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5 Commits
hnsw-array
...
hnsw-build
| Author | SHA1 | Date | |
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5934aeb30d | ||
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115c2bd91d | ||
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97ac01773d | ||
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8d7abb6590 | ||
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b247b688a8 |
@@ -1,7 +1,6 @@
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## 0.5.1 (unreleased)
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- Improved performance of index scans for IVFFlat after updates and deletes
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- Fixed locking for index scans for HNSW
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## 0.5.0 (2023-08-28)
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2
Makefile
2
Makefile
@@ -3,7 +3,7 @@ EXTVERSION = 0.5.0
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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OBJS = src/float4.o src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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HEADERS = src/vector.h
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TESTS = $(wildcard test/sql/*.sql)
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@@ -1,7 +1,7 @@
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EXTENSION = vector
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EXTVERSION = 0.5.0
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OBJS = src\float4.obj src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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@@ -34,9 +34,6 @@ CREATE TYPE vector (
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CREATE FUNCTION l2_distance(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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CREATE FUNCTION l2_distance(float4[], float4[]) RETURNS float8
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AS 'MODULE_PATHNAME', 'float4_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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CREATE FUNCTION inner_product(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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@@ -87,9 +84,6 @@ CREATE FUNCTION vector_cmp(vector, vector) RETURNS int4
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CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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@@ -170,11 +164,6 @@ CREATE OPERATOR <-> (
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COMMUTATOR = '<->'
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);
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CREATE OPERATOR <-> (
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LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = l2_distance,
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COMMUTATOR = '<->'
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);
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CREATE OPERATOR <#> (
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LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product,
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COMMUTATOR = '<#>'
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@@ -291,11 +280,6 @@ CREATE OPERATOR CLASS vector_l2_ops
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OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops,
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FUNCTION 1 vector_l2_squared_distance(vector, vector);
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CREATE OPERATOR CLASS float4_l2_ops
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FOR TYPE float4[] USING hnsw AS
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OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
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FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
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CREATE OPERATOR CLASS vector_ip_ops
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FOR TYPE vector USING hnsw AS
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OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops,
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60
src/float4.c
60
src/float4.c
@@ -1,60 +0,0 @@
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#include "postgres.h"
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#include <math.h>
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#include "utils/array.h"
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/*
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* Get the L2 distance between vectors
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*/
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PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_distance);
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Datum
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float4_l2_distance(PG_FUNCTION_ARGS)
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{
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ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
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ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
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float *ax = (float *) ARR_DATA_PTR(a);
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float *bx = (float *) ARR_DATA_PTR(b);
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float distance = 0.0;
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float diff;
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/* TODO Check rank, dimensions, and nulls */
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int dim = ARR_DIMS(a)[0];
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/* Auto-vectorized */
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for (int i = 0; i < dim; i++)
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{
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diff = ax[i] - bx[i];
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distance += diff * diff;
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}
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PG_RETURN_FLOAT8(sqrt((double) distance));
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}
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/*
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* Get the L2 squared distance between vectors
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* This saves a sqrt calculation
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*/
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PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_squared_distance);
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Datum
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float4_l2_squared_distance(PG_FUNCTION_ARGS)
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{
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ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
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ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
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float *ax = (float *) ARR_DATA_PTR(a);
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float *bx = (float *) ARR_DATA_PTR(b);
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float distance = 0.0;
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float diff;
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/* TODO Check rank, dimensions, and nulls */
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int dim = ARR_DIMS(a)[0];
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/* Auto-vectorized */
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for (int i = 0; i < dim; i++)
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{
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diff = ax[i] - bx[i];
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distance += diff * diff;
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}
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PG_RETURN_FLOAT8((double) distance);
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}
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@@ -33,12 +33,6 @@ HnswInit(void)
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HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
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#if PG_VERSION_NUM >= 130000
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,AccessExclusiveLock
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#endif
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);
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add_int_reloption(hnsw_relopt_kind, "dimensions", "Number of dimensions",
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HNSW_DEFAULT_DIMENSIONS, HNSW_MIN_DIMENSIONS, HNSW_MAX_DIMENSIONS
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#if PG_VERSION_NUM >= 130000
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,AccessExclusiveLock
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#endif
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);
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@@ -131,7 +125,6 @@ hnswoptions(Datum reloptions, bool validate)
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static const relopt_parse_elt tab[] = {
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{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
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{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
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{"dimensions", RELOPT_TYPE_INT, offsetof(HnswOptions, dimensions)},
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};
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#if PG_VERSION_NUM >= 130000
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14
src/hnsw.h
14
src/hnsw.h
@@ -42,9 +42,6 @@
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#define HNSW_DEFAULT_EF_SEARCH 40
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#define HNSW_MIN_EF_SEARCH 1
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#define HNSW_MAX_EF_SEARCH 1000
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#define HNSW_DEFAULT_DIMENSIONS -1
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#define HNSW_MIN_DIMENSIONS 1
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#define HNSW_MAX_DIMENSIONS HNSW_MAX_DIM
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/* Tuple types */
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#define HNSW_ELEMENT_TUPLE_TYPE 1
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@@ -60,7 +57,7 @@
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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#define PROGRESS_HNSW_PHASE_LOAD 2
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#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
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@@ -99,13 +96,12 @@ typedef struct HnswElementData
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List *heaptids;
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uint8 level;
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uint8 deleted;
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bool loaded;
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HnswNeighborArray *neighbors;
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BlockNumber blkno;
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OffsetNumber offno;
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OffsetNumber neighborOffno;
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BlockNumber neighborPage;
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Datum value;
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Vector *vec;
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} HnswElementData;
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typedef HnswElementData * HnswElement;
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@@ -114,11 +110,13 @@ typedef struct HnswCandidate
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{
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HnswElement element;
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float distance;
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bool closer;
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} HnswCandidate;
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typedef struct HnswNeighborArray
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{
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int length;
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bool closerSet;
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HnswCandidate *items;
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} HnswNeighborArray;
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@@ -134,7 +132,6 @@ typedef struct HnswOptions
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int32 vl_len_; /* varlena header (do not touch directly!) */
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int m; /* number of connections */
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int efConstruction; /* size of dynamic candidate list */
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int dimensions;
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} HnswOptions;
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typedef struct HnswBuildState
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@@ -205,7 +202,7 @@ typedef struct HnswElementTupleData
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ItemPointerData heaptids[HNSW_HEAPTIDS];
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ItemPointerData neighbortid;
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uint16 unused2;
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char value[FLEXIBLE_ARRAY_MEMBER];
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Vector vec;
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} HnswElementTupleData;
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typedef HnswElementTupleData * HnswElementTuple;
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@@ -263,7 +260,6 @@ typedef struct HnswVacuumState
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/* Methods */
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int HnswGetM(Relation index);
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int HnswGetEfConstruction(Relation index);
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int HnswGetDimensions(Relation index);
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FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
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bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
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void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
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@@ -8,7 +8,6 @@
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#include "lib/pairingheap.h"
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#include "nodes/pg_list.h"
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#include "storage/bufmgr.h"
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#include "utils/datum.h"
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#include "utils/memutils.h"
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#if PG_VERSION_NUM >= 140000
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@@ -82,7 +81,6 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
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HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
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/* Commit */
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MarkBufferDirty(*buf);
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GenericXLogFinish(*state);
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UnlockReleaseBuffer(*buf);
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@@ -107,6 +105,8 @@ CreateElementPages(HnswBuildState * buildstate)
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{
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Relation index = buildstate->index;
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ForkNumber forkNum = buildstate->forkNum;
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int dimensions = buildstate->dimensions;
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Size etupSize;
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Size maxSize;
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HnswElementTuple etup;
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HnswNeighborTuple ntup;
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@@ -118,9 +118,10 @@ CreateElementPages(HnswBuildState * buildstate)
|
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|
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/* Calculate sizes */
|
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maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
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|
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/* Allocate once */
|
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etup = palloc0(maxSize);
|
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etup = palloc0(etupSize);
|
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ntup = palloc0(maxSize);
|
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|
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/* Prepare first page */
|
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@@ -132,14 +133,12 @@ CreateElementPages(HnswBuildState * buildstate)
|
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foreach(lc, buildstate->elements)
|
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{
|
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HnswElement element = lfirst(lc);
|
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Size etupSize;
|
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Size ntupSize;
|
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Size combinedSize;
|
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|
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HnswSetElementTuple(etup, element);
|
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|
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/* Calculate sizes */
|
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
|
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ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
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combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
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|
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@@ -179,7 +178,6 @@ CreateElementPages(HnswBuildState * buildstate)
|
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insertPage = BufferGetBlockNumber(buf);
|
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|
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/* Commit */
|
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MarkBufferDirty(buf);
|
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GenericXLogFinish(state);
|
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UnlockReleaseBuffer(buf);
|
||||
|
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@@ -227,7 +225,6 @@ CreateNeighborPages(HnswBuildState * buildstate)
|
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elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
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|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
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UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -276,15 +273,18 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
|
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int m = buildstate->m;
|
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|
||||
/* Detoast once for all calls */
|
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element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
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Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||
|
||||
/* Normalize if needed */
|
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if (buildstate->normprocinfo != NULL)
|
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{
|
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if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
|
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if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
|
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return false;
|
||||
}
|
||||
|
||||
/* Copy value to element so accessible outside of memory context */
|
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memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Insert element in graph */
|
||||
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
||||
|
||||
@@ -360,6 +360,7 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Allocate necessary memory outside of memory context */
|
||||
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
||||
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
|
||||
|
||||
/* Use memory context since detoast can allocate */
|
||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||
@@ -367,8 +368,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
/* Insert tuple */
|
||||
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
||||
|
||||
/* Switch memory context */
|
||||
/* Reset memory context */
|
||||
MemoryContextSwitchTo(oldCtx);
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
|
||||
/* Add outside memory context */
|
||||
if (dup != NULL)
|
||||
@@ -376,16 +378,9 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
||||
|
||||
/* Add to buildstate or free */
|
||||
if (inserted)
|
||||
{
|
||||
element->value = datumCopy(element->value, false, -1);
|
||||
element->loaded = true;
|
||||
buildstate->elements = lappend(buildstate->elements, element);
|
||||
}
|
||||
else
|
||||
HnswFreeElement(element);
|
||||
|
||||
/* Reset memory context */
|
||||
MemoryContextReset(buildstate->tmpCtx);
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -400,7 +395,6 @@ HnswGetMaxInMemoryElements(int m, double ml, int dimensions)
|
||||
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
|
||||
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
|
||||
elementSize += sizeof(ItemPointerData);
|
||||
/* TODO Handle non-vector types */
|
||||
elementSize += VECTOR_SIZE(dimensions);
|
||||
return (maintenance_work_mem * 1024L) / elementSize;
|
||||
}
|
||||
@@ -418,10 +412,7 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
||||
|
||||
buildstate->m = HnswGetM(index);
|
||||
buildstate->efConstruction = HnswGetEfConstruction(index);
|
||||
buildstate->dimensions = HnswGetDimensions(index);
|
||||
|
||||
if (buildstate->dimensions < 0)
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||
|
||||
/* Require column to have dimensions to be indexed */
|
||||
if (buildstate->dimensions < 0)
|
||||
|
||||
@@ -123,6 +123,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
Size minCombinedSize;
|
||||
HnswElementTuple etup;
|
||||
BlockNumber currentPage = insertPage;
|
||||
int dimensions = e->vec->dim;
|
||||
HnswNeighborTuple ntup;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
@@ -131,7 +132,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||
@@ -201,8 +202,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
@@ -269,9 +268,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
||||
}
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
if (nbuf != buf)
|
||||
@@ -390,7 +386,6 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
@@ -410,7 +405,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
||||
HnswElementTuple etup;
|
||||
int i;
|
||||
|
||||
@@ -444,7 +439,6 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -521,7 +515,7 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
||||
|
||||
/* Create an element */
|
||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||
element->value = value;
|
||||
element->vec = DatumGetVector(value);
|
||||
|
||||
/* Prevent concurrent inserts when likely updating entry point */
|
||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||
|
||||
@@ -113,12 +113,6 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
||||
|
||||
scan->opaque = so;
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
return scan;
|
||||
}
|
||||
|
||||
@@ -169,8 +163,17 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
||||
/* Get scan value */
|
||||
value = GetScanValue(scan);
|
||||
|
||||
/*
|
||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||
* before marking tuples as deleted.
|
||||
*/
|
||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
so->w = GetScanItems(scan, value);
|
||||
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
so->first = false;
|
||||
}
|
||||
|
||||
@@ -223,9 +226,6 @@ hnswendscan(IndexScanDesc scan)
|
||||
{
|
||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||
|
||||
/* Release shared lock */
|
||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||
|
||||
MemoryContextDelete(so->tmpCtx);
|
||||
|
||||
pfree(so);
|
||||
|
||||
@@ -4,7 +4,6 @@
|
||||
|
||||
#include "hnsw.h"
|
||||
#include "storage/bufmgr.h"
|
||||
#include "utils/datum.h"
|
||||
#include "vector.h"
|
||||
|
||||
/*
|
||||
@@ -35,20 +34,6 @@ HnswGetEfConstruction(Relation index)
|
||||
return HNSW_DEFAULT_EF_CONSTRUCTION;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get the number of dimensions in the index
|
||||
*/
|
||||
int
|
||||
HnswGetDimensions(Relation index)
|
||||
{
|
||||
HnswOptions *opts = (HnswOptions *) index->rd_options;
|
||||
|
||||
if (opts)
|
||||
return opts->dimensions;
|
||||
|
||||
return HNSW_DEFAULT_DIMENSIONS;
|
||||
}
|
||||
|
||||
/*
|
||||
* Get proc
|
||||
*/
|
||||
@@ -132,7 +117,6 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
||||
void
|
||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -155,6 +139,7 @@ HnswInitNeighbors(HnswElement element, int m)
|
||||
a = &element->neighbors[lc];
|
||||
a->length = 0;
|
||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||
a->closerSet = false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -202,8 +187,7 @@ HnswFreeElement(HnswElement element)
|
||||
{
|
||||
HnswFreeNeighbors(element);
|
||||
list_free_deep(element->heaptids);
|
||||
if (element->loaded)
|
||||
pfree(DatumGetPointer(element->value));
|
||||
pfree(element->vec);
|
||||
pfree(element);
|
||||
}
|
||||
|
||||
@@ -230,7 +214,7 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
||||
element->blkno = blkno;
|
||||
element->offno = offno;
|
||||
element->neighbors = NULL;
|
||||
element->loaded = false;
|
||||
element->vec = NULL;
|
||||
return element;
|
||||
}
|
||||
|
||||
@@ -340,7 +324,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
||||
else
|
||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||
}
|
||||
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
||||
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -463,10 +447,8 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
||||
|
||||
if (loadVec)
|
||||
{
|
||||
Datum value = PointerGetDatum(&etup->value);
|
||||
|
||||
element->value = datumCopy(value, false, -1);
|
||||
element->loaded = true;
|
||||
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
||||
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -494,7 +476,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
|
||||
/* Calculate distance */
|
||||
if (distance != NULL)
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
||||
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -505,7 +487,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
||||
static float
|
||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||
{
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -740,7 +722,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
||||
}
|
||||
}
|
||||
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
||||
}
|
||||
|
||||
/*
|
||||
@@ -767,11 +749,13 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
||||
* Algorithm 4 from paper
|
||||
*/
|
||||
static List *
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned)
|
||||
{
|
||||
List *r = NIL;
|
||||
List *w = list_copy(c);
|
||||
pairingheap *wd;
|
||||
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
||||
bool foundNew = false;
|
||||
|
||||
if (list_length(w) <= m)
|
||||
return w;
|
||||
@@ -782,18 +766,40 @@ SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswC
|
||||
{
|
||||
/* Assumes w is already ordered desc */
|
||||
HnswCandidate *e = llast(w);
|
||||
bool closer;
|
||||
|
||||
w = list_delete_last(w);
|
||||
|
||||
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
/* Use previous state of r and wd to skip work when possible */
|
||||
if (mustCalculate)
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
else if (foundNew)
|
||||
{
|
||||
/* If new or current candidate is not closer, no change in state */
|
||||
if (newCandidate->closer && e->closer)
|
||||
{
|
||||
/* Only need to compare with new candidate */
|
||||
float distance = HnswGetDistance(e->element, newCandidate->element, lc, procinfo, collation);
|
||||
|
||||
if (closer)
|
||||
e->closer = e->distance < distance;
|
||||
|
||||
if (!e->closer)
|
||||
mustCalculate = true;
|
||||
}
|
||||
}
|
||||
else if (e == newCandidate)
|
||||
{
|
||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||
foundNew = true;
|
||||
}
|
||||
|
||||
if (e->closer)
|
||||
r = lappend(r, e);
|
||||
else
|
||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||
}
|
||||
|
||||
e2->neighbors[lc].closerSet = true;
|
||||
|
||||
/* Keep pruned connections */
|
||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||
@@ -823,7 +829,7 @@ HnswFindDuplicate(HnswElement e)
|
||||
HnswCandidate *neighbor = &neighbors->items[i];
|
||||
|
||||
/* Exit early since ordered by distance */
|
||||
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
||||
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
||||
break;
|
||||
|
||||
/* Check for space */
|
||||
@@ -898,13 +904,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
/* Load elements on insert */
|
||||
if (index != NULL)
|
||||
{
|
||||
Datum q = hc->element->value;
|
||||
Datum q = PointerGetDatum(hc->element->vec);
|
||||
|
||||
for (int i = 0; i < currentNeighbors->length; i++)
|
||||
{
|
||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||
|
||||
if (!hc3->element->loaded)
|
||||
if (hc3->element->vec == NULL)
|
||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||
else
|
||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||
@@ -928,7 +934,7 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
||||
c = lappend(c, &hc2);
|
||||
list_sort(c, CompareCandidateDistances);
|
||||
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
||||
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned);
|
||||
|
||||
/* Should not happen */
|
||||
if (pruned == NULL)
|
||||
@@ -986,7 +992,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
List *w;
|
||||
int level = element->level;
|
||||
int entryLevel;
|
||||
Datum q = element->value;
|
||||
Datum q = PointerGetDatum(element->vec);
|
||||
HnswElement skipElement = existing ? element : NULL;
|
||||
|
||||
/* No neighbors if no entry point */
|
||||
@@ -1027,7 +1033,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
||||
else
|
||||
lw = w;
|
||||
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL);
|
||||
|
||||
AddConnections(element, neighbors, lm, lc);
|
||||
|
||||
|
||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
|
||||
if (itemUpdated)
|
||||
{
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
|
||||
/* Mark rest as invalid */
|
||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||
@@ -128,10 +128,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||
|
||||
if (updated)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
GenericXLogAbort(state);
|
||||
|
||||
@@ -229,7 +226,6 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
|
||||
@@ -485,7 +481,6 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
HnswNeighborTuple ntup;
|
||||
Size etupSize;
|
||||
Size ntupSize;
|
||||
Datum value;
|
||||
Buffer nbuf;
|
||||
Page npage;
|
||||
BlockNumber neighborPage;
|
||||
@@ -509,11 +504,8 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||
continue;
|
||||
|
||||
/* Get datum */
|
||||
value = PointerGetDatum(&etup->value);
|
||||
|
||||
/* Calculate sizes */
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||
|
||||
/* Get neighbor page */
|
||||
@@ -536,7 +528,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
|
||||
/* Overwrite element */
|
||||
etup->deleted = 1;
|
||||
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
||||
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
||||
|
||||
/* Overwrite neighbors */
|
||||
for (int i = 0; i < ntup->count; i++)
|
||||
@@ -551,9 +543,6 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(buf);
|
||||
if (nbuf != buf)
|
||||
MarkBufferDirty(nbuf);
|
||||
GenericXLogFinish(state);
|
||||
if (nbuf != buf)
|
||||
UnlockReleaseBuffer(nbuf);
|
||||
|
||||
@@ -506,9 +506,11 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
Buffer buf;
|
||||
Page page;
|
||||
GenericXLogState *state;
|
||||
Size listSize;
|
||||
IvfflatList list;
|
||||
|
||||
list = palloc0(BLCKSZ);
|
||||
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||
list = palloc(listSize);
|
||||
|
||||
buf = IvfflatNewBuffer(index, forkNum);
|
||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||
@@ -516,13 +518,11 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
||||
for (int i = 0; i < lists; i++)
|
||||
{
|
||||
OffsetNumber offno;
|
||||
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
|
||||
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
|
||||
|
||||
/* Load list */
|
||||
list->startPage = InvalidBlockNumber;
|
||||
list->insertPage = InvalidBlockNumber;
|
||||
memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
|
||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||
|
||||
/* Ensure free space */
|
||||
if (PageGetFreeSpace(page) < listSize)
|
||||
|
||||
@@ -52,7 +52,7 @@
|
||||
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
||||
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
||||
|
||||
#define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
|
||||
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim))
|
||||
|
||||
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
||||
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
||||
@@ -229,7 +229,7 @@ typedef struct IvfflatListData
|
||||
{
|
||||
BlockNumber startPage;
|
||||
BlockNumber insertPage;
|
||||
char center[FLEXIBLE_ARRAY_MEMBER];
|
||||
Vector center;
|
||||
} IvfflatListData;
|
||||
|
||||
typedef IvfflatListData * IvfflatList;
|
||||
|
||||
@@ -142,8 +142,6 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(newbuf);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
|
||||
/* Unlock previous buffer */
|
||||
|
||||
@@ -136,7 +136,6 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
||||
void
|
||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||
{
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
UnlockReleaseBuffer(buf);
|
||||
}
|
||||
@@ -160,8 +159,6 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
||||
IvfflatInitPage(newbuf, newpage);
|
||||
|
||||
/* Commit */
|
||||
MarkBufferDirty(*buf);
|
||||
MarkBufferDirty(newbuf);
|
||||
GenericXLogFinish(*state);
|
||||
|
||||
/* Unlock */
|
||||
|
||||
@@ -107,7 +107,6 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
||||
{
|
||||
/* Delete tuples */
|
||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||
MarkBufferDirty(buf);
|
||||
GenericXLogFinish(state);
|
||||
}
|
||||
else
|
||||
|
||||
@@ -54,21 +54,21 @@ SELECT vector_norm('[3e37,4e37]')::real;
|
||||
5e+37
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||
SELECT l2_distance('[0,0]', '[3,4]');
|
||||
l2_distance
|
||||
-------------
|
||||
5
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||
SELECT l2_distance('[0,0]', '[0,1]');
|
||||
l2_distance
|
||||
-------------
|
||||
1
|
||||
(1 row)
|
||||
|
||||
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||
SELECT l2_distance('[1,2]', '[3]');
|
||||
ERROR: different vector dimensions 2 and 1
|
||||
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
||||
l2_distance
|
||||
-------------
|
||||
Infinity
|
||||
|
||||
@@ -13,10 +13,10 @@ SELECT vector_norm('[3,4]');
|
||||
SELECT vector_norm('[0,1]');
|
||||
SELECT vector_norm('[3e37,4e37]')::real;
|
||||
|
||||
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||
SELECT l2_distance('[0,0]', '[3,4]');
|
||||
SELECT l2_distance('[0,0]', '[0,1]');
|
||||
SELECT l2_distance('[1,2]', '[3]');
|
||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
||||
|
||||
SELECT inner_product('[1,2]', '[3,4]');
|
||||
SELECT inner_product('[1,2]', '[3]');
|
||||
|
||||
@@ -1,93 +0,0 @@
|
||||
use strict;
|
||||
use warnings;
|
||||
use PostgresNode;
|
||||
use TestLib;
|
||||
use Test::More;
|
||||
|
||||
my $node;
|
||||
my @queries = ();
|
||||
my @expected;
|
||||
my $limit = 20;
|
||||
|
||||
sub test_recall
|
||||
{
|
||||
my ($min, $operator) = @_;
|
||||
my $correct = 0;
|
||||
my $total = 0;
|
||||
|
||||
my $explain = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||
));
|
||||
like($explain, qr/Index Scan/);
|
||||
|
||||
for my $i (0 .. $#queries)
|
||||
{
|
||||
my $actual = $node->safe_psql("postgres", qq(
|
||||
SET enable_seqscan = off;
|
||||
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||
));
|
||||
my @actual_ids = split("\n", $actual);
|
||||
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||
|
||||
my @expected_ids = split("\n", $expected[$i]);
|
||||
|
||||
foreach (@expected_ids)
|
||||
{
|
||||
if (exists($actual_set{$_}))
|
||||
{
|
||||
$correct++;
|
||||
}
|
||||
$total++;
|
||||
}
|
||||
}
|
||||
|
||||
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||
}
|
||||
|
||||
# Initialize node
|
||||
$node = get_new_node('node');
|
||||
$node->init;
|
||||
$node->start;
|
||||
|
||||
# Create table
|
||||
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
|
||||
$node->safe_psql("postgres",
|
||||
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
|
||||
);
|
||||
|
||||
# Generate queries
|
||||
for (1 .. 20)
|
||||
{
|
||||
my $r1 = rand();
|
||||
my $r2 = rand();
|
||||
my $r3 = rand();
|
||||
push(@queries, "{$r1,$r2,$r3}");
|
||||
}
|
||||
|
||||
# Check each index type
|
||||
my @operators = ("<->");
|
||||
my @opclasses = ("float4_l2_ops");
|
||||
|
||||
for my $i (0 .. $#operators)
|
||||
{
|
||||
my $operator = $operators[$i];
|
||||
my $opclass = $opclasses[$i];
|
||||
|
||||
# Get exact results
|
||||
@expected = ();
|
||||
foreach (@queries)
|
||||
{
|
||||
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
|
||||
push(@expected, $res);
|
||||
}
|
||||
|
||||
# Add index
|
||||
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass) WITH (dimensions = 3);");
|
||||
|
||||
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||
test_recall($min, $operator);
|
||||
}
|
||||
|
||||
done_testing();
|
||||
Reference in New Issue
Block a user