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ae57110f64
Add DataLoader Based on DataHandler & Add Rolling Process Example & Restructure the Config & Setup_data
312 lines
9.2 KiB
Python
312 lines
9.2 KiB
Python
# Copyright (c) Microsoft Corporation.
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# Licensed under the MIT License.
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import abc
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import numpy as np
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import pandas as pd
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import copy
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from ...log import TimeInspector
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from .utils import fetch_df_by_index
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from ...utils.serial import Serializable
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from ...utils.paral import datetime_groupby_apply
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EPS = 1e-12
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def get_group_columns(df: pd.DataFrame, group: str):
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"""
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get a group of columns from multi-index columns DataFrame
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Parameters
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----------
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df : pd.DataFrame
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with multi of columns.
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group : str
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the name of the feature group, i.e. the first level value of the group index.
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"""
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if group is None:
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return df.columns
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else:
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return df.columns[df.columns.get_loc(group)]
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class Processor(Serializable):
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def fit(self, df: pd.DataFrame = None):
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"""
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learn data processing parameters
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Parameters
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----------
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df : pd.DataFrame
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When we fit and process data with processor one by one. The fit function reiles on the output of previous
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processor, i.e. `df`.
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"""
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pass
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@abc.abstractmethod
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def __call__(self, df: pd.DataFrame):
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"""
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process the data
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NOTE: **The processor could change the content of `df` inplace !!!!! **
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User should keep a copy of data outside
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Parameters
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----------
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df : pd.DataFrame
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The raw_df of handler or result from previous processor.
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"""
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pass
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def is_for_infer(self) -> bool:
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"""
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Is this processor usable for inference
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Some processors are not usable for inference.
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Returns
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-------
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bool:
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if it is usable for infenrece.
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"""
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return True
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def config(self, **kwargs):
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attr_list = {"fit_start_time", "fit_end_time"}
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for k, v in kwargs.items():
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if k in attr_list and hasattr(self, k):
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setattr(self, k, v)
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for attr in attr_list:
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if attr in kwargs:
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kwargs.pop(attr)
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super().config(**kwargs)
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class DropnaProcessor(Processor):
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def __init__(self, fields_group=None):
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self.fields_group = fields_group
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def __call__(self, df):
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return df.dropna(subset=get_group_columns(df, self.fields_group))
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class DropnaLabel(DropnaProcessor):
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def __init__(self, fields_group="label"):
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super().__init__(fields_group=fields_group)
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def is_for_infer(self) -> bool:
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"""The samples are dropped according to label. So it is not usable for inference"""
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return False
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class DropCol(Processor):
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def __init__(self, col_list=[]):
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self.col_list = col_list
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def __call__(self, df):
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if isinstance(df.columns, pd.MultiIndex):
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mask = df.columns.get_level_values(-1).isin(self.col_list)
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else:
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mask = df.columns.isin(self.col_list)
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return df.loc[:, ~mask]
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class FilterCol(Processor):
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def __init__(self, fields_group="feature", col_list=[]):
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self.fields_group = fields_group
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self.col_list = col_list
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def __call__(self, df):
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cols = get_group_columns(df, self.fields_group)
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all_cols = df.columns
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diff_cols = np.setdiff1d(all_cols.get_level_values(-1), cols.get_level_values(-1))
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self.col_list = np.union1d(diff_cols, self.col_list)
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mask = df.columns.get_level_values(-1).isin(self.col_list)
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return df.loc[:, mask]
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class TanhProcess(Processor):
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""" Use tanh to process noise data"""
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def __call__(self, df):
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def tanh_denoise(data):
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mask = data.columns.get_level_values(1).str.contains("LABEL")
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col = df.columns[~mask]
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data[col] = data[col] - 1
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data[col] = np.tanh(data[col])
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return data
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return tanh_denoise(df)
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class ProcessInf(Processor):
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"""Process infinity """
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def __call__(self, df):
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def replace_inf(data):
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def process_inf(df):
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for col in df.columns:
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# FIXME: Such behavior is very weird
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df[col] = df[col].replace([np.inf, -np.inf], df[col][~np.isinf(df[col])].mean())
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return df
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data = datetime_groupby_apply(data, process_inf)
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data.sort_index(inplace=True)
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return data
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return replace_inf(df)
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class Fillna(Processor):
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"""Process NaN"""
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def __init__(self, fields_group=None, fill_value=0):
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self.fields_group = fields_group
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self.fill_value = fill_value
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def __call__(self, df):
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if self.fields_group is None:
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df.fillna(self.fill_value, inplace=True)
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else:
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cols = get_group_columns(df, self.fields_group)
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df.fillna({col: self.fill_value for col in cols}, inplace=True)
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return df
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class MinMaxNorm(Processor):
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def __init__(self, fit_start_time, fit_end_time, fields_group=None):
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self.fit_start_time = fit_start_time
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self.fit_end_time = fit_end_time
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self.fields_group = fields_group
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def fit(self, df):
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df = fetch_df_by_index(df, slice(self.fit_start_time, self.fit_end_time), level="datetime")
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cols = get_group_columns(df, self.fields_group)
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self.min_val = np.nanmin(df[cols].values, axis=0)
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self.max_val = np.nanmax(df[cols].values, axis=0)
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self.ignore = self.min_val == self.max_val
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self.cols = cols
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def __call__(self, df):
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def normalize(x, min_val=self.min_val, max_val=self.max_val, ignore=self.ignore):
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if (~ignore).all():
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return (x - min_val) / (max_val - min_val)
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for i in range(ignore.size):
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if not ignore[i]:
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x[i] = (x[i] - min_val) / (max_val - min_val)
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return x
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df.loc(axis=1)[self.cols] = normalize(df[self.cols].values)
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return df
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class ZScoreNorm(Processor):
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"""ZScore Normalization"""
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def __init__(self, fit_start_time, fit_end_time, fields_group=None):
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self.fit_start_time = fit_start_time
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self.fit_end_time = fit_end_time
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self.fields_group = fields_group
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def fit(self, df):
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df = fetch_df_by_index(df, slice(self.fit_start_time, self.fit_end_time), level="datetime")
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cols = get_group_columns(df, self.fields_group)
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self.mean_train = np.nanmean(df[cols].values, axis=0)
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self.std_train = np.nanstd(df[cols].values, axis=0)
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self.ignore = self.std_train == 0
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self.cols = cols
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def __call__(self, df):
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def normalize(x, mean_train=self.mean_train, std_train=self.std_train, ignore=self.ignore):
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if (~ignore).all():
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return (x - mean_train) / std_train
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for i in range(ignore.size):
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if not ignore[i]:
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x[i] = (x[i] - mean_train) / std_train
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return x
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df.loc(axis=1)[self.cols] = normalize(df[self.cols].values)
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return df
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class RobustZScoreNorm(Processor):
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"""Robust ZScore Normalization
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Use robust statistics for Z-Score normalization:
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mean(x) = median(x)
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std(x) = MAD(x) * 1.4826
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Reference:
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https://en.wikipedia.org/wiki/Median_absolute_deviation.
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"""
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def __init__(self, fit_start_time, fit_end_time, fields_group=None, clip_outlier=True):
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self.fit_start_time = fit_start_time
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self.fit_end_time = fit_end_time
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self.fields_group = fields_group
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self.clip_outlier = clip_outlier
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def fit(self, df):
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df = fetch_df_by_index(df, slice(self.fit_start_time, self.fit_end_time), level="datetime")
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self.cols = get_group_columns(df, self.fields_group)
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X = df[self.cols].values
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self.mean_train = np.nanmedian(X, axis=0)
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self.std_train = np.nanmedian(np.abs(X - self.mean_train), axis=0)
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self.std_train += EPS
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self.std_train *= 1.4826
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def __call__(self, df):
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X = df[self.cols]
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X -= self.mean_train
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X /= self.std_train
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df[self.cols] = X
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if self.clip_outlier:
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df.clip(-3, 3, inplace=True)
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return df
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class CSZScoreNorm(Processor):
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"""Cross Sectional ZScore Normalization"""
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def __init__(self, fields_group=None):
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self.fields_group = fields_group
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def __call__(self, df):
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# try not modify original dataframe
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cols = get_group_columns(df, self.fields_group)
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df[cols] = df[cols].groupby("datetime").apply(lambda x: (x - x.mean()).div(x.std()))
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return df
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class CSRankNorm(Processor):
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"""Cross Sectional Rank Normalization"""
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def __init__(self, fields_group=None):
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self.fields_group = fields_group
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def __call__(self, df):
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# try not modify original dataframe
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cols = get_group_columns(df, self.fields_group)
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t = df[cols].groupby("datetime").rank(pct=True)
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t -= 0.5
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t *= 3.46 # NOTE: towards unit std
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df[cols] = t
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return df
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class CSZFillna(Processor):
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"""Cross Sectional Fill Nan"""
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def __init__(self, fields_group=None):
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self.fields_group = fields_group
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def __call__(self, df):
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cols = get_group_columns(df, self.fields_group)
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df[cols] = df[cols].groupby("datetime").apply(lambda x: x.fillna(x.mean()))
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return df
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