@ -81,33 +80,33 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Normalize if needed */
|
||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC);
|
||||
if (normprocinfo != NULL)
|
||||
{
|
||||
if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
|
||||
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL))
|
||||
return;
|
||||
}
|
||||
|
||||
/* Find the insert page - sets the page and list info */
|
||||
FindInsertPage(index, values, &insertPage, &listInfo);
|
||||
FindInsertPage(rel, values, &insertPage, &listInfo);
|
||||
Assert(BlockNumberIsValid(insertPage));
|
||||
originalInsertPage = insertPage;
|
||||
|
||||
/* Form tuple */
|
||||
itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
|
||||
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull);
|
||||
itup->t_tid = *heap_tid;
|
||||
|
||||
/* Get tuple size */
|
||||
itemsz = MAXALIGN(IndexTupleSize(itup));
|
||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
|
||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
|
||||
|
||||
/* Find a page to insert the item */
|
||||
for (;;)
|
||||
{
|
||||
buf = ReadBuffer(index, insertPage);
|
||||
buf = ReadBuffer(rel, insertPage);
|
||||
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
||||
|
||||
state = GenericXLogStart(index);
|
||||
state = GenericXLogStart(rel);
|
||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||
|
||||
if (PageGetFreeSpace(page) >= itemsz)
|
||||
@@ -127,9 +126,9 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
Page newpage;
|
||||
|
||||
/* Add a new page */
|
||||
LockRelationForExtension(index, ExclusiveLock);
|
||||
newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
|
||||
UnlockRelationForExtension(index, ExclusiveLock);
|
||||
LockRelationForExtension(rel, ExclusiveLock);
|
||||
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM);
|
||||
UnlockRelationForExtension(rel, ExclusiveLock);
|
||||
|
||||
/* Init new page */
|
||||
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
||||
@@ -142,13 +141,15 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
/* Prepare new buffer */
|
||||
state = GenericXLogStart(index);
|
||||
state = GenericXLogStart(rel);
|
||||
buf = newbuf;
|
||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||
break;
|
||||
@@ -157,13 +158,13 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
|
||||
/* Add to next offset */
|
||||
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel));
|
||||
|
||||
IvfflatCommitBuffer(buf, state);
|
||||
|
||||
/* Update the insert page */
|
||||
if (insertPage != originalInsertPage)
|
||||
IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
@@ -17,6 +17,10 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
||||
FmgrInfo *procinfo;
|
||||
Oid collation;
|
||||
int64 j;
|
||||
double distance;
|
||||
double sum;
|
||||
double choice;
|
||||
Vector *vec;
|
||||
float *weight = palloc(samples->length * sizeof(float));
|
||||
int numCenters = centers->maxlen;
|
||||
int numSamples = samples->length;
|
||||
@@ -29,21 +33,17 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
||||
centers->length++;
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
weight[j] = FLT_MAX;
|
||||
weight[j] = DBL_MAX;
|
||||
|
||||
for (int i = 0; i < numCenters; i++)
|
||||
{
|
||||
double sum;
|
||||
double choice;
|
||||
|
||||
CHECK_FOR_INTERRUPTS();
|
||||
|
||||
sum = 0.0;
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
Vector *vec = VectorArrayGet(samples, j);
|
||||
double distance;
|
||||
vec = VectorArrayGet(samples, j);
|
||||
|
||||
/* Only need to compute distance for new center */
|
||||
/* TODO Use triangle inequality to reduce distance calculations */
|
||||
@@ -112,6 +112,7 @@ CompareVectors(const void *a, const void *b)
|
||||
static void
|
||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
Vector *vec;
|
||||
int dimensions = centers->dim;
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||
@@ -122,7 +123,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||
for (int i = 0; i < samples->length; i++)
|
||||
{
|
||||
Vector *vec = VectorArrayGet(samples, i);
|
||||
vec = VectorArrayGet(samples, i);
|
||||
|
||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||
{
|
||||
@@ -135,7 +136,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Fill remaining with random data */
|
||||
while (centers->length < centers->maxlen)
|
||||
{
|
||||
Vector *vec = VectorArrayGet(centers, centers->length);
|
||||
vec = VectorArrayGet(centers, centers->length);
|
||||
|
||||
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
||||
vec->dim = dimensions;
|
||||
@@ -167,6 +168,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
Oid collation;
|
||||
Vector *vec;
|
||||
Vector *newCenter;
|
||||
int iteration;
|
||||
int64 j;
|
||||
int64 k;
|
||||
int dimensions = centers->dim;
|
||||
@@ -180,6 +182,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
float *s;
|
||||
float *halfcdist;
|
||||
float *newcdist;
|
||||
int changes;
|
||||
double minDistance;
|
||||
int closestCenter;
|
||||
double distance;
|
||||
bool rj;
|
||||
bool rjreset;
|
||||
double dxcx;
|
||||
double dxc;
|
||||
|
||||
/* Calculate allocation sizes */
|
||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||
@@ -237,14 +247,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
float minDistance = FLT_MAX;
|
||||
int closestCenter = 0;
|
||||
minDistance = DBL_MAX;
|
||||
closestCenter = 0;
|
||||
|
||||
/* Find closest center */
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
/* TODO Use Lemma 1 in k-means++ initialization */
|
||||
float distance = lowerBound[j * numCenters + k];
|
||||
distance = lowerBound[j * numCenters + k];
|
||||
|
||||
if (distance < minDistance)
|
||||
{
|
||||
@@ -258,14 +268,13 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
}
|
||||
|
||||
/* Give 500 iterations to converge */
|
||||
for (int iteration = 0; iteration < 500; iteration++)
|
||||
for (iteration = 0; iteration < 500; iteration++)
|
||||
{
|
||||
int changes = 0;
|
||||
bool rjreset;
|
||||
|
||||
/* Can take a while, so ensure we can interrupt */
|
||||
CHECK_FOR_INTERRUPTS();
|
||||
|
||||
changes = 0;
|
||||
|
||||
/* Step 1: For all centers, compute distance */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
{
|
||||
@@ -273,8 +282,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (k = j + 1; k < numCenters; k++)
|
||||
{
|
||||
float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
|
||||
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
halfcdist[j * numCenters + k] = distance;
|
||||
halfcdist[k * numCenters + j] = distance;
|
||||
}
|
||||
@@ -283,12 +291,10 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* For all centers c, compute s(c) */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
{
|
||||
float minDistance = FLT_MAX;
|
||||
minDistance = DBL_MAX;
|
||||
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
float distance;
|
||||
|
||||
if (j == k)
|
||||
continue;
|
||||
|
||||
@@ -304,8 +310,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
bool rj;
|
||||
|
||||
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
||||
if (upperBound[j] <= s[closestCenters[j]])
|
||||
continue;
|
||||
@@ -314,8 +318,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
float dxcx;
|
||||
|
||||
/* Step 3: For all remaining points x and centers c */
|
||||
if (k == closestCenters[j])
|
||||
continue;
|
||||
@@ -345,7 +347,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
/* Step 3b */
|
||||
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
||||
{
|
||||
float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||
|
||||
/* d(x,c) calculated */
|
||||
lowerBound[j * numCenters + k] = dxc;
|
||||
@@ -359,6 +361,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
changes++;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -375,8 +378,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
for (j = 0; j < numSamples; j++)
|
||||
{
|
||||
int closestCenter;
|
||||
|
||||
vec = VectorArrayGet(samples, j);
|
||||
closestCenter = closestCenters[j];
|
||||
|
||||
@@ -425,7 +426,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
{
|
||||
for (k = 0; k < numCenters; k++)
|
||||
{
|
||||
float distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||
distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||
|
||||
if (distance < 0)
|
||||
distance = 0;
|
||||
@@ -441,7 +442,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
||||
|
||||
/* Step 7 */
|
||||
for (j = 0; j < numCenters; j++)
|
||||
VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
|
||||
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions));
|
||||
|
||||
if (changes == 0 && iteration != 0)
|
||||
break;
|
||||
@@ -464,6 +465,9 @@ static void
|
||||
CheckCenters(Relation index, VectorArray centers)
|
||||
{
|
||||
FmgrInfo *normprocinfo;
|
||||
Oid collation;
|
||||
Vector *vec;
|
||||
double norm;
|
||||
|
||||
if (centers->length != centers->maxlen)
|
||||
elog(ERROR, "Not enough centers. Please report a bug.");
|
||||
@@ -471,7 +475,7 @@ CheckCenters(Relation index, VectorArray centers)
|
||||
/* Ensure no NaN or infinite values */
|
||||
for (int i = 0; i < centers->length; i++)
|
||||
{
|
||||
Vector *vec = VectorArrayGet(centers, i);
|
||||
vec = VectorArrayGet(centers, i);
|
||||
|
||||
for (int j = 0; j < vec->dim; j++)
|
||||
{
|
||||
@@ -497,12 +501,11 @@ CheckCenters(Relation index, VectorArray centers)
|
||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||
if (normprocinfo != NULL)
|
||||
{
|
||||
Oid collation = index->rd_indcollation[0];
|
||||
collation = index->rd_indcollation[0];
|
||||
|
||||
for (int i = 0; i < centers->length; i++)
|
||||
{
|
||||
double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||
|
||||
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||
if (norm == 0)
|
||||
elog(ERROR, "Zero norm detected. Please report a bug.");
|
||||
}
|
||||
|
||||
114
src/ivfscan.c
114
src/ivfscan.c
@@ -31,36 +31,36 @@ CompareLists(const pairingheap_node *a, const pairingheap_node *b, void *arg)
|
||||
static void
|
||||
GetScanLists(IndexScanDesc scan, Datum value)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
IvfflatList list;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||
int listCount = 0;
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
double distance;
|
||||
IvfflatScanList *scanlist;
|
||||
double maxDistance = DBL_MAX;
|
||||
|
||||
/* Search all list pages */
|
||||
while (BlockNumberIsValid(nextblkno))
|
||||
{
|
||||
Buffer cbuf;
|
||||
Page cpage;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
cbuf = ReadBuffer(scan->indexRelation, nextblkno);
|
||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||
cpage = BufferGetPage(cbuf);
|
||||
|
||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
IvfflatList list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
double distance;
|
||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||
|
||||
/* Use procinfo from the index instead of scan key for performance */
|
||||
distance = DatumGetFloat8(FunctionCall2Coll(so->procinfo, so->collation, PointerGetDatum(&list->center), value));
|
||||
|
||||
if (listCount < so->probes)
|
||||
{
|
||||
IvfflatScanList *scanlist;
|
||||
|
||||
scanlist = &so->lists[listCount];
|
||||
scanlist->startPage = list->startPage;
|
||||
scanlist->distance = distance;
|
||||
@@ -75,8 +75,6 @@ GetScanLists(IndexScanDesc scan, Datum value)
|
||||
}
|
||||
else if (distance < maxDistance)
|
||||
{
|
||||
IvfflatScanList *scanlist;
|
||||
|
||||
/* Remove */
|
||||
scanlist = (IvfflatScanList *) pairingheap_remove_first(so->listQueue);
|
||||
|
||||
@@ -103,6 +101,14 @@ static void
|
||||
GetScanItems(IndexScanDesc scan, Datum value)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
Buffer buf;
|
||||
Page page;
|
||||
IndexTuple itup;
|
||||
BlockNumber searchPage;
|
||||
OffsetNumber offno;
|
||||
OffsetNumber maxoffno;
|
||||
Datum datum;
|
||||
bool isnull;
|
||||
TupleDesc tupdesc = RelationGetDescr(scan->indexRelation);
|
||||
double tuples = 0;
|
||||
|
||||
@@ -122,28 +128,19 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
/* Search closest probes lists */
|
||||
while (!pairingheap_is_empty(so->listQueue))
|
||||
{
|
||||
BlockNumber searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
||||
searchPage = ((IvfflatScanList *) pairingheap_remove_first(so->listQueue))->startPage;
|
||||
|
||||
/* Search all entry pages for list */
|
||||
while (BlockNumberIsValid(searchPage))
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
OffsetNumber maxoffno;
|
||||
|
||||
buf = ReadBufferExtended(scan->indexRelation, MAIN_FORKNUM, searchPage, RBM_NORMAL, bas);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
maxoffno = PageGetMaxOffsetNumber(page);
|
||||
|
||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||
{
|
||||
IndexTuple itup;
|
||||
Datum datum;
|
||||
bool isnull;
|
||||
ItemId itemid = PageGetItemId(page, offno);
|
||||
|
||||
itup = (IndexTuple) PageGetItem(page, itemid);
|
||||
itup = (IndexTuple) PageGetItem(page, PageGetItemId(page, offno));
|
||||
datum = index_getattr(itup, 1, tupdesc, &isnull);
|
||||
|
||||
/*
|
||||
@@ -157,6 +154,8 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
slot->tts_isnull[0] = false;
|
||||
slot->tts_values[1] = PointerGetDatum(&itup->t_tid);
|
||||
slot->tts_isnull[1] = false;
|
||||
slot->tts_values[2] = Int32GetDatum((int) searchPage);
|
||||
slot->tts_isnull[2] = false;
|
||||
ExecStoreVirtualTuple(slot);
|
||||
|
||||
tuplesort_puttupleslot(so->sortstate, slot);
|
||||
@@ -181,6 +180,29 @@ GetScanItems(IndexScanDesc scan, Datum value)
|
||||
tuplesort_performsort(so->sortstate);
|
||||
}
|
||||
|
||||
/*
|
||||
* Get dimensions from metapage
|
||||
*/
|
||||
static int
|
||||
GetDimensions(Relation index)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
IvfflatMetaPage metap;
|
||||
int dimensions;
|
||||
|
||||
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = IvfflatPageGetMeta(page);
|
||||
|
||||
dimensions = metap->dimensions;
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
return dimensions;
|
||||
}
|
||||
|
||||
/*
|
||||
* Prepare for an index scan
|
||||
*/
|
||||
@@ -190,7 +212,6 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
IndexScanDesc scan;
|
||||
IvfflatScanOpaque so;
|
||||
int lists;
|
||||
int dimensions;
|
||||
AttrNumber attNums[] = {1};
|
||||
Oid sortOperators[] = {Float8LessOperator};
|
||||
Oid sortCollations[] = {InvalidOid};
|
||||
@@ -198,17 +219,15 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
int probes = ivfflat_probes;
|
||||
|
||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||
|
||||
/* Get lists and dimensions from metapage */
|
||||
IvfflatGetMetaPageInfo(index, &lists, &dimensions);
|
||||
lists = IvfflatGetLists(scan->indexRelation);
|
||||
|
||||
if (probes > lists)
|
||||
probes = lists;
|
||||
|
||||
so = (IvfflatScanOpaque) palloc(offsetof(IvfflatScanOpaqueData, lists) + probes * sizeof(IvfflatScanList));
|
||||
so->buf = InvalidBuffer;
|
||||
so->first = true;
|
||||
so->probes = probes;
|
||||
so->dimensions = dimensions;
|
||||
|
||||
/* Set support functions */
|
||||
so->procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||
@@ -217,12 +236,13 @@ ivfflatbeginscan(Relation index, int nkeys, int norderbys)
|
||||
|
||||
/* Create tuple description for sorting */
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
so->tupdesc = CreateTemplateTupleDesc(2);
|
||||
so->tupdesc = CreateTemplateTupleDesc(3);
|
||||
#else
|
||||
so->tupdesc = CreateTemplateTupleDesc(2, false);
|
||||
so->tupdesc = CreateTemplateTupleDesc(3, false);
|
||||
#endif
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 1, "distance", FLOAT8OID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "heaptid", TIDOID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 2, "tid", TIDOID, -1, 0);
|
||||
TupleDescInitEntry(so->tupdesc, (AttrNumber) 3, "indexblkno", INT4OID, -1, 0);
|
||||
|
||||
/* Prep sort */
|
||||
so->sortstate = tuplesort_begin_heap(so->tupdesc, 1, attNums, sortOperators, sortCollations, nullsFirstFlags, work_mem, NULL, false);
|
||||
@@ -288,13 +308,8 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
if (scan->orderByData == NULL)
|
||||
elog(ERROR, "cannot scan ivfflat index without order");
|
||||
|
||||
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
|
||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
||||
|
||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||
value = PointerGetDatum(InitVector(so->dimensions));
|
||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
||||
else
|
||||
{
|
||||
value = scan->orderByData->sk_argument;
|
||||
@@ -319,14 +334,27 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
|
||||
if (tuplesort_gettupleslot(so->sortstate, true, false, so->slot, NULL))
|
||||
{
|
||||
ItemPointer heaptid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||
ItemPointer tid = (ItemPointer) DatumGetPointer(slot_getattr(so->slot, 2, &so->isnull));
|
||||
BlockNumber indexblkno = DatumGetInt32(slot_getattr(so->slot, 3, &so->isnull));
|
||||
|
||||
#if PG_VERSION_NUM >= 120000
|
||||
scan->xs_heaptid = *heaptid;
|
||||
scan->xs_heaptid = *tid;
|
||||
#else
|
||||
scan->xs_ctup.t_self = *heaptid;
|
||||
scan->xs_ctup.t_self = *tid;
|
||||
#endif
|
||||
|
||||
/* Unpin buffer */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
/*
|
||||
* An index scan must maintain a pin on the index page holding the
|
||||
* item last returned by amgettuple
|
||||
*
|
||||
* https://www.postgresql.org/docs/current/index-locking.html
|
||||
*/
|
||||
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||
|
||||
scan->xs_recheckorderby = false;
|
||||
return true;
|
||||
}
|
||||
@@ -342,6 +370,10 @@ ivfflatendscan(IndexScanDesc scan)
|
||||
{
|
||||
IvfflatScanOpaque so = (IvfflatScanOpaque) scan->opaque;
|
||||
|
||||
/* Release pin */
|
||||
if (BufferIsValid(so->buf))
|
||||
ReleaseBuffer(so->buf);
|
||||
|
||||
pairingheap_free(so->listQueue);
|
||||
tuplesort_end(so->sortstate);
|
||||
|
||||
|
||||
@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
|
||||
* Get proc
|
||||
*/
|
||||
FmgrInfo *
|
||||
IvfflatOptionalProcInfo(Relation index, uint16 procnum)
|
||||
IvfflatOptionalProcInfo(Relation rel, uint16 procnum)
|
||||
{
|
||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||
return NULL;
|
||||
|
||||
return index_getprocinfo(index, 1, procnum);
|
||||
return index_getprocinfo(rel, 1, procnum);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -136,6 +136,7 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
||||
void
|
||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -159,6 +160,8 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
||||
IvfflatInitPage(newbuf, newpage);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(*buf);
|
||||
MarkBufferDirty(newbuf);
|
||||
GenericXLogFinish(*state);
|
||||
|
||||
/* Unlock */
|
||||
@@ -169,29 +172,6 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
||||
*buf = newbuf;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the metapage info
|
||||
*/
|
||||
void
|
||||
IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions)
|
||||
{
|
||||
Buffer buf;
|
||||
Page page;
|
||||
IvfflatMetaPage metap;
|
||||
|
||||
buf = ReadBuffer(index, IVFFLAT_METAPAGE_BLKNO);
|
||||
LockBuffer(buf, BUFFER_LOCK_SHARE);
|
||||
page = BufferGetPage(buf);
|
||||
metap = IvfflatPageGetMeta(page);
|
||||
|
||||
*lists = metap->lists;
|
||||
|
||||
if (dimensions != NULL)
|
||||
*dimensions = metap->dimensions;
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
|
||||
/*
|
||||
* Update the start or insert page of a list
|
||||
*/
|
||||
|
||||
@@ -107,6 +107,7 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
||||
{
|
||||
/* Delete tuples */
|
||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
|
||||
@@ -695,8 +695,6 @@ vector_spherical_distance(PG_FUNCTION_ARGS)
|
||||
{
|
||||
Vector *a = PG_GETARG_VECTOR_P(0);
|
||||
Vector *b = PG_GETARG_VECTOR_P(1);
|
||||
float *ax = a->x;
|
||||
float *bx = b->x;
|
||||
float dp = 0.0;
|
||||
double distance;
|
||||
|
||||
@@ -704,7 +702,7 @@ vector_spherical_distance(PG_FUNCTION_ARGS)
|
||||
|
||||
/* Auto-vectorized */
|
||||
for (int i = 0; i < a->dim; i++)
|
||||
dp += ax[i] * bx[i];
|
||||
dp += a->x[i] * b->x[i];
|
||||
|
||||
distance = (double) dp;
|
||||
|
||||
|
||||
@@ -106,12 +106,6 @@ SELECT cosine_distance('[1,1]', '[1,1]');
|
||||
0
|
||||
(1 row)
|
||||
|
||||
SELECT cosine_distance('[1,0]', '[0,2]');
|
||||
cosine_distance
|
||||
-----------------
|
||||
1
|
||||
(1 row)
|
||||
|
||||
SELECT cosine_distance('[1,1]', '[-1,-1]');
|
||||
cosine_distance
|
||||
-----------------
|
||||
|
||||
@@ -25,7 +25,6 @@ SELECT inner_product('[3e38]', '[3e38]');
|
||||
SELECT cosine_distance('[1,2]', '[2,4]');
|
||||
SELECT cosine_distance('[1,2]', '[0,0]');
|
||||
SELECT cosine_distance('[1,1]', '[1,1]');
|
||||
SELECT cosine_distance('[1,0]', '[0,2]');
|
||||
SELECT cosine_distance('[1,1]', '[-1,-1]');
|
||||
SELECT cosine_distance('[1,2]', '[3]');
|
||||
SELECT cosine_distance('[1,1]', '[1.1,1.1]');
|
||||
|
||||
@@ -19,6 +19,8 @@ sub test_index_replay
|
||||
|
||||
# Wait for replica to catch up
|
||||
my $applname = $node_replica->name;
|
||||
|
||||
my $server_version_num = $node_primary->safe_psql("postgres", "SHOW server_version_num");
|
||||
my $caughtup_query = "SELECT pg_current_wal_lsn() <= replay_lsn FROM pg_stat_replication WHERE application_name = '$applname';";
|
||||
$node_primary->poll_query_until('postgres', $caughtup_query)
|
||||
or die "Timed out while waiting for replica 1 to catch up";
|
||||
|
||||
@@ -94,7 +94,7 @@ for my $i (0 .. $#operators)
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
# TODO fix test
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
@@ -115,7 +115,7 @@ for my $i (0 .. $#operators)
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
# TODO fix test
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
@@ -19,6 +19,8 @@ sub test_index_replay
|
||||
|
||||
# Wait for replica to catch up
|
||||
my $applname = $node_replica->name;
|
||||
|
||||
my $server_version_num = $node_primary->safe_psql("postgres", "SHOW server_version_num");
|
||||
my $caughtup_query = "SELECT pg_current_wal_lsn() <= replay_lsn FROM pg_stat_replication WHERE application_name = '$applname';";
|
||||
$node_primary->poll_query_until('postgres', $caughtup_query)
|
||||
or die "Timed out while waiting for replica 1 to catch up";
|
||||
|
||||
@@ -83,11 +83,31 @@ for my $i (0 .. $#operators)
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass);");
|
||||
# Build index serially
|
||||
$node->safe_psql("postgres", qq(
|
||||
SET max_parallel_maintenance_workers = 0;
|
||||
CREATE INDEX idx ON tst USING hnsw (v $opclass);
|
||||
));
|
||||
|
||||
# Test approximate results
|
||||
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||
test_recall($min, $operator);
|
||||
|
||||
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||
|
||||
# Build index in parallel
|
||||
my ($ret, $stdout, $stderr) = $node->psql("postgres", qq(
|
||||
SET client_min_messages = DEBUG;
|
||||
SET min_parallel_table_scan_size = 1;
|
||||
CREATE INDEX idx ON tst USING hnsw (v $opclass);
|
||||
));
|
||||
is($ret, 0, $stderr);
|
||||
like($stderr, qr/using \d+ parallel workers/);
|
||||
|
||||
# Test approximate results
|
||||
test_recall($min, $operator);
|
||||
|
||||
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||
}
|
||||
|
||||
done_testing();
|
||||
|
||||
@@ -89,7 +89,7 @@ foreach (@queries)
|
||||
test_recall(0.20, $limit, "before vacuum");
|
||||
test_recall(0.95, 100, "before vacuum");
|
||||
|
||||
# TODO Test concurrent inserts with vacuum
|
||||
# TODO test concurrent inserts with vacuum
|
||||
$node->safe_psql("postgres", "VACUUM tst;");
|
||||
|
||||
test_recall(0.95, $limit, "after vacuum");
|
||||
|
||||
@@ -1,117 +0,0 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $node;
|
||||
my @queries = ();
|
||||
my @expected;
|
||||
my $limit = 20;
|
||||
|
||||
sub test_recall
|
||||
{
|
||||
my ($probes, $min, $operator) = @_;
|
||||
my $correct = 0;
|
||||
my $total = 0;
|
||||
|
||||
my $explain = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = $probes;
|
||||
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||
));
|
||||
like($explain, qr/Index Scan using idx on tst/);
|
||||
|
||||
for my $i (0 .. $#queries)
|
||||
{
|
||||
my $actual = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = $probes;
|
||||
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||
));
|
||||
my @actual_ids = split("\n", $actual);
|
||||
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||
|
||||
my @expected_ids = split("\n", $expected[$i]);
|
||||
|
||||
foreach (@expected_ids)
|
||||
{
|
||||
if (exists($actual_set{$_}))
|
||||
{
|
||||
$correct++;
|
||||
}
|
||||
$total++;
|
||||
}
|
||||
}
|
||||
|
||||
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||
}
|
||||
|
||||
# Initialize node
|
||||
$node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i serial, v vector(3));");
|
||||
|
||||
# Generate queries
|
||||
for (1 .. 20)
|
||||
{
|
||||
my $r1 = rand();
|
||||
my $r2 = rand();
|
||||
my $r3 = rand();
|
||||
push(@queries, "[$r1,$r2,$r3]");
|
||||
}
|
||||
|
||||
# Check each index type
|
||||
my @operators = ("<->", "<#>", "<=>");
|
||||
my @opclasses = ("vector_l2_ops", "vector_ip_ops", "vector_cosine_ops");
|
||||
|
||||
for my $i (0 .. $#operators)
|
||||
{
|
||||
my $operator = $operators[$i];
|
||||
my $opclass = $opclasses[$i];
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX idx ON tst USING ivfflat (v $opclass);");
|
||||
|
||||
# Use concurrent inserts
|
||||
$node->pgbench(
|
||||
"--no-vacuum --client=10 --transactions=1000",
|
||||
0,
|
||||
[qr{actually processed}],
|
||||
[qr{^$}],
|
||||
"concurrent INSERTs",
|
||||
{
|
||||
"017_ivfflat_insert_recall_$opclass" => "INSERT INTO tst (v) SELECT ARRAY[random(), random(), random()] FROM generate_series(1, 10) i;"
|
||||
}
|
||||
);
|
||||
|
||||
# Get exact results
|
||||
@expected = ();
|
||||
foreach (@queries)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", qq(
|
||||
SET enable_indexscan = off;
|
||||
SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;
|
||||
));
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Test approximate results
|
||||
if ($operator ne "<#>")
|
||||
{
|
||||
# TODO Fix test (uniform random vectors all have similar inner product)
|
||||
test_recall(1, 0.71, $operator);
|
||||
test_recall(10, 0.95, $operator);
|
||||
}
|
||||
# Account for equal distances
|
||||
test_recall(100, 0.9925, $operator);
|
||||
|
||||
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||
$node->safe_psql("postgres", "TRUNCATE tst;");
|
||||
}
|
||||
|
||||
done_testing();
|
||||
@@ -1,43 +0,0 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $dim = 3;
|
||||
|
||||
my $array_sql = join(",", ('random()') x $dim);
|
||||
|
||||
# Initialize node
|
||||
my $node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table and index
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i serial, v vector($dim));");
|
||||
$node->safe_psql("postgres",
|
||||
"INSERT INTO tst (v) SELECT ARRAY[$array_sql] FROM generate_series(1, 10000) i;"
|
||||
);
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING ivfflat (v vector_l2_ops);");
|
||||
|
||||
# Delete data
|
||||
$node->safe_psql("postgres", "DELETE FROM tst WHERE i % 100 != 0;");
|
||||
|
||||
my $exp = $node->safe_psql("postgres", qq(
|
||||
SET enable_indexscan = off;
|
||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
||||
));
|
||||
|
||||
# Run twice to make sure correct tuples marked as dead
|
||||
for (1 .. 2)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SET ivfflat.probes = 100;
|
||||
SELECT i FROM tst ORDER BY v <-> '[0,0,0]';
|
||||
));
|
||||
is($res, $exp);
|
||||
}
|
||||
|
||||
done_testing();
|
||||
@@ -1,113 +0,0 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $node;
|
||||
my @queries = ();
|
||||
my @expected;
|
||||
my $limit = 20;
|
||||
|
||||
sub test_recall
|
||||
{
|
||||
my ($min, $operator) = @_;
|
||||
my $correct = 0;
|
||||
my $total = 0;
|
||||
|
||||
my $explain = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||
));
|
||||
like($explain, qr/Index Scan/);
|
||||
|
||||
for my $i (0 .. $#queries)
|
||||
{
|
||||
my $actual = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||
));
|
||||
my @actual_ids = split("\n", $actual);
|
||||
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||
|
||||
my @expected_ids = split("\n", $expected[$i]);
|
||||
|
||||
foreach (@expected_ids)
|
||||
{
|
||||
if (exists($actual_set{$_}))
|
||||
{
|
||||
$correct++;
|
||||
}
|
||||
$total++;
|
||||
}
|
||||
}
|
||||
|
||||
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||
}
|
||||
|
||||
# Initialize node
|
||||
$node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
|
||||
$node->safe_psql("postgres",
|
||||
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
|
||||
);
|
||||
|
||||
$node->safe_psql("postgres", qq(
|
||||
CREATE FUNCTION float4_l2_distance(float4[], float4[]) RETURNS float8
|
||||
AS 'BEGIN RETURN l2_distance(\$1::vector, \$2::vector); END;'
|
||||
LANGUAGE plpgsql IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
|
||||
AS 'BEGIN RETURN vector_l2_squared_distance(\$1::vector, \$2::vector); END;'
|
||||
LANGUAGE plpgsql IMMUTABLE STRICT PARALLEL SAFE;
|
||||
|
||||
CREATE OPERATOR <-> (
|
||||
LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = float4_l2_distance,
|
||||
COMMUTATOR = '<->'
|
||||
);
|
||||
|
||||
CREATE OPERATOR CLASS float4_l2_ops
|
||||
FOR TYPE float4[] USING hnsw AS
|
||||
OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
|
||||
FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
|
||||
));
|
||||
|
||||
# Generate queries
|
||||
for (1 .. 20)
|
||||
{
|
||||
my $r1 = rand();
|
||||
my $r2 = rand();
|
||||
my $r3 = rand();
|
||||
push(@queries, "{$r1,$r2,$r3}");
|
||||
}
|
||||
|
||||
# Check each index type
|
||||
my @operators = ("<->");
|
||||
my @opclasses = ("float4_l2_ops");
|
||||
|
||||
for my $i (0 .. $#operators)
|
||||
{
|
||||
my $operator = $operators[$i];
|
||||
my $opclass = $opclasses[$i];
|
||||
|
||||
# Get exact results
|
||||
@expected = ();
|
||||
foreach (@queries)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass) WITH (dimensions = 3);");
|
||||
|
||||
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||
test_recall($min, $operator);
|
||||
}
|
||||
|
||||
done_testing();
|
||||
@@ -1,4 +1,4 @@
|
||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||
default_version = '0.5.1'
|
||||
comment = 'vector data type and ivfflat access method'
|
||||
default_version = '0.5.0'
|
||||
module_pathname = '$libdir/vector'
|
||||
relocatable = true
|
||||
|
||||
Reference in New Issue
Block a user