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https://github.com/pgvector/pgvector.git
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1 Commits
v0.5.1
...
mvcc-snaps
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
4cd4a19c98 |
@@ -1,7 +1,6 @@
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|||||||
## 0.5.1 (2023-10-10)
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## 0.5.1 (unreleased)
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|
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- Improved performance of HNSW index builds
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- Fixed locking for index scans for HNSW
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- Added check for MVCC-compliant snapshot for index scans
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## 0.5.0 (2023-08-28)
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## 0.5.0 (2023-08-28)
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@@ -2,7 +2,7 @@
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"name": "vector",
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"name": "vector",
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"abstract": "Open-source vector similarity search for Postgres",
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"abstract": "Open-source vector similarity search for Postgres",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"description": "Supports L2 distance, inner product, and cosine distance",
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"version": "0.5.1",
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"version": "0.5.0",
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"maintainer": [
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"maintainer": [
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"Andrew Kane <andrew@ankane.org>"
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"Andrew Kane <andrew@ankane.org>"
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],
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],
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@@ -20,7 +20,7 @@
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"vector": {
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"vector": {
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"file": "sql/vector.sql",
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"file": "sql/vector.sql",
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"docfile": "README.md",
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"docfile": "README.md",
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"version": "0.5.1",
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"version": "0.5.0",
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"abstract": "Open-source vector similarity search for Postgres"
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"abstract": "Open-source vector similarity search for Postgres"
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}
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}
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},
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},
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2
Makefile
2
Makefile
@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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MODULE_big = vector
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MODULE_big = vector
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DATA = $(wildcard sql/*--*.sql)
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DATA = $(wildcard sql/*--*.sql)
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@@ -1,5 +1,5 @@
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EXTENSION = vector
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EXTENSION = vector
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EXTVERSION = 0.5.1
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
|
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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HEADERS = src\vector.h
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@@ -18,7 +18,7 @@ Compile and install the extension (supports Postgres 11+)
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|
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```sh
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```sh
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cd /tmp
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cd /tmp
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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make
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make
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make install # may need sudo
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make install # may need sudo
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@@ -509,7 +509,7 @@ Then use `nmake` to build:
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|
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```cmd
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```cmd
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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set "PGROOT=C:\Program Files\PostgreSQL\15"
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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nmake /F Makefile.win
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nmake /F Makefile.win
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nmake /F Makefile.win install
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nmake /F Makefile.win install
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@@ -530,7 +530,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
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You can also build the image manually:
|
You can also build the image manually:
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|
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```sh
|
```sh
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git clone --branch v0.5.1 https://github.com/pgvector/pgvector.git
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git clone --branch v0.5.0 https://github.com/pgvector/pgvector.git
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cd pgvector
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cd pgvector
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docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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docker build --build-arg PG_MAJOR=15 -t myuser/pgvector .
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```
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```
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@@ -1,2 +0,0 @@
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-- complain if script is sourced in psql, rather than via CREATE EXTENSION
|
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\echo Use "ALTER EXTENSION vector UPDATE TO '0.5.1'" to load this file. \quit
|
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@@ -57,8 +57,6 @@
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
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#define PROGRESS_HNSW_PHASE_LOAD 2
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#define PROGRESS_HNSW_PHASE_LOAD 2
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|
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#define HNSW_MAX_SIZE (BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)) - sizeof(ItemIdData))
|
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|
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#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
|
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
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|
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@@ -112,13 +110,11 @@ typedef struct HnswCandidate
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{
|
{
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HnswElement element;
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HnswElement element;
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float distance;
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float distance;
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bool closer;
|
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} HnswCandidate;
|
} HnswCandidate;
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|
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typedef struct HnswNeighborArray
|
typedef struct HnswNeighborArray
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{
|
{
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int length;
|
int length;
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bool closerSet;
|
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HnswCandidate *items;
|
HnswCandidate *items;
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} HnswNeighborArray;
|
} HnswNeighborArray;
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|
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@@ -222,6 +218,7 @@ typedef HnswNeighborTupleData * HnswNeighborTuple;
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typedef struct HnswScanOpaqueData
|
typedef struct HnswScanOpaqueData
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{
|
{
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bool first;
|
bool first;
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|
Buffer buf;
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List *w;
|
List *w;
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MemoryContext tmpCtx;
|
MemoryContext tmpCtx;
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|
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@@ -262,7 +259,7 @@ typedef struct HnswVacuumState
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/* Methods */
|
/* Methods */
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int HnswGetM(Relation index);
|
int HnswGetM(Relation index);
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int HnswGetEfConstruction(Relation index);
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int HnswGetEfConstruction(Relation index);
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FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
|
FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum);
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bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
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void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
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Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
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@@ -81,6 +81,7 @@ HnswBuildAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **
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HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
|
HnswPageGetOpaque(*page)->nextblkno = BufferGetBlockNumber(newbuf);
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|
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/* Commit */
|
/* Commit */
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|
MarkBufferDirty(*buf);
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GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
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UnlockReleaseBuffer(*buf);
|
UnlockReleaseBuffer(*buf);
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|
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@@ -117,12 +118,12 @@ CreateElementPages(HnswBuildState * buildstate)
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ListCell *lc;
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ListCell *lc;
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||||||
|
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/* Calculate sizes */
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/* Calculate sizes */
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maxSize = HNSW_MAX_SIZE;
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maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
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|
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/* Allocate once */
|
/* Allocate once */
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etup = palloc0(etupSize);
|
etup = palloc0(etupSize);
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ntup = palloc0(BLCKSZ);
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ntup = palloc0(maxSize);
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|
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/* Prepare first page */
|
/* Prepare first page */
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buf = HnswNewBuffer(index, forkNum);
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buf = HnswNewBuffer(index, forkNum);
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@@ -178,6 +179,7 @@ CreateElementPages(HnswBuildState * buildstate)
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insertPage = BufferGetBlockNumber(buf);
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insertPage = BufferGetBlockNumber(buf);
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|
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/* Commit */
|
/* Commit */
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|
MarkBufferDirty(buf);
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GenericXLogFinish(state);
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GenericXLogFinish(state);
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UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
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|
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@@ -225,6 +227,7 @@ CreateNeighborPages(HnswBuildState * buildstate)
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elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
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|
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||||||
/* Commit */
|
/* Commit */
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||||||
|
MarkBufferDirty(buf);
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GenericXLogFinish(state);
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GenericXLogFinish(state);
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UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
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}
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}
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@@ -135,7 +135,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
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etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
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ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
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combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
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maxSize = HNSW_MAX_SIZE;
|
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
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||||||
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
|
minCombinedSize = etupSize + HNSW_NEIGHBOR_TUPLE_SIZE(0, m) + sizeof(ItemIdData);
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||||||
|
|
||||||
/* Prepare element tuple */
|
/* Prepare element tuple */
|
||||||
@@ -202,6 +202,8 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
HnswInsertAppendPage(index, &newbuf, &newpage, state, page);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
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||||||
|
MarkBufferDirty(newbuf);
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||||||
|
MarkBufferDirty(buf);
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GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
@@ -268,6 +270,9 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
|
if (nbuf != buf)
|
||||||
|
MarkBufferDirty(nbuf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
@@ -386,6 +391,7 @@ HnswUpdateNeighborPages(Relation index, FmgrInfo *procinfo, Oid collation, HnswE
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
@@ -439,6 +445,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
|
|||||||
@@ -101,6 +101,7 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
scan = RelationGetIndexScan(index, nkeys, norderbys);
|
||||||
|
|
||||||
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
so = (HnswScanOpaque) palloc(sizeof(HnswScanOpaqueData));
|
||||||
|
so->buf = InvalidBuffer;
|
||||||
so->first = true;
|
so->first = true;
|
||||||
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
so->tmpCtx = AllocSetContextCreate(CurrentMemoryContext,
|
||||||
"Hnsw scan temporary context",
|
"Hnsw scan temporary context",
|
||||||
@@ -113,6 +114,12 @@ hnswbeginscan(Relation index, int nkeys, int norderbys)
|
|||||||
|
|
||||||
scan->opaque = so;
|
scan->opaque = so;
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
||||||
|
* before marking tuples as deleted.
|
||||||
|
*/
|
||||||
|
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||||
|
|
||||||
return scan;
|
return scan;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -160,25 +167,11 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan hnsw index without order");
|
elog(ERROR, "cannot scan hnsw index without order");
|
||||||
|
|
||||||
/* Requires MVCC-compliant snapshot as not able to maintain a pin */
|
|
||||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
|
||||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
|
||||||
elog(ERROR, "non-MVCC snapshots are not supported with hnsw");
|
|
||||||
|
|
||||||
/* Get scan value */
|
/* Get scan value */
|
||||||
value = GetScanValue(scan);
|
value = GetScanValue(scan);
|
||||||
|
|
||||||
/*
|
|
||||||
* Get a shared lock. This allows vacuum to ensure no in-flight scans
|
|
||||||
* before marking tuples as deleted.
|
|
||||||
*/
|
|
||||||
LockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
|
||||||
|
|
||||||
so->w = GetScanItems(scan, value);
|
so->w = GetScanItems(scan, value);
|
||||||
|
|
||||||
/* Release shared lock */
|
|
||||||
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
|
||||||
|
|
||||||
so->first = false;
|
so->first = false;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -186,6 +179,7 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
{
|
{
|
||||||
HnswCandidate *hc = llast(so->w);
|
HnswCandidate *hc = llast(so->w);
|
||||||
ItemPointer heaptid;
|
ItemPointer heaptid;
|
||||||
|
BlockNumber indexblkno;
|
||||||
|
|
||||||
/* Move to next element if no valid heap TIDs */
|
/* Move to next element if no valid heap TIDs */
|
||||||
if (list_length(hc->element->heaptids) == 0)
|
if (list_length(hc->element->heaptids) == 0)
|
||||||
@@ -195,6 +189,7 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
}
|
}
|
||||||
|
|
||||||
heaptid = llast(hc->element->heaptids);
|
heaptid = llast(hc->element->heaptids);
|
||||||
|
indexblkno = hc->element->blkno;
|
||||||
|
|
||||||
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
hc->element->heaptids = list_delete_last(hc->element->heaptids);
|
||||||
|
|
||||||
@@ -206,6 +201,18 @@ hnswgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *heaptid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
/* Unpin buffer */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
|
/*
|
||||||
|
* An index scan must maintain a pin on the index page holding the
|
||||||
|
* item last returned by amgettuple
|
||||||
|
*
|
||||||
|
* https://www.postgresql.org/docs/current/index-locking.html
|
||||||
|
*/
|
||||||
|
so->buf = ReadBuffer(scan->indexRelation, indexblkno);
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
@@ -222,6 +229,13 @@ hnswendscan(IndexScanDesc scan)
|
|||||||
{
|
{
|
||||||
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
|
||||||
|
|
||||||
|
/* Release pin */
|
||||||
|
if (BufferIsValid(so->buf))
|
||||||
|
ReleaseBuffer(so->buf);
|
||||||
|
|
||||||
|
/* Release shared lock */
|
||||||
|
UnlockPage(scan->indexRelation, HNSW_SCAN_LOCK, ShareLock);
|
||||||
|
|
||||||
MemoryContextDelete(so->tmpCtx);
|
MemoryContextDelete(so->tmpCtx);
|
||||||
|
|
||||||
pfree(so);
|
pfree(so);
|
||||||
|
|||||||
137
src/hnswutils.c
137
src/hnswutils.c
@@ -38,12 +38,12 @@ HnswGetEfConstruction(Relation index)
|
|||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
HnswOptionalProcInfo(Relation index, uint16 procnum)
|
HnswOptionalProcInfo(Relation rel, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(index, 1, procnum);
|
return index_getprocinfo(rel, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -117,6 +117,7 @@ HnswInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogState *
|
|||||||
void
|
void
|
||||||
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
HnswCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -139,21 +140,9 @@ HnswInitNeighbors(HnswElement element, int m)
|
|||||||
a = &element->neighbors[lc];
|
a = &element->neighbors[lc];
|
||||||
a->length = 0;
|
a->length = 0;
|
||||||
a->items = palloc(sizeof(HnswCandidate) * lm);
|
a->items = palloc(sizeof(HnswCandidate) * lm);
|
||||||
a->closerSet = false;
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Free neighbors
|
|
||||||
*/
|
|
||||||
static void
|
|
||||||
HnswFreeNeighbors(HnswElement element)
|
|
||||||
{
|
|
||||||
for (int lc = 0; lc <= element->level; lc++)
|
|
||||||
pfree(element->neighbors[lc].items);
|
|
||||||
pfree(element->neighbors);
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Allocate an element
|
* Allocate an element
|
||||||
*/
|
*/
|
||||||
@@ -185,8 +174,10 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
|
|||||||
void
|
void
|
||||||
HnswFreeElement(HnswElement element)
|
HnswFreeElement(HnswElement element)
|
||||||
{
|
{
|
||||||
HnswFreeNeighbors(element);
|
|
||||||
list_free_deep(element->heaptids);
|
list_free_deep(element->heaptids);
|
||||||
|
for (int lc = 0; lc <= element->level; lc++)
|
||||||
|
pfree(element->neighbors[lc].items);
|
||||||
|
pfree(element->neighbors);
|
||||||
pfree(element->vec);
|
pfree(element->vec);
|
||||||
pfree(element);
|
pfree(element);
|
||||||
}
|
}
|
||||||
@@ -693,34 +684,6 @@ HnswSearchLayer(Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *pro
|
|||||||
return w;
|
return w;
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
|
||||||
* Compare candidate distances
|
|
||||||
*/
|
|
||||||
static int
|
|
||||||
#if PG_VERSION_NUM >= 130000
|
|
||||||
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
|
||||||
#else
|
|
||||||
CompareCandidateDistances(const void *a, const void *b)
|
|
||||||
#endif
|
|
||||||
{
|
|
||||||
HnswCandidate *hca = lfirst((ListCell *) a);
|
|
||||||
HnswCandidate *hcb = lfirst((ListCell *) b);
|
|
||||||
|
|
||||||
if (hca->distance < hcb->distance)
|
|
||||||
return 1;
|
|
||||||
|
|
||||||
if (hca->distance > hcb->distance)
|
|
||||||
return -1;
|
|
||||||
|
|
||||||
if (hca->element < hcb->element)
|
|
||||||
return 1;
|
|
||||||
|
|
||||||
if (hca->element > hcb->element)
|
|
||||||
return -1;
|
|
||||||
|
|
||||||
return 0;
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Calculate the distance between elements
|
* Calculate the distance between elements
|
||||||
*/
|
*/
|
||||||
@@ -777,77 +740,33 @@ CheckElementCloser(HnswCandidate * e, List *r, int lc, FmgrInfo *procinfo, Oid c
|
|||||||
* Algorithm 4 from paper
|
* Algorithm 4 from paper
|
||||||
*/
|
*/
|
||||||
static List *
|
static List *
|
||||||
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswElement e2, HnswCandidate * newCandidate, HnswCandidate * *pruned, bool sortCandidates)
|
SelectNeighbors(List *c, int m, int lc, FmgrInfo *procinfo, Oid collation, HnswCandidate * *pruned)
|
||||||
{
|
{
|
||||||
List *r = NIL;
|
List *r = NIL;
|
||||||
List *w = list_copy(c);
|
List *w = list_copy(c);
|
||||||
pairingheap *wd;
|
pairingheap *wd;
|
||||||
bool mustCalculate = !e2->neighbors[lc].closerSet;
|
|
||||||
List *added = NIL;
|
|
||||||
bool removedAny = false;
|
|
||||||
|
|
||||||
if (list_length(w) <= m)
|
if (list_length(w) <= m)
|
||||||
return w;
|
return w;
|
||||||
|
|
||||||
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
wd = pairingheap_allocate(CompareNearestCandidates, NULL);
|
||||||
|
|
||||||
/* Ensure order of candidates is deterministic for closer caching */
|
|
||||||
if (sortCandidates)
|
|
||||||
list_sort(w, CompareCandidateDistances);
|
|
||||||
|
|
||||||
while (list_length(w) > 0 && list_length(r) < m)
|
while (list_length(w) > 0 && list_length(r) < m)
|
||||||
{
|
{
|
||||||
/* Assumes w is already ordered desc */
|
/* Assumes w is already ordered desc */
|
||||||
HnswCandidate *e = llast(w);
|
HnswCandidate *e = llast(w);
|
||||||
|
bool closer;
|
||||||
|
|
||||||
w = list_delete_last(w);
|
w = list_delete_last(w);
|
||||||
|
|
||||||
/* Use previous state of r and wd to skip work when possible */
|
closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
||||||
if (mustCalculate)
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
else if (list_length(added) > 0)
|
|
||||||
{
|
|
||||||
/*
|
|
||||||
* If the current candidate was closer, we only need to compare it
|
|
||||||
* with the other candidates that we have added.
|
|
||||||
*/
|
|
||||||
if (e->closer)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, added, lc, procinfo, collation);
|
|
||||||
|
|
||||||
if (!e->closer)
|
if (closer)
|
||||||
removedAny = true;
|
|
||||||
}
|
|
||||||
else
|
|
||||||
{
|
|
||||||
/*
|
|
||||||
* If we have removed any candidates from closer, a candidate
|
|
||||||
* that was not closer earlier might now be.
|
|
||||||
*/
|
|
||||||
if (removedAny)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
if (e->closer)
|
|
||||||
added = lappend(added, e);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
else if (e == newCandidate)
|
|
||||||
{
|
|
||||||
e->closer = CheckElementCloser(e, r, lc, procinfo, collation);
|
|
||||||
if (e->closer)
|
|
||||||
added = lappend(added, e);
|
|
||||||
}
|
|
||||||
|
|
||||||
if (e->closer)
|
|
||||||
r = lappend(r, e);
|
r = lappend(r, e);
|
||||||
else
|
else
|
||||||
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
pairingheap_add(wd, &(CreatePairingHeapNode(e)->ph_node));
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Cached value can only be used in future if sorted deterministically */
|
|
||||||
e2->neighbors[lc].closerSet = sortCandidates;
|
|
||||||
|
|
||||||
/* Keep pruned connections */
|
/* Keep pruned connections */
|
||||||
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
while (!pairingheap_is_empty(wd) && list_length(r) < m)
|
||||||
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
r = lappend(r, ((HnswPairingHeapNode *) pairingheap_remove_first(wd))->inner);
|
||||||
@@ -901,6 +820,28 @@ AddConnections(HnswElement element, List *neighbors, int m, int lc)
|
|||||||
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
a->items[a->length++] = *((HnswCandidate *) lfirst(lc2));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Compare candidate distances
|
||||||
|
*/
|
||||||
|
static int
|
||||||
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
CompareCandidateDistances(const ListCell *a, const ListCell *b)
|
||||||
|
#else
|
||||||
|
CompareCandidateDistances(const void *a, const void *b)
|
||||||
|
#endif
|
||||||
|
{
|
||||||
|
HnswCandidate *hca = lfirst((ListCell *) a);
|
||||||
|
HnswCandidate *hcb = lfirst((ListCell *) b);
|
||||||
|
|
||||||
|
if (hca->distance < hcb->distance)
|
||||||
|
return 1;
|
||||||
|
|
||||||
|
if (hca->distance > hcb->distance)
|
||||||
|
return -1;
|
||||||
|
|
||||||
|
return 0;
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Update connections
|
* Update connections
|
||||||
*/
|
*/
|
||||||
@@ -954,12 +895,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
|||||||
{
|
{
|
||||||
List *c = NIL;
|
List *c = NIL;
|
||||||
|
|
||||||
/* Add candidates */
|
/* Add and sort candidates */
|
||||||
for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
|
||||||
c = lappend(c, ¤tNeighbors->items[i]);
|
c = lappend(c, ¤tNeighbors->items[i]);
|
||||||
c = lappend(c, &hc2);
|
c = lappend(c, &hc2);
|
||||||
|
list_sort(c, CompareCandidateDistances);
|
||||||
|
|
||||||
SelectNeighbors(c, m, lc, procinfo, collation, hc->element, &hc2, &pruned, true);
|
SelectNeighbors(c, m, lc, procinfo, collation, &pruned);
|
||||||
|
|
||||||
/* Should not happen */
|
/* Should not happen */
|
||||||
if (pruned == NULL)
|
if (pruned == NULL)
|
||||||
@@ -1058,12 +1000,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
else
|
else
|
||||||
lw = w;
|
lw = w;
|
||||||
|
|
||||||
/*
|
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, NULL);
|
||||||
* Candidates are sorted, but not deterministically. Could set
|
|
||||||
* sortCandidates to true for in-memory builds to enable closer
|
|
||||||
* caching, but there does not seem to be a difference in performance.
|
|
||||||
*/
|
|
||||||
neighbors = SelectNeighbors(lw, lm, lc, procinfo, collation, element, NULL, NULL, false);
|
|
||||||
|
|
||||||
AddConnections(element, neighbors, lm, lc);
|
AddConnections(element, neighbors, lm, lc);
|
||||||
|
|
||||||
|
|||||||
@@ -128,7 +128,10 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
|||||||
blkno = HnswPageGetOpaque(page)->nextblkno;
|
blkno = HnswPageGetOpaque(page)->nextblkno;
|
||||||
|
|
||||||
if (updated)
|
if (updated)
|
||||||
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
}
|
||||||
else
|
else
|
||||||
GenericXLogAbort(state);
|
GenericXLogAbort(state);
|
||||||
|
|
||||||
@@ -226,6 +229,7 @@ RepairGraphElement(HnswVacuumState * vacuumstate, HnswElement element, HnswEleme
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
@@ -543,6 +547,9 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(buf);
|
||||||
|
if (nbuf != buf)
|
||||||
|
MarkBufferDirty(nbuf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
if (nbuf != buf)
|
if (nbuf != buf)
|
||||||
UnlockReleaseBuffer(nbuf);
|
UnlockReleaseBuffer(nbuf);
|
||||||
|
|||||||
@@ -506,30 +506,29 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
Size listSize;
|
OffsetNumber offno;
|
||||||
|
Size itemsz;
|
||||||
IvfflatList list;
|
IvfflatList list;
|
||||||
|
|
||||||
listSize = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
||||||
list = palloc(listSize);
|
list = palloc(itemsz);
|
||||||
|
|
||||||
buf = IvfflatNewBuffer(index, forkNum);
|
buf = IvfflatNewBuffer(index, forkNum);
|
||||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||||
|
|
||||||
for (int i = 0; i < lists; i++)
|
for (int i = 0; i < lists; i++)
|
||||||
{
|
{
|
||||||
OffsetNumber offno;
|
|
||||||
|
|
||||||
/* Load list */
|
/* Load list */
|
||||||
list->startPage = InvalidBlockNumber;
|
list->startPage = InvalidBlockNumber;
|
||||||
list->insertPage = InvalidBlockNumber;
|
list->insertPage = InvalidBlockNumber;
|
||||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
||||||
|
|
||||||
/* Ensure free space */
|
/* Ensure free space */
|
||||||
if (PageGetFreeSpace(page) < listSize)
|
if (PageGetFreeSpace(page) < itemsz)
|
||||||
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
||||||
|
|
||||||
/* Add the item */
|
/* Add the item */
|
||||||
offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
|
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false);
|
||||||
if (offno == InvalidOffsetNumber)
|
if (offno == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
|
|||||||
@@ -275,7 +275,7 @@ VectorArray VectorArrayInit(int maxlen, int dimensions);
|
|||||||
void VectorArrayFree(VectorArray arr);
|
void VectorArrayFree(VectorArray arr);
|
||||||
void PrintVectorArray(char *msg, VectorArray arr);
|
void PrintVectorArray(char *msg, VectorArray arr);
|
||||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||||
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum);
|
||||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
int IvfflatGetLists(Relation index);
|
int IvfflatGetLists(Relation index);
|
||||||
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
||||||
|
|||||||
@@ -11,37 +11,36 @@
|
|||||||
* Find the list that minimizes the distance function
|
* Find the list that minimizes the distance function
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||||
{
|
{
|
||||||
|
Buffer cbuf;
|
||||||
|
Page cpage;
|
||||||
|
IvfflatList list;
|
||||||
|
double distance;
|
||||||
double minDistance = DBL_MAX;
|
double minDistance = DBL_MAX;
|
||||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
|
OffsetNumber offno;
|
||||||
|
OffsetNumber maxoffno;
|
||||||
|
|
||||||
/* Avoid compiler warning */
|
/* Avoid compiler warning */
|
||||||
listInfo->blkno = nextblkno;
|
listInfo->blkno = nextblkno;
|
||||||
listInfo->offno = FirstOffsetNumber;
|
listInfo->offno = FirstOffsetNumber;
|
||||||
|
|
||||||
procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC);
|
||||||
collation = index->rd_indcollation[0];
|
collation = rel->rd_indcollation[0];
|
||||||
|
|
||||||
/* Search all list pages */
|
/* Search all list pages */
|
||||||
while (BlockNumberIsValid(nextblkno))
|
while (BlockNumberIsValid(nextblkno))
|
||||||
{
|
{
|
||||||
Buffer cbuf;
|
cbuf = ReadBuffer(rel, nextblkno);
|
||||||
Page cpage;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
cbuf = ReadBuffer(index, nextblkno);
|
|
||||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||||
cpage = BufferGetPage(cbuf);
|
cpage = BufferGetPage(cbuf);
|
||||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||||
|
|
||||||
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||||
{
|
{
|
||||||
IvfflatList list;
|
|
||||||
double distance;
|
|
||||||
|
|
||||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||||
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
||||||
|
|
||||||
@@ -64,7 +63,7 @@ FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo
|
|||||||
* Insert a tuple into the index
|
* Insert a tuple into the index
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||||
{
|
{
|
||||||
IndexTuple itup;
|
IndexTuple itup;
|
||||||
Datum value;
|
Datum value;
|
||||||
@@ -81,33 +80,33 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Normalize if needed */
|
/* Normalize if needed */
|
||||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
|
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL))
|
||||||
return;
|
return;
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Find the insert page - sets the page and list info */
|
/* Find the insert page - sets the page and list info */
|
||||||
FindInsertPage(index, values, &insertPage, &listInfo);
|
FindInsertPage(rel, values, &insertPage, &listInfo);
|
||||||
Assert(BlockNumberIsValid(insertPage));
|
Assert(BlockNumberIsValid(insertPage));
|
||||||
originalInsertPage = insertPage;
|
originalInsertPage = insertPage;
|
||||||
|
|
||||||
/* Form tuple */
|
/* Form tuple */
|
||||||
itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
|
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull);
|
||||||
itup->t_tid = *heap_tid;
|
itup->t_tid = *heap_tid;
|
||||||
|
|
||||||
/* Get tuple size */
|
/* Get tuple size */
|
||||||
itemsz = MAXALIGN(IndexTupleSize(itup));
|
itemsz = MAXALIGN(IndexTupleSize(itup));
|
||||||
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)) - sizeof(ItemIdData));
|
Assert(itemsz <= BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(IvfflatPageOpaqueData)));
|
||||||
|
|
||||||
/* Find a page to insert the item */
|
/* Find a page to insert the item */
|
||||||
for (;;)
|
for (;;)
|
||||||
{
|
{
|
||||||
buf = ReadBuffer(index, insertPage);
|
buf = ReadBuffer(rel, insertPage);
|
||||||
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
||||||
|
|
||||||
state = GenericXLogStart(index);
|
state = GenericXLogStart(rel);
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
|
|
||||||
if (PageGetFreeSpace(page) >= itemsz)
|
if (PageGetFreeSpace(page) >= itemsz)
|
||||||
@@ -127,9 +126,9 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
Page newpage;
|
Page newpage;
|
||||||
|
|
||||||
/* Add a new page */
|
/* Add a new page */
|
||||||
LockRelationForExtension(index, ExclusiveLock);
|
LockRelationForExtension(rel, ExclusiveLock);
|
||||||
newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
|
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM);
|
||||||
UnlockRelationForExtension(index, ExclusiveLock);
|
UnlockRelationForExtension(rel, ExclusiveLock);
|
||||||
|
|
||||||
/* Init new page */
|
/* Init new page */
|
||||||
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
||||||
@@ -142,13 +141,15 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
IvfflatPageGetOpaque(page)->nextblkno = insertPage;
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(newbuf);
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
|
|
||||||
/* Unlock previous buffer */
|
/* Unlock previous buffer */
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
/* Prepare new buffer */
|
/* Prepare new buffer */
|
||||||
state = GenericXLogStart(index);
|
state = GenericXLogStart(rel);
|
||||||
buf = newbuf;
|
buf = newbuf;
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
break;
|
break;
|
||||||
@@ -157,13 +158,13 @@ InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, R
|
|||||||
|
|
||||||
/* Add to next offset */
|
/* Add to next offset */
|
||||||
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel));
|
||||||
|
|
||||||
IvfflatCommitBuffer(buf, state);
|
IvfflatCommitBuffer(buf, state);
|
||||||
|
|
||||||
/* Update the insert page */
|
/* Update the insert page */
|
||||||
if (insertPage != originalInsertPage)
|
if (insertPage != originalInsertPage)
|
||||||
IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
|
|||||||
@@ -17,6 +17,10 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
int64 j;
|
int64 j;
|
||||||
|
double distance;
|
||||||
|
double sum;
|
||||||
|
double choice;
|
||||||
|
Vector *vec;
|
||||||
float *weight = palloc(samples->length * sizeof(float));
|
float *weight = palloc(samples->length * sizeof(float));
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = samples->length;
|
int numSamples = samples->length;
|
||||||
@@ -29,21 +33,17 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
centers->length++;
|
centers->length++;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
weight[j] = FLT_MAX;
|
weight[j] = DBL_MAX;
|
||||||
|
|
||||||
for (int i = 0; i < numCenters; i++)
|
for (int i = 0; i < numCenters; i++)
|
||||||
{
|
{
|
||||||
double sum;
|
|
||||||
double choice;
|
|
||||||
|
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
sum = 0.0;
|
sum = 0.0;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(samples, j);
|
vec = VectorArrayGet(samples, j);
|
||||||
double distance;
|
|
||||||
|
|
||||||
/* Only need to compute distance for new center */
|
/* Only need to compute distance for new center */
|
||||||
/* TODO Use triangle inequality to reduce distance calculations */
|
/* TODO Use triangle inequality to reduce distance calculations */
|
||||||
@@ -112,6 +112,7 @@ CompareVectors(const void *a, const void *b)
|
|||||||
static void
|
static void
|
||||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
|
Vector *vec;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
Oid collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||||
@@ -122,7 +123,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||||
for (int i = 0; i < samples->length; i++)
|
for (int i = 0; i < samples->length; i++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(samples, i);
|
vec = VectorArrayGet(samples, i);
|
||||||
|
|
||||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||||
{
|
{
|
||||||
@@ -135,7 +136,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Fill remaining with random data */
|
/* Fill remaining with random data */
|
||||||
while (centers->length < centers->maxlen)
|
while (centers->length < centers->maxlen)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(centers, centers->length);
|
vec = VectorArrayGet(centers, centers->length);
|
||||||
|
|
||||||
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
||||||
vec->dim = dimensions;
|
vec->dim = dimensions;
|
||||||
@@ -167,6 +168,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
Oid collation;
|
Oid collation;
|
||||||
Vector *vec;
|
Vector *vec;
|
||||||
Vector *newCenter;
|
Vector *newCenter;
|
||||||
|
int iteration;
|
||||||
int64 j;
|
int64 j;
|
||||||
int64 k;
|
int64 k;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
@@ -180,6 +182,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
float *s;
|
float *s;
|
||||||
float *halfcdist;
|
float *halfcdist;
|
||||||
float *newcdist;
|
float *newcdist;
|
||||||
|
int changes;
|
||||||
|
double minDistance;
|
||||||
|
int closestCenter;
|
||||||
|
double distance;
|
||||||
|
bool rj;
|
||||||
|
bool rjreset;
|
||||||
|
double dxcx;
|
||||||
|
double dxc;
|
||||||
|
|
||||||
/* Calculate allocation sizes */
|
/* Calculate allocation sizes */
|
||||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||||
@@ -237,14 +247,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
float minDistance = FLT_MAX;
|
minDistance = DBL_MAX;
|
||||||
int closestCenter = 0;
|
closestCenter = 0;
|
||||||
|
|
||||||
/* Find closest center */
|
/* Find closest center */
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
/* TODO Use Lemma 1 in k-means++ initialization */
|
/* TODO Use Lemma 1 in k-means++ initialization */
|
||||||
float distance = lowerBound[j * numCenters + k];
|
distance = lowerBound[j * numCenters + k];
|
||||||
|
|
||||||
if (distance < minDistance)
|
if (distance < minDistance)
|
||||||
{
|
{
|
||||||
@@ -258,14 +268,13 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Give 500 iterations to converge */
|
/* Give 500 iterations to converge */
|
||||||
for (int iteration = 0; iteration < 500; iteration++)
|
for (iteration = 0; iteration < 500; iteration++)
|
||||||
{
|
{
|
||||||
int changes = 0;
|
|
||||||
bool rjreset;
|
|
||||||
|
|
||||||
/* Can take a while, so ensure we can interrupt */
|
/* Can take a while, so ensure we can interrupt */
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
|
changes = 0;
|
||||||
|
|
||||||
/* Step 1: For all centers, compute distance */
|
/* Step 1: For all centers, compute distance */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
@@ -273,8 +282,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = j + 1; k < numCenters; k++)
|
for (k = j + 1; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
halfcdist[j * numCenters + k] = distance;
|
halfcdist[j * numCenters + k] = distance;
|
||||||
halfcdist[k * numCenters + j] = distance;
|
halfcdist[k * numCenters + j] = distance;
|
||||||
}
|
}
|
||||||
@@ -283,12 +291,10 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* For all centers c, compute s(c) */
|
/* For all centers c, compute s(c) */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
float minDistance = FLT_MAX;
|
minDistance = DBL_MAX;
|
||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance;
|
|
||||||
|
|
||||||
if (j == k)
|
if (j == k)
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
@@ -304,8 +310,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
bool rj;
|
|
||||||
|
|
||||||
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
||||||
if (upperBound[j] <= s[closestCenters[j]])
|
if (upperBound[j] <= s[closestCenters[j]])
|
||||||
continue;
|
continue;
|
||||||
@@ -314,8 +318,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float dxcx;
|
|
||||||
|
|
||||||
/* Step 3: For all remaining points x and centers c */
|
/* Step 3: For all remaining points x and centers c */
|
||||||
if (k == closestCenters[j])
|
if (k == closestCenters[j])
|
||||||
continue;
|
continue;
|
||||||
@@ -345,7 +347,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Step 3b */
|
/* Step 3b */
|
||||||
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
||||||
{
|
{
|
||||||
float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
/* d(x,c) calculated */
|
/* d(x,c) calculated */
|
||||||
lowerBound[j * numCenters + k] = dxc;
|
lowerBound[j * numCenters + k] = dxc;
|
||||||
@@ -359,6 +361,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
changes++;
|
changes++;
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
@@ -375,8 +378,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
int closestCenter;
|
|
||||||
|
|
||||||
vec = VectorArrayGet(samples, j);
|
vec = VectorArrayGet(samples, j);
|
||||||
closestCenter = closestCenters[j];
|
closestCenter = closestCenters[j];
|
||||||
|
|
||||||
@@ -425,7 +426,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
{
|
{
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
float distance = lowerBound[j * numCenters + k] - newcdist[k];
|
distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||||
|
|
||||||
if (distance < 0)
|
if (distance < 0)
|
||||||
distance = 0;
|
distance = 0;
|
||||||
@@ -441,7 +442,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
/* Step 7 */
|
/* Step 7 */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
|
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions));
|
||||||
|
|
||||||
if (changes == 0 && iteration != 0)
|
if (changes == 0 && iteration != 0)
|
||||||
break;
|
break;
|
||||||
@@ -464,6 +465,9 @@ static void
|
|||||||
CheckCenters(Relation index, VectorArray centers)
|
CheckCenters(Relation index, VectorArray centers)
|
||||||
{
|
{
|
||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
|
Oid collation;
|
||||||
|
Vector *vec;
|
||||||
|
double norm;
|
||||||
|
|
||||||
if (centers->length != centers->maxlen)
|
if (centers->length != centers->maxlen)
|
||||||
elog(ERROR, "Not enough centers. Please report a bug.");
|
elog(ERROR, "Not enough centers. Please report a bug.");
|
||||||
@@ -471,7 +475,7 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
/* Ensure no NaN or infinite values */
|
/* Ensure no NaN or infinite values */
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
Vector *vec = VectorArrayGet(centers, i);
|
vec = VectorArrayGet(centers, i);
|
||||||
|
|
||||||
for (int j = 0; j < vec->dim; j++)
|
for (int j = 0; j < vec->dim; j++)
|
||||||
{
|
{
|
||||||
@@ -497,12 +501,11 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
Oid collation = index->rd_indcollation[0];
|
collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||||
|
|
||||||
if (norm == 0)
|
if (norm == 0)
|
||||||
elog(ERROR, "Zero norm detected. Please report a bug.");
|
elog(ERROR, "Zero norm detected. Please report a bug.");
|
||||||
}
|
}
|
||||||
|
|||||||
@@ -288,8 +288,7 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
if (scan->orderByData == NULL)
|
if (scan->orderByData == NULL)
|
||||||
elog(ERROR, "cannot scan ivfflat index without order");
|
elog(ERROR, "cannot scan ivfflat index without order");
|
||||||
|
|
||||||
/* Requires MVCC-compliant snapshot as not able to pin during sorting */
|
/* Safety check */
|
||||||
/* https://www.postgresql.org/docs/current/index-locking.html */
|
|
||||||
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
if (!IsMVCCSnapshot(scan->xs_snapshot))
|
||||||
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
elog(ERROR, "non-MVCC snapshots are not supported with ivfflat");
|
||||||
|
|
||||||
@@ -327,6 +326,12 @@ ivfflatgettuple(IndexScanDesc scan, ScanDirection dir)
|
|||||||
scan->xs_ctup.t_self = *heaptid;
|
scan->xs_ctup.t_self = *heaptid;
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Since no pinning during sorting, requires MVCC-compliant snapshot.
|
||||||
|
* Also, cannot kill prior tuples, since heap TID may be recycled.
|
||||||
|
* https://www.postgresql.org/docs/current/index-locking.html
|
||||||
|
*/
|
||||||
|
|
||||||
scan->xs_recheckorderby = false;
|
scan->xs_recheckorderby = false;
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
|
|||||||
@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
|
|||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
IvfflatOptionalProcInfo(Relation index, uint16 procnum)
|
IvfflatOptionalProcInfo(Relation rel, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(index, 1, procnum);
|
return index_getprocinfo(rel, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -136,6 +136,7 @@ IvfflatInitRegisterPage(Relation index, Buffer *buf, Page *page, GenericXLogStat
|
|||||||
void
|
void
|
||||||
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
IvfflatCommitBuffer(Buffer buf, GenericXLogState *state)
|
||||||
{
|
{
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -159,6 +160,8 @@ IvfflatAppendPage(Relation index, Buffer *buf, Page *page, GenericXLogState **st
|
|||||||
IvfflatInitPage(newbuf, newpage);
|
IvfflatInitPage(newbuf, newpage);
|
||||||
|
|
||||||
/* Commit */
|
/* Commit */
|
||||||
|
MarkBufferDirty(*buf);
|
||||||
|
MarkBufferDirty(newbuf);
|
||||||
GenericXLogFinish(*state);
|
GenericXLogFinish(*state);
|
||||||
|
|
||||||
/* Unlock */
|
/* Unlock */
|
||||||
|
|||||||
@@ -107,6 +107,7 @@ ivfflatbulkdelete(IndexVacuumInfo *info, IndexBulkDeleteResult *stats,
|
|||||||
{
|
{
|
||||||
/* Delete tuples */
|
/* Delete tuples */
|
||||||
PageIndexMultiDelete(page, deletable, ndeletable);
|
PageIndexMultiDelete(page, deletable, ndeletable);
|
||||||
|
MarkBufferDirty(buf);
|
||||||
GenericXLogFinish(state);
|
GenericXLogFinish(state);
|
||||||
}
|
}
|
||||||
else
|
else
|
||||||
|
|||||||
@@ -1,4 +1,4 @@
|
|||||||
comment = 'vector data type and ivfflat and hnsw access methods'
|
comment = 'vector data type and ivfflat and hnsw access methods'
|
||||||
default_version = '0.5.1'
|
default_version = '0.5.0'
|
||||||
module_pathname = '$libdir/vector'
|
module_pathname = '$libdir/vector'
|
||||||
relocatable = true
|
relocatable = true
|
||||||
|
|||||||
Reference in New Issue
Block a user