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* Update README.md updated the result of KRNN and Sandwich models based on Alpha360 * Update README.md * Update README.md * Add files via upload * Update README.md * Update README.md * Update README.md * Add files via upload * Delete pytorch_krnn.py * Delete pytorch_sandwich.py * Add files via upload * Update pytorch_sandwich.py * Update pytorch_krnn.py * Update pytorch_sandwich.py * Update pytorch_krnn.py * Update README.md * Update README.md * Update requirements.txt * Update requirements.txt * Update README.md * Update README.md * Update pytorch_sandwich.py * Update link on index --------- Co-authored-by: Young <afe.young@gmail.com>
512 lines
16 KiB
Python
512 lines
16 KiB
Python
# Copyright (c) Microsoft Corporation.
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# Licensed under the MIT License.
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from __future__ import division
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from __future__ import print_function
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import numpy as np
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import pandas as pd
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from typing import Text, Union
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import copy
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from ...utils import get_or_create_path
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from ...log import get_module_logger
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import torch
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import torch.nn as nn
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import torch.optim as optim
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from ...model.base import Model
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from ...data.dataset import DatasetH
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from ...data.dataset.handler import DataHandlerLP
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########################################################################
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########################################################################
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########################################################################
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class CNNEncoderBase(nn.Module):
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def __init__(self, input_dim, output_dim, kernel_size, device):
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"""Build a basic CNN encoder
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Parameters
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----------
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input_dim : int
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The input dimension
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output_dim : int
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The output dimension
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kernel_size : int
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The size of convolutional kernels
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"""
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super().__init__()
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self.input_dim = input_dim
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self.output_dim = output_dim
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self.kernel_size = kernel_size
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self.device = device
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# set padding to ensure the same length
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# it is correct only when kernel_size is odd, dilation is 1, stride is 1
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self.conv = nn.Conv1d(input_dim, output_dim, kernel_size, padding=(kernel_size - 1) // 2)
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def forward(self, x):
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"""
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Parameters
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----------
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x : torch.Tensor
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input data
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Returns
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-------
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torch.Tensor
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Updated representations
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"""
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# input shape: [batch_size, seq_len*input_dim]
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# output shape: [batch_size, seq_len, input_dim]
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x = x.view(x.shape[0], -1, self.input_dim).permute(0, 2, 1).to(self.device)
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y = self.conv(x) # [batch_size, output_dim, conved_seq_len]
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y = y.permute(0, 2, 1) # [batch_size, conved_seq_len, output_dim]
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return y
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class KRNNEncoderBase(nn.Module):
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def __init__(self, input_dim, output_dim, dup_num, rnn_layers, dropout, device):
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"""Build K parallel RNNs
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Parameters
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----------
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input_dim : int
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The input dimension
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output_dim : int
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The output dimension
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dup_num : int
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The number of parallel RNNs
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rnn_layers: int
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The number of RNN layers
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"""
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super().__init__()
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self.input_dim = input_dim
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self.output_dim = output_dim
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self.dup_num = dup_num
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self.rnn_layers = rnn_layers
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self.dropout = dropout
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self.device = device
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self.rnn_modules = nn.ModuleList()
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for _ in range(dup_num):
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self.rnn_modules.append(nn.GRU(input_dim, output_dim, num_layers=self.rnn_layers, dropout=dropout))
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def forward(self, x):
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"""
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Parameters
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----------
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x : torch.Tensor
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Input data
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n_id : torch.Tensor
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Node indices
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Returns
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-------
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torch.Tensor
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Updated representations
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"""
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# input shape: [batch_size, seq_len, input_dim]
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# output shape: [batch_size, seq_len, output_dim]
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# [seq_len, batch_size, input_dim]
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batch_size, seq_len, input_dim = x.shape
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x = x.permute(1, 0, 2).to(self.device)
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hids = []
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for rnn in self.rnn_modules:
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h, _ = rnn(x) # [seq_len, batch_size, output_dim]
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hids.append(h)
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# [seq_len, batch_size, output_dim, num_dups]
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hids = torch.stack(hids, dim=-1)
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hids = hids.view(seq_len, batch_size, self.output_dim, self.dup_num)
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hids = hids.mean(dim=3)
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hids = hids.permute(1, 0, 2)
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return hids
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class CNNKRNNEncoder(nn.Module):
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def __init__(
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self, cnn_input_dim, cnn_output_dim, cnn_kernel_size, rnn_output_dim, rnn_dup_num, rnn_layers, dropout, device
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):
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"""Build an encoder composed of CNN and KRNN
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Parameters
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----------
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cnn_input_dim : int
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The input dimension of CNN
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cnn_output_dim : int
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The output dimension of CNN
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cnn_kernel_size : int
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The size of convolutional kernels
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rnn_output_dim : int
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The output dimension of KRNN
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rnn_dup_num : int
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The number of parallel duplicates for KRNN
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rnn_layers : int
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The number of RNN layers
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"""
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super().__init__()
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self.cnn_encoder = CNNEncoderBase(cnn_input_dim, cnn_output_dim, cnn_kernel_size, device)
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self.krnn_encoder = KRNNEncoderBase(cnn_output_dim, rnn_output_dim, rnn_dup_num, rnn_layers, dropout, device)
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def forward(self, x):
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"""
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Parameters
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----------
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x : torch.Tensor
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Input data
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n_id : torch.Tensor
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Node indices
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Returns
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-------
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torch.Tensor
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Updated representations
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"""
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cnn_out = self.cnn_encoder(x)
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krnn_out = self.krnn_encoder(cnn_out)
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return krnn_out
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class KRNNModel(nn.Module):
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def __init__(self, fea_dim, cnn_dim, cnn_kernel_size, rnn_dim, rnn_dups, rnn_layers, dropout, device, **params):
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"""Build a KRNN model
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Parameters
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----------
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fea_dim : int
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The feature dimension
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cnn_dim : int
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The hidden dimension of CNN
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cnn_kernel_size : int
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The size of convolutional kernels
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rnn_dim : int
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The hidden dimension of KRNN
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rnn_dups : int
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The number of parallel duplicates
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rnn_layers: int
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The number of RNN layers
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"""
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super().__init__()
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self.encoder = CNNKRNNEncoder(
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cnn_input_dim=fea_dim,
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cnn_output_dim=cnn_dim,
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cnn_kernel_size=cnn_kernel_size,
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rnn_output_dim=rnn_dim,
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rnn_dup_num=rnn_dups,
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rnn_layers=rnn_layers,
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dropout=dropout,
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device=device,
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)
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self.out_fc = nn.Linear(rnn_dim, 1)
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self.device = device
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def forward(self, x):
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# x: [batch_size, node_num, seq_len, input_dim]
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encode = self.encoder(x)
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out = self.out_fc(encode[:, -1, :]).squeeze().to(self.device)
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return out
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class KRNN(Model):
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"""KRNN Model
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Parameters
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----------
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d_feat : int
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input dimension for each time step
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metric: str
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the evaluation metric used in early stop
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optimizer : str
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optimizer name
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GPU : str
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the GPU ID(s) used for training
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"""
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def __init__(
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self,
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fea_dim=6,
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cnn_dim=64,
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cnn_kernel_size=3,
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rnn_dim=64,
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rnn_dups=3,
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rnn_layers=2,
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dropout=0,
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n_epochs=200,
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lr=0.001,
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metric="",
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batch_size=2000,
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early_stop=20,
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loss="mse",
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optimizer="adam",
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GPU=0,
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seed=None,
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**kwargs
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):
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# Set logger.
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self.logger = get_module_logger("KRNN")
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self.logger.info("KRNN pytorch version...")
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# set hyper-parameters.
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self.fea_dim = fea_dim
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self.cnn_dim = cnn_dim
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self.cnn_kernel_size = cnn_kernel_size
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self.rnn_dim = rnn_dim
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self.rnn_dups = rnn_dups
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self.rnn_layers = rnn_layers
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self.dropout = dropout
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self.n_epochs = n_epochs
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self.lr = lr
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self.metric = metric
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self.batch_size = batch_size
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self.early_stop = early_stop
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self.optimizer = optimizer.lower()
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self.loss = loss
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self.device = torch.device("cuda:%d" % (GPU) if torch.cuda.is_available() and GPU >= 0 else "cpu")
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self.seed = seed
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self.logger.info(
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"KRNN parameters setting:"
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"\nfea_dim : {}"
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"\ncnn_dim : {}"
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"\ncnn_kernel_size : {}"
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"\nrnn_dim : {}"
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"\nrnn_dups : {}"
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"\nrnn_layers : {}"
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"\ndropout : {}"
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"\nn_epochs : {}"
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"\nlr : {}"
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"\nmetric : {}"
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"\nbatch_size: {}"
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"\nearly_stop : {}"
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"\noptimizer : {}"
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"\nloss_type : {}"
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"\nvisible_GPU : {}"
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"\nuse_GPU : {}"
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"\nseed : {}".format(
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fea_dim,
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cnn_dim,
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cnn_kernel_size,
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rnn_dim,
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rnn_dups,
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rnn_layers,
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dropout,
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n_epochs,
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lr,
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metric,
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batch_size,
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early_stop,
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optimizer.lower(),
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loss,
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GPU,
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self.use_gpu,
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seed,
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)
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)
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if self.seed is not None:
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np.random.seed(self.seed)
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torch.manual_seed(self.seed)
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self.krnn_model = KRNNModel(
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fea_dim=self.fea_dim,
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cnn_dim=self.cnn_dim,
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cnn_kernel_size=self.cnn_kernel_size,
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rnn_dim=self.rnn_dim,
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rnn_dups=self.rnn_dups,
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rnn_layers=self.rnn_layers,
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dropout=self.dropout,
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device=self.device,
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)
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if optimizer.lower() == "adam":
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self.train_optimizer = optim.Adam(self.krnn_model.parameters(), lr=self.lr)
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elif optimizer.lower() == "gd":
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self.train_optimizer = optim.SGD(self.krnn_model.parameters(), lr=self.lr)
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else:
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raise NotImplementedError("optimizer {} is not supported!".format(optimizer))
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self.fitted = False
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self.krnn_model.to(self.device)
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@property
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def use_gpu(self):
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return self.device != torch.device("cpu")
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def mse(self, pred, label):
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loss = (pred - label) ** 2
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return torch.mean(loss)
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def loss_fn(self, pred, label):
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mask = ~torch.isnan(label)
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if self.loss == "mse":
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return self.mse(pred[mask], label[mask])
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raise ValueError("unknown loss `%s`" % self.loss)
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def metric_fn(self, pred, label):
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mask = torch.isfinite(label)
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if self.metric in ("", "loss"):
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return -self.loss_fn(pred[mask], label[mask])
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raise ValueError("unknown metric `%s`" % self.metric)
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def get_daily_inter(self, df, shuffle=False):
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# organize the train data into daily batches
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daily_count = df.groupby(level=0).size().values
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daily_index = np.roll(np.cumsum(daily_count), 1)
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daily_index[0] = 0
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if shuffle:
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# shuffle data
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daily_shuffle = list(zip(daily_index, daily_count))
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np.random.shuffle(daily_shuffle)
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daily_index, daily_count = zip(*daily_shuffle)
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return daily_index, daily_count
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def train_epoch(self, x_train, y_train):
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x_train_values = x_train.values
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y_train_values = np.squeeze(y_train.values)
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self.krnn_model.train()
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indices = np.arange(len(x_train_values))
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np.random.shuffle(indices)
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for i in range(len(indices))[:: self.batch_size]:
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if len(indices) - i < self.batch_size:
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break
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feature = torch.from_numpy(x_train_values[indices[i : i + self.batch_size]]).float().to(self.device)
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label = torch.from_numpy(y_train_values[indices[i : i + self.batch_size]]).float().to(self.device)
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pred = self.krnn_model(feature)
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loss = self.loss_fn(pred, label)
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self.train_optimizer.zero_grad()
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loss.backward()
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torch.nn.utils.clip_grad_value_(self.krnn_model.parameters(), 3.0)
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self.train_optimizer.step()
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def test_epoch(self, data_x, data_y):
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# prepare training data
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x_values = data_x.values
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y_values = np.squeeze(data_y.values)
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self.krnn_model.eval()
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scores = []
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losses = []
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indices = np.arange(len(x_values))
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for i in range(len(indices))[:: self.batch_size]:
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if len(indices) - i < self.batch_size:
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break
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feature = torch.from_numpy(x_values[indices[i : i + self.batch_size]]).float().to(self.device)
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label = torch.from_numpy(y_values[indices[i : i + self.batch_size]]).float().to(self.device)
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pred = self.krnn_model(feature)
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loss = self.loss_fn(pred, label)
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losses.append(loss.item())
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score = self.metric_fn(pred, label)
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scores.append(score.item())
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return np.mean(losses), np.mean(scores)
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def fit(
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self,
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dataset: DatasetH,
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evals_result=dict(),
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save_path=None,
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):
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df_train, df_valid, df_test = dataset.prepare(
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["train", "valid", "test"],
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col_set=["feature", "label"],
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data_key=DataHandlerLP.DK_L,
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)
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if df_train.empty or df_valid.empty:
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raise ValueError("Empty data from dataset, please check your dataset config.")
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x_train, y_train = df_train["feature"], df_train["label"]
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x_valid, y_valid = df_valid["feature"], df_valid["label"]
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save_path = get_or_create_path(save_path)
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stop_steps = 0
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train_loss = 0
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best_score = -np.inf
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best_epoch = 0
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evals_result["train"] = []
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evals_result["valid"] = []
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# train
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self.logger.info("training...")
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self.fitted = True
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for step in range(self.n_epochs):
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self.logger.info("Epoch%d:", step)
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self.logger.info("training...")
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self.train_epoch(x_train, y_train)
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self.logger.info("evaluating...")
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train_loss, train_score = self.test_epoch(x_train, y_train)
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val_loss, val_score = self.test_epoch(x_valid, y_valid)
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self.logger.info("train %.6f, valid %.6f" % (train_score, val_score))
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evals_result["train"].append(train_score)
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evals_result["valid"].append(val_score)
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if val_score > best_score:
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best_score = val_score
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stop_steps = 0
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best_epoch = step
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best_param = copy.deepcopy(self.krnn_model.state_dict())
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else:
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stop_steps += 1
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if stop_steps >= self.early_stop:
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self.logger.info("early stop")
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break
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self.logger.info("best score: %.6lf @ %d" % (best_score, best_epoch))
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self.krnn_model.load_state_dict(best_param)
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torch.save(best_param, save_path)
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if self.use_gpu:
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torch.cuda.empty_cache()
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def predict(self, dataset: DatasetH, segment: Union[Text, slice] = "test"):
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if not self.fitted:
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raise ValueError("model is not fitted yet!")
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x_test = dataset.prepare(segment, col_set="feature", data_key=DataHandlerLP.DK_I)
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index = x_test.index
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self.krnn_model.eval()
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x_values = x_test.values
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sample_num = x_values.shape[0]
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preds = []
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for begin in range(sample_num)[:: self.batch_size]:
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if sample_num - begin < self.batch_size:
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end = sample_num
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else:
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end = begin + self.batch_size
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x_batch = torch.from_numpy(x_values[begin:end]).float().to(self.device)
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with torch.no_grad():
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pred = self.krnn_model(x_batch).detach().cpu().numpy()
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preds.append(pred)
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return pd.Series(np.concatenate(preds), index=index)
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