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hnsw-query
...
hnsw-datum
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
c8e4bf1c3c |
11
src/hnsw.h
11
src/hnsw.h
@@ -362,11 +362,6 @@ typedef struct HnswVacuumState
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MemoryContext tmpCtx;
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MemoryContext tmpCtx;
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} HnswVacuumState;
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} HnswVacuumState;
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typedef struct HnswQuery
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{
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Datum value;
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} HnswQuery;
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/* Methods */
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/* Methods */
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int HnswGetM(Relation index);
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int HnswGetM(Relation index);
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int HnswGetEfConstruction(Relation index);
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int HnswGetEfConstruction(Relation index);
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@@ -375,14 +370,14 @@ bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * re
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Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
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Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
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void HnswInitPage(Buffer buf, Page page);
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void HnswInitPage(Buffer buf, Page page);
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void HnswInit(void);
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void HnswInit(void);
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List *HnswSearchLayer(char *base, HnswQuery * q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
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List *HnswSearchLayer(char *base, Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement);
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HnswElement HnswGetEntryPoint(Relation index);
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HnswElement HnswGetEntryPoint(Relation index);
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void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
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void HnswGetMetaPageInfo(Relation index, int *m, HnswElement * entryPoint);
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void *HnswAlloc(HnswAllocator * allocator, Size size);
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void *HnswAlloc(HnswAllocator * allocator, Size size);
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HnswElement HnswInitElement(char *base, ItemPointer tid, int m, double ml, int maxLevel, HnswAllocator * alloc);
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HnswElement HnswInitElement(char *base, ItemPointer tid, int m, double ml, int maxLevel, HnswAllocator * alloc);
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HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
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HnswElement HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno);
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void HnswFindElementNeighbors(char *base, HnswElement element, HnswElement entryPoint, Relation index, FmgrInfo *procinfo, Oid collation, int m, int efConstruction, bool existing);
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void HnswFindElementNeighbors(char *base, HnswElement element, HnswElement entryPoint, Relation index, FmgrInfo *procinfo, Oid collation, int m, int efConstruction, bool existing);
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HnswCandidate *HnswEntryCandidate(char *base, HnswElement em, HnswQuery * q, Relation rel, FmgrInfo *procinfo, Oid collation, bool loadVec);
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HnswCandidate *HnswEntryCandidate(char *base, HnswElement em, Datum q, Relation rel, FmgrInfo *procinfo, Oid collation, bool loadVec);
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void HnswUpdateMetaPage(Relation index, int updateEntry, HnswElement entryPoint, BlockNumber insertPage, ForkNumber forkNum, bool building);
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void HnswUpdateMetaPage(Relation index, int updateEntry, HnswElement entryPoint, BlockNumber insertPage, ForkNumber forkNum, bool building);
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void HnswSetNeighborTuple(char *base, HnswNeighborTuple ntup, HnswElement e, int m);
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void HnswSetNeighborTuple(char *base, HnswNeighborTuple ntup, HnswElement e, int m);
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void HnswAddHeapTid(HnswElement element, ItemPointer heaptid);
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void HnswAddHeapTid(HnswElement element, ItemPointer heaptid);
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@@ -390,7 +385,7 @@ void HnswInitNeighbors(char *base, HnswElement element, int m, HnswAllocator *
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bool HnswInsertTupleOnDisk(Relation index, Datum value, Datum *values, bool *isnull, ItemPointer heap_tid, bool building);
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bool HnswInsertTupleOnDisk(Relation index, Datum value, Datum *values, bool *isnull, ItemPointer heap_tid, bool building);
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void HnswUpdateNeighborsOnDisk(Relation index, FmgrInfo *procinfo, Oid collation, HnswElement e, int m, bool checkExisting, bool building);
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void HnswUpdateNeighborsOnDisk(Relation index, FmgrInfo *procinfo, Oid collation, HnswElement e, int m, bool checkExisting, bool building);
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void HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHeaptids, bool loadVec);
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void HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHeaptids, bool loadVec);
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void HnswLoadElement(HnswElement element, float *distance, HnswQuery * q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
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void HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec);
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void HnswSetElementTuple(char *base, HnswElementTuple etup, HnswElement element);
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void HnswSetElementTuple(char *base, HnswElementTuple etup, HnswElement element);
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void HnswUpdateConnection(char *base, HnswElement element, HnswCandidate * hc, int lm, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
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void HnswUpdateConnection(char *base, HnswElement element, HnswCandidate * hc, int lm, int lc, int *updateIdx, Relation index, FmgrInfo *procinfo, Oid collation);
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void HnswLoadNeighbors(HnswElement element, Relation index, int m);
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void HnswLoadNeighbors(HnswElement element, Relation index, int m);
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@@ -669,10 +669,6 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
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buildstate->efConstruction = HnswGetEfConstruction(index);
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buildstate->efConstruction = HnswGetEfConstruction(index);
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buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
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buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
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/* Require column to have dimensions to be indexed */
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if (buildstate->dimensions < 0)
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elog(ERROR, "column does not have dimensions");
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if (buildstate->dimensions > HNSW_MAX_DIM)
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if (buildstate->dimensions > HNSW_MAX_DIM)
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elog(ERROR, "column cannot have more than %d dimensions for hnsw index", HNSW_MAX_DIM);
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elog(ERROR, "column cannot have more than %d dimensions for hnsw index", HNSW_MAX_DIM);
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@@ -11,7 +11,7 @@
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* Algorithm 5 from paper
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* Algorithm 5 from paper
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*/
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*/
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static List *
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static List *
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GetScanItems(IndexScanDesc scan, Datum value)
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GetScanItems(IndexScanDesc scan, Datum q)
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{
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{
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HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
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HnswScanOpaque so = (HnswScanOpaque) scan->opaque;
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Relation index = scan->indexRelation;
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Relation index = scan->indexRelation;
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@@ -22,9 +22,6 @@ GetScanItems(IndexScanDesc scan, Datum value)
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int m;
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int m;
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HnswElement entryPoint;
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HnswElement entryPoint;
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char *base = NULL;
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char *base = NULL;
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HnswQuery q;
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q.value = value;
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/* Get m and entry point */
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/* Get m and entry point */
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HnswGetMetaPageInfo(index, &m, &entryPoint);
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HnswGetMetaPageInfo(index, &m, &entryPoint);
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@@ -32,15 +29,15 @@ GetScanItems(IndexScanDesc scan, Datum value)
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if (entryPoint == NULL)
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if (entryPoint == NULL)
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return NIL;
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return NIL;
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ep = list_make1(HnswEntryCandidate(base, entryPoint, &q, index, procinfo, collation, false));
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ep = list_make1(HnswEntryCandidate(base, entryPoint, q, index, procinfo, collation, false));
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for (int lc = entryPoint->level; lc >= 1; lc--)
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for (int lc = entryPoint->level; lc >= 1; lc--)
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{
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{
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w = HnswSearchLayer(base, &q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
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w = HnswSearchLayer(base, q, ep, 1, lc, index, procinfo, collation, m, false, NULL);
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ep = w;
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ep = w;
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}
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}
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return HnswSearchLayer(base, &q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
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return HnswSearchLayer(base, q, ep, hnsw_ef_search, 0, index, procinfo, collation, m, false, NULL);
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}
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}
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/*
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/*
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@@ -555,7 +555,7 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
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* Load an element and optionally get its distance from q
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* Load an element and optionally get its distance from q
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*/
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*/
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void
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void
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HnswLoadElement(HnswElement element, float *distance, HnswQuery * q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec)
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HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec)
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{
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{
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Buffer buf;
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Buffer buf;
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Page page;
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Page page;
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@@ -575,7 +575,7 @@ HnswLoadElement(HnswElement element, float *distance, HnswQuery * q, Relation in
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/* Calculate distance */
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/* Calculate distance */
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if (distance != NULL)
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if (distance != NULL)
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*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q->value, PointerGetDatum(&etup->data)));
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*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->data)));
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UnlockReleaseBuffer(buf);
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UnlockReleaseBuffer(buf);
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}
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}
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@@ -584,19 +584,19 @@ HnswLoadElement(HnswElement element, float *distance, HnswQuery * q, Relation in
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* Get the distance for a candidate
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* Get the distance for a candidate
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*/
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*/
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static float
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static float
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GetCandidateDistance(char *base, HnswCandidate * hc, HnswQuery * q, FmgrInfo *procinfo, Oid collation)
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GetCandidateDistance(char *base, HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
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{
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{
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HnswElement hce = HnswPtrAccess(base, hc->element);
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HnswElement hce = HnswPtrAccess(base, hc->element);
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Datum value = HnswGetValue(base, hce);
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Datum value = HnswGetValue(base, hce);
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return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q->value, value));
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return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, value));
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}
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}
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/*
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/*
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* Create a candidate for the entry point
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* Create a candidate for the entry point
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*/
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*/
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HnswCandidate *
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HnswCandidate *
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HnswEntryCandidate(char *base, HnswElement entryPoint, HnswQuery * q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec)
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HnswEntryCandidate(char *base, HnswElement entryPoint, Datum q, Relation index, FmgrInfo *procinfo, Oid collation, bool loadVec)
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{
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{
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HnswCandidate *hc = palloc(sizeof(HnswCandidate));
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HnswCandidate *hc = palloc(sizeof(HnswCandidate));
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@@ -604,7 +604,7 @@ HnswEntryCandidate(char *base, HnswElement entryPoint, HnswQuery * q, Relation i
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if (index == NULL)
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if (index == NULL)
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hc->distance = GetCandidateDistance(base, hc, q, procinfo, collation);
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hc->distance = GetCandidateDistance(base, hc, q, procinfo, collation);
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else
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else
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HnswLoadElement(entryPoint, &hc->distance, q, index, procinfo, collation, loadVec);
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HnswLoadElement(entryPoint, &hc->distance, &q, index, procinfo, collation, loadVec);
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return hc;
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return hc;
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}
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}
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@@ -722,7 +722,7 @@ CountElement(char *base, HnswElement skipElement, HnswCandidate * hc)
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* Algorithm 2 from paper
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* Algorithm 2 from paper
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*/
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*/
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List *
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List *
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HnswSearchLayer(char *base, HnswQuery * q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
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HnswSearchLayer(char *base, Datum q, List *ep, int ef, int lc, Relation index, FmgrInfo *procinfo, Oid collation, int m, bool inserting, HnswElement skipElement)
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{
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{
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List *w = NIL;
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List *w = NIL;
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pairingheap *C = pairingheap_allocate(CompareNearestCandidates, NULL);
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pairingheap *C = pairingheap_allocate(CompareNearestCandidates, NULL);
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@@ -806,7 +806,7 @@ HnswSearchLayer(char *base, HnswQuery * q, List *ep, int ef, int lc, Relation in
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if (index == NULL)
|
if (index == NULL)
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eDistance = GetCandidateDistance(base, e, q, procinfo, collation);
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eDistance = GetCandidateDistance(base, e, q, procinfo, collation);
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else
|
else
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HnswLoadElement(eElement, &eDistance, q, index, procinfo, collation, inserting);
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HnswLoadElement(eElement, &eDistance, &q, index, procinfo, collation, inserting);
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Assert(!eElement->deleted);
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Assert(!eElement->deleted);
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@@ -1091,9 +1091,7 @@ HnswUpdateConnection(char *base, HnswElement element, HnswCandidate * hc, int lm
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/* Load elements on insert */
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/* Load elements on insert */
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if (index != NULL)
|
if (index != NULL)
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{
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{
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HnswQuery q;
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Datum q = HnswGetValue(base, hce);
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q.value = HnswGetValue(base, hce);
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for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
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{
|
{
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@@ -1103,7 +1101,7 @@ HnswUpdateConnection(char *base, HnswElement element, HnswCandidate * hc, int lm
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if (HnswPtrIsNull(base, hc3Element->value))
|
if (HnswPtrIsNull(base, hc3Element->value))
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HnswLoadElement(hc3Element, &hc3->distance, &q, index, procinfo, collation, true);
|
HnswLoadElement(hc3Element, &hc3->distance, &q, index, procinfo, collation, true);
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else
|
else
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hc3->distance = GetCandidateDistance(base, hc3, &q, procinfo, collation);
|
hc3->distance = GetCandidateDistance(base, hc3, q, procinfo, collation);
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/* Prune element if being deleted */
|
/* Prune element if being deleted */
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if (hc3Element->heaptidsLength == 0)
|
if (hc3Element->heaptidsLength == 0)
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@@ -1203,11 +1201,9 @@ HnswFindElementNeighbors(char *base, HnswElement element, HnswElement entryPoint
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List *w;
|
List *w;
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int level = element->level;
|
int level = element->level;
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int entryLevel;
|
int entryLevel;
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HnswQuery q;
|
Datum q = HnswGetValue(base, element);
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HnswElement skipElement = existing ? element : NULL;
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HnswElement skipElement = existing ? element : NULL;
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q.value = HnswGetValue(base, element);
|
|
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#if PG_VERSION_NUM >= 130000
|
#if PG_VERSION_NUM >= 130000
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/* Precompute hash */
|
/* Precompute hash */
|
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if (index == NULL)
|
if (index == NULL)
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@@ -1219,13 +1215,13 @@ HnswFindElementNeighbors(char *base, HnswElement element, HnswElement entryPoint
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return;
|
return;
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|
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/* Get entry point and level */
|
/* Get entry point and level */
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ep = list_make1(HnswEntryCandidate(base, entryPoint, &q, index, procinfo, collation, true));
|
ep = list_make1(HnswEntryCandidate(base, entryPoint, q, index, procinfo, collation, true));
|
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entryLevel = entryPoint->level;
|
entryLevel = entryPoint->level;
|
||||||
|
|
||||||
/* 1st phase: greedy search to insert level */
|
/* 1st phase: greedy search to insert level */
|
||||||
for (int lc = entryLevel; lc >= level + 1; lc--)
|
for (int lc = entryLevel; lc >= level + 1; lc--)
|
||||||
{
|
{
|
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w = HnswSearchLayer(base, &q, ep, 1, lc, index, procinfo, collation, m, true, skipElement);
|
w = HnswSearchLayer(base, q, ep, 1, lc, index, procinfo, collation, m, true, skipElement);
|
||||||
ep = w;
|
ep = w;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -1243,7 +1239,7 @@ HnswFindElementNeighbors(char *base, HnswElement element, HnswElement entryPoint
|
|||||||
List *neighbors;
|
List *neighbors;
|
||||||
List *lw;
|
List *lw;
|
||||||
|
|
||||||
w = HnswSearchLayer(base, &q, ep, efConstruction, lc, index, procinfo, collation, m, true, skipElement);
|
w = HnswSearchLayer(base, q, ep, efConstruction, lc, index, procinfo, collation, m, true, skipElement);
|
||||||
|
|
||||||
/* Elements being deleted or skipped can help with search */
|
/* Elements being deleted or skipped can help with search */
|
||||||
/* but should be removed before selecting neighbors */
|
/* but should be removed before selecting neighbors */
|
||||||
|
|||||||
113
test/t/020_hnsw_array.pl
Normal file
113
test/t/020_hnsw_array.pl
Normal file
@@ -0,0 +1,113 @@
|
|||||||
|
use strict;
|
||||||
|
use warnings;
|
||||||
|
use PostgresNode;
|
||||||
|
use TestLib;
|
||||||
|
use Test::More;
|
||||||
|
|
||||||
|
my $node;
|
||||||
|
my @queries = ();
|
||||||
|
my @expected;
|
||||||
|
my $limit = 20;
|
||||||
|
|
||||||
|
sub test_recall
|
||||||
|
{
|
||||||
|
my ($min, $operator) = @_;
|
||||||
|
my $correct = 0;
|
||||||
|
my $total = 0;
|
||||||
|
|
||||||
|
my $explain = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||||
|
));
|
||||||
|
like($explain, qr/Index Scan/);
|
||||||
|
|
||||||
|
for my $i (0 .. $#queries)
|
||||||
|
{
|
||||||
|
my $actual = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||||
|
));
|
||||||
|
my @actual_ids = split("\n", $actual);
|
||||||
|
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||||
|
|
||||||
|
my @expected_ids = split("\n", $expected[$i]);
|
||||||
|
|
||||||
|
foreach (@expected_ids)
|
||||||
|
{
|
||||||
|
if (exists($actual_set{$_}))
|
||||||
|
{
|
||||||
|
$correct++;
|
||||||
|
}
|
||||||
|
$total++;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Initialize node
|
||||||
|
$node = get_new_node('node');
|
||||||
|
$node->init;
|
||||||
|
$node->start;
|
||||||
|
|
||||||
|
# Create table
|
||||||
|
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||||
|
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
|
||||||
|
$node->safe_psql("postgres",
|
||||||
|
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
|
||||||
|
);
|
||||||
|
|
||||||
|
$node->safe_psql("postgres", qq(
|
||||||
|
CREATE FUNCTION float4_l2_distance(float4[], float4[]) RETURNS float8
|
||||||
|
AS 'BEGIN RETURN l2_distance(\$1::vector, \$2::vector); END;'
|
||||||
|
LANGUAGE plpgsql IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
|
||||||
|
AS 'BEGIN RETURN vector_l2_squared_distance(\$1::vector, \$2::vector); END;'
|
||||||
|
LANGUAGE plpgsql IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
|
||||||
|
CREATE OPERATOR <-> (
|
||||||
|
LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = float4_l2_distance,
|
||||||
|
COMMUTATOR = '<->'
|
||||||
|
);
|
||||||
|
|
||||||
|
CREATE OPERATOR CLASS float4_l2_ops
|
||||||
|
FOR TYPE float4[] USING hnsw AS
|
||||||
|
OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
|
||||||
|
FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
|
||||||
|
));
|
||||||
|
|
||||||
|
# Generate queries
|
||||||
|
for (1 .. 20)
|
||||||
|
{
|
||||||
|
my $r1 = rand();
|
||||||
|
my $r2 = rand();
|
||||||
|
my $r3 = rand();
|
||||||
|
push(@queries, "{$r1,$r2,$r3}");
|
||||||
|
}
|
||||||
|
|
||||||
|
# Check each index type
|
||||||
|
my @operators = ("<->");
|
||||||
|
my @opclasses = ("float4_l2_ops");
|
||||||
|
|
||||||
|
for my $i (0 .. $#operators)
|
||||||
|
{
|
||||||
|
my $operator = $operators[$i];
|
||||||
|
my $opclass = $opclasses[$i];
|
||||||
|
|
||||||
|
# Get exact results
|
||||||
|
@expected = ();
|
||||||
|
foreach (@queries)
|
||||||
|
{
|
||||||
|
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
|
||||||
|
push(@expected, $res);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Add index
|
||||||
|
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass);");
|
||||||
|
|
||||||
|
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||||
|
test_recall($min, $operator);
|
||||||
|
}
|
||||||
|
|
||||||
|
done_testing();
|
||||||
Reference in New Issue
Block a user