mirror of
https://github.com/pgvector/pgvector.git
synced 2026-07-22 12:07:34 +08:00
Compare commits
53 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
2b125a1956 | ||
|
|
fcd655d2a3 | ||
|
|
97fe28940d | ||
|
|
23c5bf6ef6 | ||
|
|
9ed4303a5e | ||
|
|
acd066463a | ||
|
|
be936075eb | ||
|
|
a9959fede2 | ||
|
|
02c4f4884c | ||
|
|
791fc2436f | ||
|
|
e7a7936bb2 | ||
|
|
ce2ba65906 | ||
|
|
023633a274 | ||
|
|
9baa051b5b | ||
|
|
ac94ac7cf1 | ||
|
|
8b819dfdc2 | ||
|
|
d9ca850faf | ||
|
|
131782999b | ||
|
|
d57ef873c2 | ||
|
|
30c86fb05a | ||
|
|
833f379ebe | ||
|
|
709fc75ce0 | ||
|
|
2bc959b3eb | ||
|
|
ec9e13b5fb | ||
|
|
95e476d570 | ||
|
|
6bc0c47a0a | ||
|
|
58eeefeef4 | ||
|
|
263e684824 | ||
|
|
21dfed5719 | ||
|
|
f3aec9fd03 | ||
|
|
31e41b3ba9 | ||
|
|
903a925662 | ||
|
|
96ff19be44 | ||
|
|
6c969bebad | ||
|
|
b64a1482d9 | ||
|
|
a5f2d70bc2 | ||
|
|
f3fcb5e005 | ||
|
|
3a6e0afb9c | ||
|
|
183d50bdbd | ||
|
|
bd776fee68 | ||
|
|
d30b113e4b | ||
|
|
fd3200f718 | ||
|
|
02c815d876 | ||
|
|
4b2a7cc49d | ||
|
|
da0ff998e9 | ||
|
|
cb36e24289 | ||
|
|
b1d0d4c7a3 | ||
|
|
1dc6514b66 | ||
|
|
6c53f7ca02 | ||
|
|
0d35a14198 | ||
|
|
3ea2ce89be | ||
|
|
62350b1589 | ||
|
|
dd57309281 |
1
.github/workflows/build.yml
vendored
1
.github/workflows/build.yml
vendored
@@ -73,6 +73,7 @@ jobs:
|
|||||||
postgres-version: 14
|
postgres-version: 14
|
||||||
- run: |
|
- run: |
|
||||||
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^
|
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^
|
||||||
|
cd %TEMP% && ^
|
||||||
nmake /NOLOGO /F Makefile.win && ^
|
nmake /NOLOGO /F Makefile.win && ^
|
||||||
nmake /NOLOGO /F Makefile.win install && ^
|
nmake /NOLOGO /F Makefile.win install && ^
|
||||||
nmake /NOLOGO /F Makefile.win installcheck && ^
|
nmake /NOLOGO /F Makefile.win installcheck && ^
|
||||||
|
|||||||
13
CHANGELOG.md
13
CHANGELOG.md
@@ -1,7 +1,18 @@
|
|||||||
|
## 0.7.0 (unreleased)
|
||||||
|
|
||||||
|
- Added support for binary vectors to HNSW
|
||||||
|
- Added `hamming_distance` function
|
||||||
|
- Added `jaccard_distance` function
|
||||||
|
- Added `quantize_binary` function
|
||||||
|
|
||||||
|
## 0.6.2 (2024-03-18)
|
||||||
|
|
||||||
|
- Reduced lock contention with parallel HNSW index builds
|
||||||
|
|
||||||
## 0.6.1 (2024-03-04)
|
## 0.6.1 (2024-03-04)
|
||||||
|
|
||||||
- Fixed error with `ANALYZE` and vectors with different dimensions
|
- Fixed error with `ANALYZE` and vectors with different dimensions
|
||||||
- Fixed error with `shared_preload_libraries`
|
- Fixed segmentation fault with `shared_preload_libraries`
|
||||||
- Fixed vector subtraction being marked as commutative
|
- Fixed vector subtraction being marked as commutative
|
||||||
|
|
||||||
## 0.6.0 (2024-01-29)
|
## 0.6.0 (2024-01-29)
|
||||||
|
|||||||
@@ -2,7 +2,7 @@
|
|||||||
"name": "vector",
|
"name": "vector",
|
||||||
"abstract": "Open-source vector similarity search for Postgres",
|
"abstract": "Open-source vector similarity search for Postgres",
|
||||||
"description": "Supports L2 distance, inner product, and cosine distance",
|
"description": "Supports L2 distance, inner product, and cosine distance",
|
||||||
"version": "0.6.1",
|
"version": "0.6.2",
|
||||||
"maintainer": [
|
"maintainer": [
|
||||||
"Andrew Kane <andrew@ankane.org>"
|
"Andrew Kane <andrew@ankane.org>"
|
||||||
],
|
],
|
||||||
@@ -20,7 +20,7 @@
|
|||||||
"vector": {
|
"vector": {
|
||||||
"file": "sql/vector.sql",
|
"file": "sql/vector.sql",
|
||||||
"docfile": "README.md",
|
"docfile": "README.md",
|
||||||
"version": "0.6.1",
|
"version": "0.6.2",
|
||||||
"abstract": "Open-source vector similarity search for Postgres"
|
"abstract": "Open-source vector similarity search for Postgres"
|
||||||
}
|
}
|
||||||
},
|
},
|
||||||
|
|||||||
4
Makefile
4
Makefile
@@ -1,9 +1,9 @@
|
|||||||
EXTENSION = vector
|
EXTENSION = vector
|
||||||
EXTVERSION = 0.6.1
|
EXTVERSION = 0.6.2
|
||||||
|
|
||||||
MODULE_big = vector
|
MODULE_big = vector
|
||||||
DATA = $(wildcard sql/*--*.sql)
|
DATA = $(wildcard sql/*--*.sql)
|
||||||
OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
|
OBJS = src/bitvector.o src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
|
||||||
HEADERS = src/vector.h
|
HEADERS = src/vector.h
|
||||||
|
|
||||||
TESTS = $(wildcard test/sql/*.sql)
|
TESTS = $(wildcard test/sql/*.sql)
|
||||||
|
|||||||
@@ -1,7 +1,7 @@
|
|||||||
EXTENSION = vector
|
EXTENSION = vector
|
||||||
EXTVERSION = 0.6.1
|
EXTVERSION = 0.6.2
|
||||||
|
|
||||||
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
|
OBJS = src\bitvector.obj src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
|
||||||
HEADERS = src\vector.h
|
HEADERS = src\vector.h
|
||||||
|
|
||||||
REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
|
REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
|
||||||
|
|||||||
165
README.md
165
README.md
@@ -5,7 +5,7 @@ Open-source vector similarity search for Postgres
|
|||||||
Store your vectors with the rest of your data. Supports:
|
Store your vectors with the rest of your data. Supports:
|
||||||
|
|
||||||
- exact and approximate nearest neighbor search
|
- exact and approximate nearest neighbor search
|
||||||
- L2 distance, inner product, and cosine distance
|
- L2 distance, inner product, cosine distance, and more
|
||||||
- any [language](#languages) with a Postgres client
|
- any [language](#languages) with a Postgres client
|
||||||
|
|
||||||
Plus [ACID](https://en.wikipedia.org/wiki/ACID) compliance, point-in-time recovery, JOINs, and all of the other [great features](https://www.postgresql.org/about/) of Postgres
|
Plus [ACID](https://en.wikipedia.org/wiki/ACID) compliance, point-in-time recovery, JOINs, and all of the other [great features](https://www.postgresql.org/about/) of Postgres
|
||||||
@@ -20,13 +20,13 @@ Compile and install the extension (supports Postgres 12+)
|
|||||||
|
|
||||||
```sh
|
```sh
|
||||||
cd /tmp
|
cd /tmp
|
||||||
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git
|
git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
|
cd pgvector
|
||||||
make
|
make
|
||||||
make install # may need sudo
|
make install # may need sudo
|
||||||
```
|
```
|
||||||
|
|
||||||
See the [installation notes](#installation-notes) if you run into issues
|
See the [installation notes](#installation-notes---linux-and-mac) if you run into issues
|
||||||
|
|
||||||
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector).
|
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector).
|
||||||
|
|
||||||
@@ -44,12 +44,15 @@ Then use `nmake` to build:
|
|||||||
|
|
||||||
```cmd
|
```cmd
|
||||||
set "PGROOT=C:\Program Files\PostgreSQL\16"
|
set "PGROOT=C:\Program Files\PostgreSQL\16"
|
||||||
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git
|
cd %TEMP%
|
||||||
|
git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
|
cd pgvector
|
||||||
nmake /F Makefile.win
|
nmake /F Makefile.win
|
||||||
nmake /F Makefile.win install
|
nmake /F Makefile.win install
|
||||||
```
|
```
|
||||||
|
|
||||||
|
See the [installation notes](#installation-notes---windows) if you run into issues
|
||||||
|
|
||||||
You can also install it with [Docker](#docker) or [conda-forge](#conda-forge).
|
You can also install it with [Docker](#docker) or [conda-forge](#conda-forge).
|
||||||
|
|
||||||
## Getting Started
|
## Getting Started
|
||||||
@@ -218,7 +221,19 @@ Cosine distance
|
|||||||
CREATE INDEX ON items USING hnsw (embedding vector_cosine_ops);
|
CREATE INDEX ON items USING hnsw (embedding vector_cosine_ops);
|
||||||
```
|
```
|
||||||
|
|
||||||
Vectors with up to 2,000 dimensions can be indexed.
|
Hamming distance - added in 0.7.0
|
||||||
|
|
||||||
|
```sql
|
||||||
|
CREATE INDEX ON items USING hnsw (embedding bit_hamming_ops);
|
||||||
|
```
|
||||||
|
|
||||||
|
Jaccard distance - added in 0.7.0
|
||||||
|
|
||||||
|
```sql
|
||||||
|
CREATE INDEX ON items USING hnsw (embedding bit_jaccard_ops);
|
||||||
|
```
|
||||||
|
|
||||||
|
Vectors with up to 2,000 dimensions can be indexed, or bit vectors with up to 64,000 dimensions.
|
||||||
|
|
||||||
### Index Options
|
### Index Options
|
||||||
|
|
||||||
@@ -410,13 +425,39 @@ You can use [Reciprocal Rank Fusion](https://github.com/pgvector/pgvector-python
|
|||||||
|
|
||||||
## Performance
|
## Performance
|
||||||
|
|
||||||
|
### Tuning
|
||||||
|
|
||||||
|
Use a tool like [PgTune](https://pgtune.leopard.in.ua/) to set initial values for Postgres server parameters.
|
||||||
|
|
||||||
|
### Loading
|
||||||
|
|
||||||
|
Use `COPY` for bulk loading data ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/bulk_loading.py)).
|
||||||
|
|
||||||
|
```sql
|
||||||
|
COPY items (embedding) FROM STDIN WITH (FORMAT BINARY);
|
||||||
|
```
|
||||||
|
|
||||||
|
Add any indexes *after* loading the initial data for best performance.
|
||||||
|
|
||||||
|
### Indexing
|
||||||
|
|
||||||
|
See index build time for [HNSW](#index-build-time) and [IVFFlat](#index-build-time-1).
|
||||||
|
|
||||||
|
In production environments, create indexes concurrently to avoid blocking writes.
|
||||||
|
|
||||||
|
```sql
|
||||||
|
CREATE INDEX CONCURRENTLY ...
|
||||||
|
```
|
||||||
|
|
||||||
|
### Querying
|
||||||
|
|
||||||
Use `EXPLAIN ANALYZE` to debug performance.
|
Use `EXPLAIN ANALYZE` to debug performance.
|
||||||
|
|
||||||
```sql
|
```sql
|
||||||
EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5;
|
EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5;
|
||||||
```
|
```
|
||||||
|
|
||||||
### Exact Search
|
#### Exact Search
|
||||||
|
|
||||||
To speed up queries without an index, increase `max_parallel_workers_per_gather`.
|
To speed up queries without an index, increase `max_parallel_workers_per_gather`.
|
||||||
|
|
||||||
@@ -430,7 +471,7 @@ If vectors are normalized to length 1 (like [OpenAI embeddings](https://platform
|
|||||||
SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5;
|
SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5;
|
||||||
```
|
```
|
||||||
|
|
||||||
### Approximate Search
|
#### Approximate Search
|
||||||
|
|
||||||
To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall).
|
To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall).
|
||||||
|
|
||||||
@@ -438,7 +479,7 @@ To speed up queries with an IVFFlat index, increase the number of inverted lists
|
|||||||
CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000);
|
CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000);
|
||||||
```
|
```
|
||||||
|
|
||||||
## Vacuuming
|
### Vacuuming
|
||||||
|
|
||||||
Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first.
|
Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first.
|
||||||
|
|
||||||
@@ -447,6 +488,41 @@ REINDEX INDEX CONCURRENTLY index_name;
|
|||||||
VACUUM table_name;
|
VACUUM table_name;
|
||||||
```
|
```
|
||||||
|
|
||||||
|
## Monitoring
|
||||||
|
|
||||||
|
Monitor performance with [pg_stat_statements](https://www.postgresql.org/docs/current/pgstatstatements.html) (be sure to add it to `shared_preload_libraries`).
|
||||||
|
|
||||||
|
```sql
|
||||||
|
CREATE EXTENSION pg_stat_statements;
|
||||||
|
```
|
||||||
|
|
||||||
|
Get the most time-consuming queries with:
|
||||||
|
|
||||||
|
```sql
|
||||||
|
SELECT query, calls, ROUND((total_plan_time + total_exec_time) / calls) AS avg_time_ms,
|
||||||
|
ROUND((total_plan_time + total_exec_time) / 60000) AS total_time_min
|
||||||
|
FROM pg_stat_statements ORDER BY total_plan_time + total_exec_time DESC LIMIT 20;
|
||||||
|
```
|
||||||
|
|
||||||
|
Note: Replace `total_plan_time + total_exec_time` with `total_time` for Postgres < 13
|
||||||
|
|
||||||
|
Monitor recall by comparing results from approximate search with exact search.
|
||||||
|
|
||||||
|
```sql
|
||||||
|
BEGIN;
|
||||||
|
SET LOCAL enable_indexscan = off; -- use exact search
|
||||||
|
SELECT ...
|
||||||
|
COMMIT;
|
||||||
|
```
|
||||||
|
|
||||||
|
## Scaling
|
||||||
|
|
||||||
|
Scale pgvector the same way you scale Postgres.
|
||||||
|
|
||||||
|
Scale vertically by increasing memory, CPU, and storage on a single instance. Use existing tools to [tune parameters](#tuning) and [monitor performance](#monitoring).
|
||||||
|
|
||||||
|
Scale horizontally with [replicas](https://www.postgresql.org/docs/current/hot-standby.html), or use [Citus](https://github.com/citusdata/citus) or another approach for sharding ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/citus.py)).
|
||||||
|
|
||||||
## Languages
|
## Languages
|
||||||
|
|
||||||
Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another.
|
Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another.
|
||||||
@@ -540,6 +616,18 @@ and query with:
|
|||||||
SELECT * FROM items ORDER BY embedding::vector(3) <-> '[3,1,2]' LIMIT 5;
|
SELECT * FROM items ORDER BY embedding::vector(3) <-> '[3,1,2]' LIMIT 5;
|
||||||
```
|
```
|
||||||
|
|
||||||
|
#### Are binary vectors supported?
|
||||||
|
|
||||||
|
You can store binary vectors and perform exact nearest neighbor search by Hamming distance in Postgres without an extension ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/hash_image_search.py)).
|
||||||
|
|
||||||
|
```tsql
|
||||||
|
CREATE TABLE items (id bigserial PRIMARY KEY, embedding bit(3));
|
||||||
|
INSERT INTO items (embedding) VALUES (B'000'), (B'111');
|
||||||
|
SELECT * FROM items ORDER BY bit_count(embedding # B'101') LIMIT 5;
|
||||||
|
```
|
||||||
|
|
||||||
|
Indexing is not currently supported.
|
||||||
|
|
||||||
#### Do indexes need to fit into memory?
|
#### Do indexes need to fit into memory?
|
||||||
|
|
||||||
No, but like other index types, you’ll likely see better performance if they do. You can get the size of an index with:
|
No, but like other index types, you’ll likely see better performance if they do. You can get the size of an index with:
|
||||||
@@ -552,7 +640,17 @@ SELECT pg_size_pretty(pg_relation_size('index_name'));
|
|||||||
|
|
||||||
#### Why isn’t a query using an index?
|
#### Why isn’t a query using an index?
|
||||||
|
|
||||||
The cost estimation in pgvector < 0.4.3 does not always work well with the planner. You can encourage the planner to use an index for a query with:
|
The query needs to have an `ORDER BY` and `LIMIT`, and the `ORDER BY` must be the result of a distance operator, not an expression.
|
||||||
|
|
||||||
|
```sql
|
||||||
|
-- index
|
||||||
|
ORDER BY embedding <=> '[3,1,2]' LIMIT 5;
|
||||||
|
|
||||||
|
-- no index
|
||||||
|
ORDER BY 1 - (embedding <=> '[3,1,2]') DESC LIMIT 5;
|
||||||
|
```
|
||||||
|
|
||||||
|
You can encourage the planner to use an index for a query with:
|
||||||
|
|
||||||
```sql
|
```sql
|
||||||
BEGIN;
|
BEGIN;
|
||||||
@@ -581,6 +679,10 @@ or choose to store vectors inline:
|
|||||||
ALTER TABLE items ALTER COLUMN embedding SET STORAGE PLAIN;
|
ALTER TABLE items ALTER COLUMN embedding SET STORAGE PLAIN;
|
||||||
```
|
```
|
||||||
|
|
||||||
|
#### Why are there less results for a query after adding an HNSW index?
|
||||||
|
|
||||||
|
Results are limited by the size of the dynamic candidate list (`hnsw.ef_search`). There may be even less results due to dead tuples or filtering conditions in the query. We recommend setting `hnsw.ef_search` to at least twice the `LIMIT` of the query. If you need more than 500 results, use an IVFFlat index instead.
|
||||||
|
|
||||||
#### Why are there less results for a query after adding an IVFFlat index?
|
#### Why are there less results for a query after adding an IVFFlat index?
|
||||||
|
|
||||||
The index was likely created with too little data for the number of lists. Drop the index until the table has more data.
|
The index was likely created with too little data for the number of lists. Drop the index until the table has more data.
|
||||||
@@ -589,6 +691,8 @@ The index was likely created with too little data for the number of lists. Drop
|
|||||||
DROP INDEX index_name;
|
DROP INDEX index_name;
|
||||||
```
|
```
|
||||||
|
|
||||||
|
Results can also be limited by the number of probes (`ivfflat.probes`).
|
||||||
|
|
||||||
## Reference
|
## Reference
|
||||||
|
|
||||||
### Vector Type
|
### Vector Type
|
||||||
@@ -614,6 +718,7 @@ cosine_distance(vector, vector) → double precision | cosine distance |
|
|||||||
inner_product(vector, vector) → double precision | inner product |
|
inner_product(vector, vector) → double precision | inner product |
|
||||||
l2_distance(vector, vector) → double precision | Euclidean distance |
|
l2_distance(vector, vector) → double precision | Euclidean distance |
|
||||||
l1_distance(vector, vector) → double precision | taxicab distance | 0.5.0
|
l1_distance(vector, vector) → double precision | taxicab distance | 0.5.0
|
||||||
|
quantize_binary(vector) → bit | quantize | 0.7.0
|
||||||
vector_dims(vector) → integer | number of dimensions |
|
vector_dims(vector) → integer | number of dimensions |
|
||||||
vector_norm(vector) → double precision | Euclidean norm |
|
vector_norm(vector) → double precision | Euclidean norm |
|
||||||
|
|
||||||
@@ -624,7 +729,21 @@ Function | Description | Added
|
|||||||
avg(vector) → vector | average |
|
avg(vector) → vector | average |
|
||||||
sum(vector) → vector | sum | 0.5.0
|
sum(vector) → vector | sum | 0.5.0
|
||||||
|
|
||||||
## Installation Notes
|
### Bit Operators
|
||||||
|
|
||||||
|
Operator | Description | Added
|
||||||
|
--- | --- | ---
|
||||||
|
<~> | Hamming distance | 0.7.0
|
||||||
|
<%> | Jaccard distance | 0.7.0
|
||||||
|
|
||||||
|
### Bit Functions
|
||||||
|
|
||||||
|
Function | Description | Added
|
||||||
|
--- | --- | ---
|
||||||
|
hamming_distance(bit, bit) → double precision | Hamming distance | 0.7.0
|
||||||
|
jaccard_distance(bit, bit) → double precision | Jaccard distance | 0.7.0
|
||||||
|
|
||||||
|
## Installation Notes - Linux and Mac
|
||||||
|
|
||||||
### Postgres Location
|
### Postgres Location
|
||||||
|
|
||||||
@@ -666,12 +785,24 @@ If compilation fails and the output includes `warning: no such sysroot directory
|
|||||||
|
|
||||||
### Portability
|
### Portability
|
||||||
|
|
||||||
|
By default, pgvector compiles with `-march=native` on some platforms for best performance. However, this can lead to `Illegal instruction` errors if trying to run the compiled extension on a different machine.
|
||||||
|
|
||||||
To compile for portability, use:
|
To compile for portability, use:
|
||||||
|
|
||||||
```sh
|
```sh
|
||||||
make OPTFLAGS=""
|
make OPTFLAGS=""
|
||||||
```
|
```
|
||||||
|
|
||||||
|
## Installation Notes - Windows
|
||||||
|
|
||||||
|
### Missing Header
|
||||||
|
|
||||||
|
If compilation fails with `Cannot open include file: 'postgres.h': No such file or directory`, make sure `PGROOT` is correct.
|
||||||
|
|
||||||
|
### Permissions
|
||||||
|
|
||||||
|
If installation fails with `Access is denied`, re-run the installation instructions as an administrator.
|
||||||
|
|
||||||
## Additional Installation Methods
|
## Additional Installation Methods
|
||||||
|
|
||||||
### Docker
|
### Docker
|
||||||
@@ -687,7 +818,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
|
|||||||
You can also build the image manually:
|
You can also build the image manually:
|
||||||
|
|
||||||
```sh
|
```sh
|
||||||
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git
|
git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
|
||||||
cd pgvector
|
cd pgvector
|
||||||
docker build --build-arg PG_MAJOR=16 -t myuser/pgvector .
|
docker build --build-arg PG_MAJOR=16 -t myuser/pgvector .
|
||||||
```
|
```
|
||||||
@@ -856,6 +987,12 @@ make installcheck REGRESS=functions # regression test
|
|||||||
make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test
|
make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test
|
||||||
```
|
```
|
||||||
|
|
||||||
|
To enable assertions:
|
||||||
|
|
||||||
|
```sh
|
||||||
|
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
|
||||||
|
```
|
||||||
|
|
||||||
To enable benchmarking:
|
To enable benchmarking:
|
||||||
|
|
||||||
```sh
|
```sh
|
||||||
@@ -868,12 +1005,6 @@ To show memory usage:
|
|||||||
make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install
|
make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install
|
||||||
```
|
```
|
||||||
|
|
||||||
To enable assertions:
|
|
||||||
|
|
||||||
```sh
|
|
||||||
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
|
|
||||||
```
|
|
||||||
|
|
||||||
To get k-means metrics:
|
To get k-means metrics:
|
||||||
|
|
||||||
```sh
|
```sh
|
||||||
|
|||||||
2
sql/vector--0.6.1--0.6.2.sql
Normal file
2
sql/vector--0.6.1--0.6.2.sql
Normal file
@@ -0,0 +1,2 @@
|
|||||||
|
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
|
||||||
|
\echo Use "ALTER EXTENSION vector UPDATE TO '0.6.2'" to load this file. \quit
|
||||||
31
sql/vector--0.6.2--0.7.0.sql
Normal file
31
sql/vector--0.6.2--0.7.0.sql
Normal file
@@ -0,0 +1,31 @@
|
|||||||
|
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
|
||||||
|
\echo Use "ALTER EXTENSION vector UPDATE TO '0.7.0'" to load this file. \quit
|
||||||
|
|
||||||
|
CREATE FUNCTION quantize_binary(vector) RETURNS bit
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE FUNCTION hamming_distance(bit, bit) RETURNS float8
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE FUNCTION jaccard_distance(bit, bit) RETURNS float8
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE OPERATOR <~> (
|
||||||
|
LEFTARG = bit, RIGHTARG = bit, PROCEDURE = hamming_distance,
|
||||||
|
COMMUTATOR = '<~>'
|
||||||
|
);
|
||||||
|
|
||||||
|
CREATE OPERATOR <%> (
|
||||||
|
LEFTARG = bit, RIGHTARG = bit, PROCEDURE = jaccard_distance,
|
||||||
|
COMMUTATOR = '<%>'
|
||||||
|
);
|
||||||
|
|
||||||
|
CREATE OPERATOR CLASS bit_hamming_ops
|
||||||
|
FOR TYPE bit USING hnsw AS
|
||||||
|
OPERATOR 1 <~> (bit, bit) FOR ORDER BY float_ops,
|
||||||
|
FUNCTION 1 hamming_distance(bit, bit);
|
||||||
|
|
||||||
|
CREATE OPERATOR CLASS bit_jaccard_ops
|
||||||
|
FOR TYPE bit USING hnsw AS
|
||||||
|
OPERATOR 1 <%> (bit, bit) FOR ORDER BY float_ops,
|
||||||
|
FUNCTION 1 jaccard_distance(bit, bit);
|
||||||
@@ -58,6 +58,9 @@ CREATE FUNCTION vector_sub(vector, vector) RETURNS vector
|
|||||||
CREATE FUNCTION vector_mul(vector, vector) RETURNS vector
|
CREATE FUNCTION vector_mul(vector, vector) RETURNS vector
|
||||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE FUNCTION quantize_binary(vector) RETURNS bit
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
-- private functions
|
-- private functions
|
||||||
|
|
||||||
CREATE FUNCTION vector_lt(vector, vector) RETURNS bool
|
CREATE FUNCTION vector_lt(vector, vector) RETURNS bool
|
||||||
@@ -287,3 +290,31 @@ CREATE OPERATOR CLASS vector_cosine_ops
|
|||||||
OPERATOR 1 <=> (vector, vector) FOR ORDER BY float_ops,
|
OPERATOR 1 <=> (vector, vector) FOR ORDER BY float_ops,
|
||||||
FUNCTION 1 vector_negative_inner_product(vector, vector),
|
FUNCTION 1 vector_negative_inner_product(vector, vector),
|
||||||
FUNCTION 2 vector_norm(vector);
|
FUNCTION 2 vector_norm(vector);
|
||||||
|
|
||||||
|
-- bit functions
|
||||||
|
|
||||||
|
CREATE FUNCTION hamming_distance(bit, bit) RETURNS float8
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE FUNCTION jaccard_distance(bit, bit) RETURNS float8
|
||||||
|
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE OPERATOR <~> (
|
||||||
|
LEFTARG = bit, RIGHTARG = bit, PROCEDURE = hamming_distance,
|
||||||
|
COMMUTATOR = '<~>'
|
||||||
|
);
|
||||||
|
|
||||||
|
CREATE OPERATOR <%> (
|
||||||
|
LEFTARG = bit, RIGHTARG = bit, PROCEDURE = jaccard_distance,
|
||||||
|
COMMUTATOR = '<%>'
|
||||||
|
);
|
||||||
|
|
||||||
|
CREATE OPERATOR CLASS bit_hamming_ops
|
||||||
|
FOR TYPE bit USING hnsw AS
|
||||||
|
OPERATOR 1 <~> (bit, bit) FOR ORDER BY float_ops,
|
||||||
|
FUNCTION 1 hamming_distance(bit, bit);
|
||||||
|
|
||||||
|
CREATE OPERATOR CLASS bit_jaccard_ops
|
||||||
|
FOR TYPE bit USING hnsw AS
|
||||||
|
OPERATOR 1 <%> (bit, bit) FOR ORDER BY float_ops,
|
||||||
|
FUNCTION 1 jaccard_distance(bit, bit);
|
||||||
|
|||||||
90
src/bitvector.c
Normal file
90
src/bitvector.c
Normal file
@@ -0,0 +1,90 @@
|
|||||||
|
#include "postgres.h"
|
||||||
|
|
||||||
|
#include "bitvector.h"
|
||||||
|
#include "port/pg_bitutils.h"
|
||||||
|
#include "utils/varbit.h"
|
||||||
|
|
||||||
|
#if PG_VERSION_NUM >= 160000
|
||||||
|
#include "varatt.h"
|
||||||
|
#endif
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Allocate and initialize a new bit vector
|
||||||
|
*/
|
||||||
|
VarBit *
|
||||||
|
InitBitVector(int dim)
|
||||||
|
{
|
||||||
|
VarBit *result;
|
||||||
|
int size;
|
||||||
|
|
||||||
|
size = VARBITTOTALLEN(dim);
|
||||||
|
result = (VarBit *) palloc0(size);
|
||||||
|
SET_VARSIZE(result, size);
|
||||||
|
VARBITLEN(result) = dim;
|
||||||
|
|
||||||
|
return result;
|
||||||
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Ensure same number of bits
|
||||||
|
*/
|
||||||
|
static inline void
|
||||||
|
CheckBitLengths(uint32 aLen, uint32 bLen)
|
||||||
|
{
|
||||||
|
if (aLen != bLen)
|
||||||
|
ereport(ERROR,
|
||||||
|
(errcode(ERRCODE_DATA_EXCEPTION),
|
||||||
|
errmsg("different bit lengths %u and %u", aLen, bLen)));
|
||||||
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get the Hamming distance between two bit strings
|
||||||
|
*/
|
||||||
|
PGDLLEXPORT PG_FUNCTION_INFO_V1(hamming_distance);
|
||||||
|
Datum
|
||||||
|
hamming_distance(PG_FUNCTION_ARGS)
|
||||||
|
{
|
||||||
|
VarBit *a = PG_GETARG_VARBIT_P(0);
|
||||||
|
VarBit *b = PG_GETARG_VARBIT_P(1);
|
||||||
|
unsigned char *ax = VARBITS(a);
|
||||||
|
unsigned char *bx = VARBITS(b);
|
||||||
|
uint64 distance = 0;
|
||||||
|
|
||||||
|
CheckBitLengths(VARBITLEN(a), VARBITLEN(b));
|
||||||
|
|
||||||
|
/* TODO Improve performance */
|
||||||
|
for (uint32 i = 0; i < VARBITBYTES(a); i++)
|
||||||
|
distance += pg_number_of_ones[ax[i] ^ bx[i]];
|
||||||
|
|
||||||
|
PG_RETURN_FLOAT8((double) distance);
|
||||||
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get the Jaccard distance between two bit strings
|
||||||
|
*/
|
||||||
|
PGDLLEXPORT PG_FUNCTION_INFO_V1(jaccard_distance);
|
||||||
|
Datum
|
||||||
|
jaccard_distance(PG_FUNCTION_ARGS)
|
||||||
|
{
|
||||||
|
VarBit *a = PG_GETARG_VARBIT_P(0);
|
||||||
|
VarBit *b = PG_GETARG_VARBIT_P(1);
|
||||||
|
unsigned char *ax = VARBITS(a);
|
||||||
|
unsigned char *bx = VARBITS(b);
|
||||||
|
uint64 ab = 0;
|
||||||
|
uint64 aa;
|
||||||
|
uint64 bb;
|
||||||
|
|
||||||
|
CheckBitLengths(VARBITLEN(a), VARBITLEN(b));
|
||||||
|
|
||||||
|
/* TODO Improve performance */
|
||||||
|
for (uint32 i = 0; i < VARBITBYTES(a); i++)
|
||||||
|
ab += pg_number_of_ones[ax[i] & bx[i]];
|
||||||
|
|
||||||
|
if (ab == 0)
|
||||||
|
PG_RETURN_FLOAT8(1);
|
||||||
|
|
||||||
|
aa = pg_popcount((char *) ax, VARBITBYTES(a));
|
||||||
|
bb = pg_popcount((char *) bx, VARBITBYTES(b));
|
||||||
|
|
||||||
|
PG_RETURN_FLOAT8(1 - (ab / ((double) (aa + bb - ab))));
|
||||||
|
}
|
||||||
8
src/bitvector.h
Normal file
8
src/bitvector.h
Normal file
@@ -0,0 +1,8 @@
|
|||||||
|
#ifndef BITVECTOR_H
|
||||||
|
#define BITVECTOR_H
|
||||||
|
|
||||||
|
#include "utils/varbit.h"
|
||||||
|
|
||||||
|
VarBit *InitBitVector(int dim);
|
||||||
|
|
||||||
|
#endif
|
||||||
@@ -129,7 +129,7 @@ HnswPtrDeclare(HnswNeighborArray, HnswNeighborArrayRelptr, HnswNeighborArrayPtr)
|
|||||||
HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr);
|
HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr);
|
||||||
HnswPtrDeclare(char, DatumRelptr, DatumPtr);
|
HnswPtrDeclare(char, DatumRelptr, DatumPtr);
|
||||||
|
|
||||||
typedef struct HnswElementData
|
struct HnswElementData
|
||||||
{
|
{
|
||||||
HnswElementPtr next;
|
HnswElementPtr next;
|
||||||
ItemPointerData heaptids[HNSW_HEAPTIDS];
|
ItemPointerData heaptids[HNSW_HEAPTIDS];
|
||||||
@@ -144,7 +144,7 @@ typedef struct HnswElementData
|
|||||||
BlockNumber neighborPage;
|
BlockNumber neighborPage;
|
||||||
DatumPtr value;
|
DatumPtr value;
|
||||||
LWLock lock;
|
LWLock lock;
|
||||||
} HnswElementData;
|
};
|
||||||
|
|
||||||
typedef HnswElementData * HnswElement;
|
typedef HnswElementData * HnswElement;
|
||||||
|
|
||||||
@@ -155,12 +155,12 @@ typedef struct HnswCandidate
|
|||||||
bool closer;
|
bool closer;
|
||||||
} HnswCandidate;
|
} HnswCandidate;
|
||||||
|
|
||||||
typedef struct HnswNeighborArray
|
struct HnswNeighborArray
|
||||||
{
|
{
|
||||||
int length;
|
int length;
|
||||||
bool closerSet;
|
bool closerSet;
|
||||||
HnswCandidate items[FLEXIBLE_ARRAY_MEMBER];
|
HnswCandidate items[FLEXIBLE_ARRAY_MEMBER];
|
||||||
} HnswNeighborArray;
|
};
|
||||||
|
|
||||||
typedef struct HnswPairingHeapNode
|
typedef struct HnswPairingHeapNode
|
||||||
{
|
{
|
||||||
@@ -185,6 +185,7 @@ typedef struct HnswGraph
|
|||||||
|
|
||||||
/* Entry state */
|
/* Entry state */
|
||||||
LWLock entryLock;
|
LWLock entryLock;
|
||||||
|
LWLock entryWaitLock;
|
||||||
HnswElementPtr entryPoint;
|
HnswElementPtr entryPoint;
|
||||||
|
|
||||||
/* Allocations state */
|
/* Allocations state */
|
||||||
|
|||||||
@@ -44,6 +44,7 @@
|
|||||||
#include "access/xact.h"
|
#include "access/xact.h"
|
||||||
#include "access/xloginsert.h"
|
#include "access/xloginsert.h"
|
||||||
#include "catalog/index.h"
|
#include "catalog/index.h"
|
||||||
|
#include "catalog/pg_type_d.h"
|
||||||
#include "commands/progress.h"
|
#include "commands/progress.h"
|
||||||
#include "hnsw.h"
|
#include "hnsw.h"
|
||||||
#include "miscadmin.h"
|
#include "miscadmin.h"
|
||||||
@@ -431,10 +432,15 @@ InsertTupleInMemory(HnswBuildState * buildstate, HnswElement element)
|
|||||||
HnswGraph *graph = buildstate->graph;
|
HnswGraph *graph = buildstate->graph;
|
||||||
HnswElement entryPoint;
|
HnswElement entryPoint;
|
||||||
LWLock *entryLock = &graph->entryLock;
|
LWLock *entryLock = &graph->entryLock;
|
||||||
|
LWLock *entryWaitLock = &graph->entryWaitLock;
|
||||||
int efConstruction = buildstate->efConstruction;
|
int efConstruction = buildstate->efConstruction;
|
||||||
int m = buildstate->m;
|
int m = buildstate->m;
|
||||||
char *base = buildstate->hnswarea;
|
char *base = buildstate->hnswarea;
|
||||||
|
|
||||||
|
/* Wait if another process needs exclusive lock on entry lock */
|
||||||
|
LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
|
||||||
|
LWLockRelease(entryWaitLock);
|
||||||
|
|
||||||
/* Get entry point */
|
/* Get entry point */
|
||||||
LWLockAcquire(entryLock, LW_SHARED);
|
LWLockAcquire(entryLock, LW_SHARED);
|
||||||
entryPoint = HnswPtrAccess(base, graph->entryPoint);
|
entryPoint = HnswPtrAccess(base, graph->entryPoint);
|
||||||
@@ -445,8 +451,10 @@ InsertTupleInMemory(HnswBuildState * buildstate, HnswElement element)
|
|||||||
/* Release shared lock */
|
/* Release shared lock */
|
||||||
LWLockRelease(entryLock);
|
LWLockRelease(entryLock);
|
||||||
|
|
||||||
/* Get exclusive lock */
|
/* Tell other processes to wait and get exclusive lock */
|
||||||
|
LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
|
||||||
LWLockAcquire(entryLock, LW_EXCLUSIVE);
|
LWLockAcquire(entryLock, LW_EXCLUSIVE);
|
||||||
|
LWLockRelease(entryWaitLock);
|
||||||
|
|
||||||
/* Get latest entry point after lock is acquired */
|
/* Get latest entry point after lock is acquired */
|
||||||
entryPoint = HnswPtrAccess(base, graph->entryPoint);
|
entryPoint = HnswPtrAccess(base, graph->entryPoint);
|
||||||
@@ -612,6 +620,7 @@ InitGraph(HnswGraph * graph, char *base, long memoryTotal)
|
|||||||
graph->indtuples = 0;
|
graph->indtuples = 0;
|
||||||
SpinLockInit(&graph->lock);
|
SpinLockInit(&graph->lock);
|
||||||
LWLockInitialize(&graph->entryLock, hnsw_lock_tranche_id);
|
LWLockInitialize(&graph->entryLock, hnsw_lock_tranche_id);
|
||||||
|
LWLockInitialize(&graph->entryWaitLock, hnsw_lock_tranche_id);
|
||||||
LWLockInitialize(&graph->allocatorLock, hnsw_lock_tranche_id);
|
LWLockInitialize(&graph->allocatorLock, hnsw_lock_tranche_id);
|
||||||
LWLockInitialize(&graph->flushLock, hnsw_lock_tranche_id);
|
LWLockInitialize(&graph->flushLock, hnsw_lock_tranche_id);
|
||||||
}
|
}
|
||||||
@@ -663,6 +672,12 @@ HnswSharedMemoryAlloc(Size size, void *state)
|
|||||||
static void
|
static void
|
||||||
InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, IndexInfo *indexInfo, ForkNumber forkNum)
|
InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, IndexInfo *indexInfo, ForkNumber forkNum)
|
||||||
{
|
{
|
||||||
|
int maxDimensions = HNSW_MAX_DIM;
|
||||||
|
Oid typid = TupleDescAttr(index->rd_att, 0)->atttypid;
|
||||||
|
|
||||||
|
if (typid == BITOID || typid == VARBITOID)
|
||||||
|
maxDimensions *= 32;
|
||||||
|
|
||||||
buildstate->heap = heap;
|
buildstate->heap = heap;
|
||||||
buildstate->index = index;
|
buildstate->index = index;
|
||||||
buildstate->indexInfo = indexInfo;
|
buildstate->indexInfo = indexInfo;
|
||||||
@@ -676,8 +691,8 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
|||||||
if (buildstate->dimensions < 0)
|
if (buildstate->dimensions < 0)
|
||||||
elog(ERROR, "column does not have dimensions");
|
elog(ERROR, "column does not have dimensions");
|
||||||
|
|
||||||
if (buildstate->dimensions > HNSW_MAX_DIM)
|
if (buildstate->dimensions > maxDimensions)
|
||||||
elog(ERROR, "column cannot have more than %d dimensions for hnsw index", HNSW_MAX_DIM);
|
elog(ERROR, "column cannot have more than %d dimensions for hnsw index", maxDimensions);
|
||||||
|
|
||||||
if (buildstate->efConstruction < 2 * buildstate->m)
|
if (buildstate->efConstruction < 2 * buildstate->m)
|
||||||
elog(ERROR, "ef_construction must be greater than or equal to 2 * m");
|
elog(ERROR, "ef_construction must be greater than or equal to 2 * m");
|
||||||
|
|||||||
@@ -1,6 +1,8 @@
|
|||||||
#include "postgres.h"
|
#include "postgres.h"
|
||||||
|
|
||||||
#include "access/relscan.h"
|
#include "access/relscan.h"
|
||||||
|
#include "bitvector.h"
|
||||||
|
#include "catalog/pg_type_d.h"
|
||||||
#include "hnsw.h"
|
#include "hnsw.h"
|
||||||
#include "pgstat.h"
|
#include "pgstat.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
@@ -73,7 +75,15 @@ GetScanValue(IndexScanDesc scan)
|
|||||||
Datum value;
|
Datum value;
|
||||||
|
|
||||||
if (scan->orderByData->sk_flags & SK_ISNULL)
|
if (scan->orderByData->sk_flags & SK_ISNULL)
|
||||||
value = PointerGetDatum(InitVector(GetDimensions(scan->indexRelation)));
|
{
|
||||||
|
Oid typid = TupleDescAttr(scan->indexRelation->rd_att, 0)->atttypid;
|
||||||
|
int dimensions = GetDimensions(scan->indexRelation);
|
||||||
|
|
||||||
|
if (typid == BITOID || typid == VARBITOID)
|
||||||
|
value = PointerGetDatum(InitBitVector(dimensions));
|
||||||
|
else
|
||||||
|
value = PointerGetDatum(InitVector(dimensions));
|
||||||
|
}
|
||||||
else
|
else
|
||||||
{
|
{
|
||||||
value = scan->orderByData->sk_argument;
|
value = scan->orderByData->sk_argument;
|
||||||
|
|||||||
21
src/vector.c
21
src/vector.c
@@ -2,6 +2,7 @@
|
|||||||
|
|
||||||
#include <math.h>
|
#include <math.h>
|
||||||
|
|
||||||
|
#include "bitvector.h"
|
||||||
#include "catalog/pg_type.h"
|
#include "catalog/pg_type.h"
|
||||||
#include "common/shortest_dec.h"
|
#include "common/shortest_dec.h"
|
||||||
#include "fmgr.h"
|
#include "fmgr.h"
|
||||||
@@ -860,6 +861,26 @@ vector_mul(PG_FUNCTION_ARGS)
|
|||||||
PG_RETURN_POINTER(result);
|
PG_RETURN_POINTER(result);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Quantize a vector
|
||||||
|
*/
|
||||||
|
PGDLLEXPORT PG_FUNCTION_INFO_V1(quantize_binary);
|
||||||
|
Datum
|
||||||
|
quantize_binary(PG_FUNCTION_ARGS)
|
||||||
|
{
|
||||||
|
Vector *a = PG_GETARG_VECTOR_P(0);
|
||||||
|
float *ax = a->x;
|
||||||
|
VarBit *result = InitBitVector(a->dim);
|
||||||
|
unsigned char *rx = VARBITS(result);
|
||||||
|
|
||||||
|
/* TODO Improve */
|
||||||
|
for (int i = 0; i < a->dim; i++)
|
||||||
|
rx[i / 8] |= (ax[i] > 0) << (7 - (i % 8));
|
||||||
|
|
||||||
|
PG_RETURN_VARBIT_P(result);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Internal helper to compare vectors
|
* Internal helper to compare vectors
|
||||||
*/
|
*/
|
||||||
|
|||||||
64
test/expected/bit_functions.out
Normal file
64
test/expected/bit_functions.out
Normal file
@@ -0,0 +1,64 @@
|
|||||||
|
SELECT hamming_distance(B'111', B'111');
|
||||||
|
hamming_distance
|
||||||
|
------------------
|
||||||
|
0
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT hamming_distance(B'111', B'110');
|
||||||
|
hamming_distance
|
||||||
|
------------------
|
||||||
|
1
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT hamming_distance(B'111', B'100');
|
||||||
|
hamming_distance
|
||||||
|
------------------
|
||||||
|
2
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT hamming_distance(B'111', B'000');
|
||||||
|
hamming_distance
|
||||||
|
------------------
|
||||||
|
3
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT hamming_distance(B'111', B'00');
|
||||||
|
ERROR: different bit lengths 3 and 2
|
||||||
|
SELECT jaccard_distance(B'1111', B'1111');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
0
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'1110');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
0.25
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'1100');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
0.5
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'1000');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
0.75
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'0000');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
1
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1100', B'1000');
|
||||||
|
jaccard_distance
|
||||||
|
------------------
|
||||||
|
0.5
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'000');
|
||||||
|
ERROR: different bit lengths 4 and 3
|
||||||
@@ -208,6 +208,18 @@ SELECT l1_distance('[3e38]', '[-3e38]');
|
|||||||
Infinity
|
Infinity
|
||||||
(1 row)
|
(1 row)
|
||||||
|
|
||||||
|
SELECT quantize_binary('[1,0,-1]');
|
||||||
|
quantize_binary
|
||||||
|
-----------------
|
||||||
|
100
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
SELECT quantize_binary('[0,0.1,-0.2,-0.3,0.4,0.5,0.6,-0.7,0.8,-0.9,1]');
|
||||||
|
quantize_binary
|
||||||
|
-----------------
|
||||||
|
01001110101
|
||||||
|
(1 row)
|
||||||
|
|
||||||
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]']) v;
|
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]']) v;
|
||||||
avg
|
avg
|
||||||
-----------
|
-----------
|
||||||
|
|||||||
21
test/expected/hnsw_hamming.out
Normal file
21
test/expected/hnsw_hamming.out
Normal file
@@ -0,0 +1,21 @@
|
|||||||
|
SET enable_seqscan = off;
|
||||||
|
CREATE TABLE t (val bit(3));
|
||||||
|
INSERT INTO t (val) VALUES (B'000'), (B'100'), (B'111'), (NULL);
|
||||||
|
CREATE INDEX ON t USING hnsw (val bit_hamming_ops);
|
||||||
|
INSERT INTO t (val) VALUES (B'110');
|
||||||
|
SELECT * FROM t ORDER BY val <~> B'111';
|
||||||
|
val
|
||||||
|
-----
|
||||||
|
111
|
||||||
|
110
|
||||||
|
100
|
||||||
|
000
|
||||||
|
(4 rows)
|
||||||
|
|
||||||
|
SELECT COUNT(*) FROM (SELECT * FROM t ORDER BY val <~> (SELECT NULL::bit)) t2;
|
||||||
|
count
|
||||||
|
-------
|
||||||
|
4
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
DROP TABLE t;
|
||||||
21
test/expected/hnsw_jaccard.out
Normal file
21
test/expected/hnsw_jaccard.out
Normal file
@@ -0,0 +1,21 @@
|
|||||||
|
SET enable_seqscan = off;
|
||||||
|
CREATE TABLE t (val bit(4));
|
||||||
|
INSERT INTO t (val) VALUES (B'0000'), (B'1100'), (B'1111'), (NULL);
|
||||||
|
CREATE INDEX ON t USING hnsw (val bit_jaccard_ops);
|
||||||
|
INSERT INTO t (val) VALUES (B'1110');
|
||||||
|
SELECT * FROM t ORDER BY val <%> B'1111';
|
||||||
|
val
|
||||||
|
------
|
||||||
|
1111
|
||||||
|
1110
|
||||||
|
1100
|
||||||
|
0000
|
||||||
|
(4 rows)
|
||||||
|
|
||||||
|
SELECT COUNT(*) FROM (SELECT * FROM t ORDER BY val <%> (SELECT NULL::bit)) t2;
|
||||||
|
count
|
||||||
|
-------
|
||||||
|
4
|
||||||
|
(1 row)
|
||||||
|
|
||||||
|
DROP TABLE t;
|
||||||
@@ -116,8 +116,30 @@ SELECT '[1, ,3]'::vector;
|
|||||||
ERROR: invalid input syntax for type vector: "[1, ,3]"
|
ERROR: invalid input syntax for type vector: "[1, ,3]"
|
||||||
LINE 1: SELECT '[1, ,3]'::vector;
|
LINE 1: SELECT '[1, ,3]'::vector;
|
||||||
^
|
^
|
||||||
|
SELECT '[1,2,3]'::vector(3);
|
||||||
|
vector
|
||||||
|
---------
|
||||||
|
[1,2,3]
|
||||||
|
(1 row)
|
||||||
|
|
||||||
SELECT '[1,2,3]'::vector(2);
|
SELECT '[1,2,3]'::vector(2);
|
||||||
ERROR: expected 2 dimensions, not 3
|
ERROR: expected 2 dimensions, not 3
|
||||||
|
SELECT '[1,2,3]'::vector(3, 2);
|
||||||
|
ERROR: invalid type modifier
|
||||||
|
LINE 1: SELECT '[1,2,3]'::vector(3, 2);
|
||||||
|
^
|
||||||
|
SELECT '[1,2,3]'::vector('a');
|
||||||
|
ERROR: invalid input syntax for type integer: "a"
|
||||||
|
LINE 1: SELECT '[1,2,3]'::vector('a');
|
||||||
|
^
|
||||||
|
SELECT '[1,2,3]'::vector(0);
|
||||||
|
ERROR: dimensions for type vector must be at least 1
|
||||||
|
LINE 1: SELECT '[1,2,3]'::vector(0);
|
||||||
|
^
|
||||||
|
SELECT '[1,2,3]'::vector(16001);
|
||||||
|
ERROR: dimensions for type vector cannot exceed 16000
|
||||||
|
LINE 1: SELECT '[1,2,3]'::vector(16001);
|
||||||
|
^
|
||||||
SELECT unnest('{"[1,2,3]", "[4,5,6]"}'::vector[]);
|
SELECT unnest('{"[1,2,3]", "[4,5,6]"}'::vector[]);
|
||||||
unnest
|
unnest
|
||||||
---------
|
---------
|
||||||
|
|||||||
13
test/sql/bit_functions.sql
Normal file
13
test/sql/bit_functions.sql
Normal file
@@ -0,0 +1,13 @@
|
|||||||
|
SELECT hamming_distance(B'111', B'111');
|
||||||
|
SELECT hamming_distance(B'111', B'110');
|
||||||
|
SELECT hamming_distance(B'111', B'100');
|
||||||
|
SELECT hamming_distance(B'111', B'000');
|
||||||
|
SELECT hamming_distance(B'111', B'00');
|
||||||
|
|
||||||
|
SELECT jaccard_distance(B'1111', B'1111');
|
||||||
|
SELECT jaccard_distance(B'1111', B'1110');
|
||||||
|
SELECT jaccard_distance(B'1111', B'1100');
|
||||||
|
SELECT jaccard_distance(B'1111', B'1000');
|
||||||
|
SELECT jaccard_distance(B'1111', B'0000');
|
||||||
|
SELECT jaccard_distance(B'1100', B'1000');
|
||||||
|
SELECT jaccard_distance(B'1111', B'000');
|
||||||
@@ -48,6 +48,9 @@ SELECT l1_distance('[0,0]', '[0,1]');
|
|||||||
SELECT l1_distance('[1,2]', '[3]');
|
SELECT l1_distance('[1,2]', '[3]');
|
||||||
SELECT l1_distance('[3e38]', '[-3e38]');
|
SELECT l1_distance('[3e38]', '[-3e38]');
|
||||||
|
|
||||||
|
SELECT quantize_binary('[1,0,-1]');
|
||||||
|
SELECT quantize_binary('[0,0.1,-0.2,-0.3,0.4,0.5,0.6,-0.7,0.8,-0.9,1]');
|
||||||
|
|
||||||
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]']) v;
|
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]']) v;
|
||||||
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]', NULL]) v;
|
SELECT avg(v) FROM unnest(ARRAY['[1,2,3]'::vector, '[3,5,7]', NULL]) v;
|
||||||
SELECT avg(v) FROM unnest(ARRAY[]::vector[]) v;
|
SELECT avg(v) FROM unnest(ARRAY[]::vector[]) v;
|
||||||
|
|||||||
12
test/sql/hnsw_hamming.sql
Normal file
12
test/sql/hnsw_hamming.sql
Normal file
@@ -0,0 +1,12 @@
|
|||||||
|
SET enable_seqscan = off;
|
||||||
|
|
||||||
|
CREATE TABLE t (val bit(3));
|
||||||
|
INSERT INTO t (val) VALUES (B'000'), (B'100'), (B'111'), (NULL);
|
||||||
|
CREATE INDEX ON t USING hnsw (val bit_hamming_ops);
|
||||||
|
|
||||||
|
INSERT INTO t (val) VALUES (B'110');
|
||||||
|
|
||||||
|
SELECT * FROM t ORDER BY val <~> B'111';
|
||||||
|
SELECT COUNT(*) FROM (SELECT * FROM t ORDER BY val <~> (SELECT NULL::bit)) t2;
|
||||||
|
|
||||||
|
DROP TABLE t;
|
||||||
12
test/sql/hnsw_jaccard.sql
Normal file
12
test/sql/hnsw_jaccard.sql
Normal file
@@ -0,0 +1,12 @@
|
|||||||
|
SET enable_seqscan = off;
|
||||||
|
|
||||||
|
CREATE TABLE t (val bit(4));
|
||||||
|
INSERT INTO t (val) VALUES (B'0000'), (B'1100'), (B'1111'), (NULL);
|
||||||
|
CREATE INDEX ON t USING hnsw (val bit_jaccard_ops);
|
||||||
|
|
||||||
|
INSERT INTO t (val) VALUES (B'1110');
|
||||||
|
|
||||||
|
SELECT * FROM t ORDER BY val <%> B'1111';
|
||||||
|
SELECT COUNT(*) FROM (SELECT * FROM t ORDER BY val <%> (SELECT NULL::bit)) t2;
|
||||||
|
|
||||||
|
DROP TABLE t;
|
||||||
@@ -22,7 +22,13 @@ SELECT '[1,]'::vector;
|
|||||||
SELECT '[1a]'::vector;
|
SELECT '[1a]'::vector;
|
||||||
SELECT '[1,,3]'::vector;
|
SELECT '[1,,3]'::vector;
|
||||||
SELECT '[1, ,3]'::vector;
|
SELECT '[1, ,3]'::vector;
|
||||||
|
|
||||||
|
SELECT '[1,2,3]'::vector(3);
|
||||||
SELECT '[1,2,3]'::vector(2);
|
SELECT '[1,2,3]'::vector(2);
|
||||||
|
SELECT '[1,2,3]'::vector(3, 2);
|
||||||
|
SELECT '[1,2,3]'::vector('a');
|
||||||
|
SELECT '[1,2,3]'::vector(0);
|
||||||
|
SELECT '[1,2,3]'::vector(16001);
|
||||||
|
|
||||||
SELECT unnest('{"[1,2,3]", "[4,5,6]"}'::vector[]);
|
SELECT unnest('{"[1,2,3]", "[4,5,6]"}'::vector[]);
|
||||||
SELECT '{"[1,2,3]"}'::vector(2)[];
|
SELECT '{"[1,2,3]"}'::vector(2)[];
|
||||||
|
|||||||
137
test/t/020_hnsw_bit_build_recall.pl
Normal file
137
test/t/020_hnsw_bit_build_recall.pl
Normal file
@@ -0,0 +1,137 @@
|
|||||||
|
use strict;
|
||||||
|
use warnings;
|
||||||
|
use PostgresNode;
|
||||||
|
use TestLib;
|
||||||
|
use Test::More;
|
||||||
|
|
||||||
|
my $node;
|
||||||
|
my @queries = ();
|
||||||
|
my @expected;
|
||||||
|
my $limit = 20;
|
||||||
|
my $dim = 52;
|
||||||
|
my $max = 2**$dim;
|
||||||
|
|
||||||
|
sub test_recall
|
||||||
|
{
|
||||||
|
my ($min, $operator) = @_;
|
||||||
|
my $correct = 0;
|
||||||
|
my $total = 0;
|
||||||
|
|
||||||
|
my $explain = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
SET hnsw.ef_search = 100;
|
||||||
|
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator $queries[0] LIMIT $limit;
|
||||||
|
));
|
||||||
|
like($explain, qr/Index Scan/);
|
||||||
|
|
||||||
|
for my $i (0 .. $#queries)
|
||||||
|
{
|
||||||
|
my $actual = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
SET hnsw.ef_search = 100;
|
||||||
|
SELECT i FROM tst ORDER BY v $operator $queries[$i] LIMIT $limit;
|
||||||
|
));
|
||||||
|
my @actual_ids = split("\n", $actual);
|
||||||
|
|
||||||
|
my @expected_ids = split("\n", $expected[$i]);
|
||||||
|
my %expected_set = map { $_ => 1 } @expected_ids;
|
||||||
|
|
||||||
|
foreach (@actual_ids)
|
||||||
|
{
|
||||||
|
if (exists($expected_set{$_}))
|
||||||
|
{
|
||||||
|
$correct++;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
$total += $limit;
|
||||||
|
}
|
||||||
|
|
||||||
|
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Initialize node
|
||||||
|
$node = get_new_node('node');
|
||||||
|
$node->init;
|
||||||
|
$node->start;
|
||||||
|
|
||||||
|
# Create table
|
||||||
|
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||||
|
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v bit($dim));");
|
||||||
|
$node->safe_psql("postgres",
|
||||||
|
"INSERT INTO tst SELECT i, (random() * $max)::bigint::bit($dim) FROM generate_series(1, 10000) i;"
|
||||||
|
);
|
||||||
|
|
||||||
|
# Generate queries
|
||||||
|
for (1 .. 20)
|
||||||
|
{
|
||||||
|
my $r = int(rand() * $max);
|
||||||
|
push(@queries, "${r}::bigint::bit($dim)");
|
||||||
|
}
|
||||||
|
|
||||||
|
# Check each index type
|
||||||
|
my @operators = ("<~>", "<\%>");
|
||||||
|
my @opclasses = ("bit_hamming_ops", "bit_jaccard_ops");
|
||||||
|
|
||||||
|
for my $i (0 .. $#operators)
|
||||||
|
{
|
||||||
|
my $operator = $operators[$i];
|
||||||
|
my $opclass = $opclasses[$i];
|
||||||
|
|
||||||
|
# Get exact results
|
||||||
|
@expected = ();
|
||||||
|
foreach (@queries)
|
||||||
|
{
|
||||||
|
# Handle ties
|
||||||
|
my $res = $node->safe_psql("postgres", qq(
|
||||||
|
WITH top AS (
|
||||||
|
SELECT v $operator $_ AS distance FROM tst ORDER BY v $operator $_ LIMIT $limit
|
||||||
|
)
|
||||||
|
SELECT i FROM tst WHERE (v $operator $_) <= (SELECT MAX(distance) FROM top)
|
||||||
|
));
|
||||||
|
push(@expected, $res);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Build index serially
|
||||||
|
$node->safe_psql("postgres", qq(
|
||||||
|
SET max_parallel_maintenance_workers = 0;
|
||||||
|
CREATE INDEX idx ON tst USING hnsw (v $opclass);
|
||||||
|
));
|
||||||
|
|
||||||
|
# Test approximate results
|
||||||
|
my $min = $operator eq "<\%>" ? 0.96 : 0.99;
|
||||||
|
test_recall($min, $operator);
|
||||||
|
|
||||||
|
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||||
|
|
||||||
|
# Build index in parallel in memory
|
||||||
|
my ($ret, $stdout, $stderr) = $node->psql("postgres", qq(
|
||||||
|
SET client_min_messages = DEBUG;
|
||||||
|
SET min_parallel_table_scan_size = 1;
|
||||||
|
CREATE INDEX idx ON tst USING hnsw (v $opclass);
|
||||||
|
));
|
||||||
|
is($ret, 0, $stderr);
|
||||||
|
like($stderr, qr/using \d+ parallel workers/);
|
||||||
|
|
||||||
|
# Test approximate results
|
||||||
|
test_recall($min, $operator);
|
||||||
|
|
||||||
|
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||||
|
|
||||||
|
# Build index in parallel on disk
|
||||||
|
# Set parallel_workers on table to use workers with low maintenance_work_mem
|
||||||
|
($ret, $stdout, $stderr) = $node->psql("postgres", qq(
|
||||||
|
ALTER TABLE tst SET (parallel_workers = 2);
|
||||||
|
SET client_min_messages = DEBUG;
|
||||||
|
SET maintenance_work_mem = '4MB';
|
||||||
|
CREATE INDEX idx ON tst USING hnsw (v $opclass);
|
||||||
|
ALTER TABLE tst RESET (parallel_workers);
|
||||||
|
));
|
||||||
|
is($ret, 0, $stderr);
|
||||||
|
like($stderr, qr/using \d+ parallel workers/);
|
||||||
|
like($stderr, qr/hnsw graph no longer fits into maintenance_work_mem/);
|
||||||
|
|
||||||
|
$node->safe_psql("postgres", "DROP INDEX idx;");
|
||||||
|
}
|
||||||
|
|
||||||
|
done_testing();
|
||||||
@@ -1,4 +1,4 @@
|
|||||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||||
default_version = '0.6.1'
|
default_version = '0.6.2'
|
||||||
module_pathname = '$libdir/vector'
|
module_pathname = '$libdir/vector'
|
||||||
relocatable = true
|
relocatable = true
|
||||||
|
|||||||
Reference in New Issue
Block a user