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23 Commits
hnsw-no-pi
...
hnsw-array
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b164833933 |
2
Makefile
2
Makefile
@@ -3,7 +3,7 @@ EXTVERSION = 0.5.0
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|||||||
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||||||
MODULE_big = vector
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MODULE_big = vector
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||||||
DATA = $(wildcard sql/*--*.sql)
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DATA = $(wildcard sql/*--*.sql)
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OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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OBJS = src/float4.o src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
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HEADERS = src/vector.h
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HEADERS = src/vector.h
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TESTS = $(wildcard test/sql/*.sql)
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TESTS = $(wildcard test/sql/*.sql)
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@@ -1,7 +1,7 @@
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EXTENSION = vector
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EXTENSION = vector
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EXTVERSION = 0.5.0
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EXTVERSION = 0.5.0
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OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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OBJS = src\float4.obj src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
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HEADERS = src\vector.h
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HEADERS = src\vector.h
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged
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@@ -34,6 +34,9 @@ CREATE TYPE vector (
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CREATE FUNCTION l2_distance(vector, vector) RETURNS float8
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CREATE FUNCTION l2_distance(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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CREATE FUNCTION l2_distance(float4[], float4[]) RETURNS float8
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AS 'MODULE_PATHNAME', 'float4_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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||||||
|
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||||||
CREATE FUNCTION inner_product(vector, vector) RETURNS float8
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CREATE FUNCTION inner_product(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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|
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@@ -84,6 +87,9 @@ CREATE FUNCTION vector_cmp(vector, vector) RETURNS int4
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CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8
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CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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|
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CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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||||||
CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8
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CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8
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||||||
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
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AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
|
||||||
|
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||||||
@@ -164,6 +170,11 @@ CREATE OPERATOR <-> (
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COMMUTATOR = '<->'
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COMMUTATOR = '<->'
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);
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);
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|
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||||||
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CREATE OPERATOR <-> (
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LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = l2_distance,
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COMMUTATOR = '<->'
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||||||
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);
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||||||
|
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||||||
CREATE OPERATOR <#> (
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CREATE OPERATOR <#> (
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LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product,
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LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product,
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COMMUTATOR = '<#>'
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COMMUTATOR = '<#>'
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@@ -280,6 +291,11 @@ CREATE OPERATOR CLASS vector_l2_ops
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OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops,
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OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops,
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FUNCTION 1 vector_l2_squared_distance(vector, vector);
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FUNCTION 1 vector_l2_squared_distance(vector, vector);
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CREATE OPERATOR CLASS float4_l2_ops
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FOR TYPE float4[] USING hnsw AS
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OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
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FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
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||||||
|
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||||||
CREATE OPERATOR CLASS vector_ip_ops
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CREATE OPERATOR CLASS vector_ip_ops
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FOR TYPE vector USING hnsw AS
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FOR TYPE vector USING hnsw AS
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OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops,
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OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops,
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||||||
|
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60
src/float4.c
Normal file
60
src/float4.c
Normal file
@@ -0,0 +1,60 @@
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#include "postgres.h"
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||||||
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#include <math.h>
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||||||
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|
||||||
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#include "utils/array.h"
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||||||
|
|
||||||
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/*
|
||||||
|
* Get the L2 distance between vectors
|
||||||
|
*/
|
||||||
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PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_distance);
|
||||||
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Datum
|
||||||
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float4_l2_distance(PG_FUNCTION_ARGS)
|
||||||
|
{
|
||||||
|
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
|
||||||
|
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
|
||||||
|
float *ax = (float *) ARR_DATA_PTR(a);
|
||||||
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float *bx = (float *) ARR_DATA_PTR(b);
|
||||||
|
float distance = 0.0;
|
||||||
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float diff;
|
||||||
|
|
||||||
|
/* TODO Check rank, dimensions, and nulls */
|
||||||
|
int dim = ARR_DIMS(a)[0];
|
||||||
|
|
||||||
|
/* Auto-vectorized */
|
||||||
|
for (int i = 0; i < dim; i++)
|
||||||
|
{
|
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|
diff = ax[i] - bx[i];
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|
distance += diff * diff;
|
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|
}
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|
|
||||||
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PG_RETURN_FLOAT8(sqrt((double) distance));
|
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|
}
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|
|
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|
/*
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* Get the L2 squared distance between vectors
|
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* This saves a sqrt calculation
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|
*/
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PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_squared_distance);
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Datum
|
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float4_l2_squared_distance(PG_FUNCTION_ARGS)
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|
{
|
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|
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
|
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|
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
|
||||||
|
float *ax = (float *) ARR_DATA_PTR(a);
|
||||||
|
float *bx = (float *) ARR_DATA_PTR(b);
|
||||||
|
float distance = 0.0;
|
||||||
|
float diff;
|
||||||
|
|
||||||
|
/* TODO Check rank, dimensions, and nulls */
|
||||||
|
int dim = ARR_DIMS(a)[0];
|
||||||
|
|
||||||
|
/* Auto-vectorized */
|
||||||
|
for (int i = 0; i < dim; i++)
|
||||||
|
{
|
||||||
|
diff = ax[i] - bx[i];
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|
distance += diff * diff;
|
||||||
|
}
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||||||
|
|
||||||
|
PG_RETURN_FLOAT8((double) distance);
|
||||||
|
}
|
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@@ -33,6 +33,12 @@ HnswInit(void)
|
|||||||
HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
|
HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
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||||||
#if PG_VERSION_NUM >= 130000
|
#if PG_VERSION_NUM >= 130000
|
||||||
,AccessExclusiveLock
|
,AccessExclusiveLock
|
||||||
|
#endif
|
||||||
|
);
|
||||||
|
add_int_reloption(hnsw_relopt_kind, "dimensions", "Number of dimensions",
|
||||||
|
HNSW_DEFAULT_DIMENSIONS, HNSW_MIN_DIMENSIONS, HNSW_MAX_DIMENSIONS
|
||||||
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
,AccessExclusiveLock
|
||||||
#endif
|
#endif
|
||||||
);
|
);
|
||||||
|
|
||||||
@@ -125,6 +131,7 @@ hnswoptions(Datum reloptions, bool validate)
|
|||||||
static const relopt_parse_elt tab[] = {
|
static const relopt_parse_elt tab[] = {
|
||||||
{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
|
{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
|
||||||
{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
|
{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
|
||||||
|
{"dimensions", RELOPT_TYPE_INT, offsetof(HnswOptions, dimensions)},
|
||||||
};
|
};
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 130000
|
#if PG_VERSION_NUM >= 130000
|
||||||
|
|||||||
14
src/hnsw.h
14
src/hnsw.h
@@ -42,6 +42,9 @@
|
|||||||
#define HNSW_DEFAULT_EF_SEARCH 40
|
#define HNSW_DEFAULT_EF_SEARCH 40
|
||||||
#define HNSW_MIN_EF_SEARCH 1
|
#define HNSW_MIN_EF_SEARCH 1
|
||||||
#define HNSW_MAX_EF_SEARCH 1000
|
#define HNSW_MAX_EF_SEARCH 1000
|
||||||
|
#define HNSW_DEFAULT_DIMENSIONS -1
|
||||||
|
#define HNSW_MIN_DIMENSIONS 1
|
||||||
|
#define HNSW_MAX_DIMENSIONS HNSW_MAX_DIM
|
||||||
|
|
||||||
/* Tuple types */
|
/* Tuple types */
|
||||||
#define HNSW_ELEMENT_TUPLE_TYPE 1
|
#define HNSW_ELEMENT_TUPLE_TYPE 1
|
||||||
@@ -57,7 +60,7 @@
|
|||||||
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
|
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
|
||||||
#define PROGRESS_HNSW_PHASE_LOAD 2
|
#define PROGRESS_HNSW_PHASE_LOAD 2
|
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|
|
||||||
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim))
|
#define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
|
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#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
|
||||||
|
|
||||||
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
|
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
|
||||||
@@ -96,12 +99,13 @@ typedef struct HnswElementData
|
|||||||
List *heaptids;
|
List *heaptids;
|
||||||
uint8 level;
|
uint8 level;
|
||||||
uint8 deleted;
|
uint8 deleted;
|
||||||
|
bool loaded;
|
||||||
HnswNeighborArray *neighbors;
|
HnswNeighborArray *neighbors;
|
||||||
BlockNumber blkno;
|
BlockNumber blkno;
|
||||||
OffsetNumber offno;
|
OffsetNumber offno;
|
||||||
OffsetNumber neighborOffno;
|
OffsetNumber neighborOffno;
|
||||||
BlockNumber neighborPage;
|
BlockNumber neighborPage;
|
||||||
Vector *vec;
|
Datum value;
|
||||||
} HnswElementData;
|
} HnswElementData;
|
||||||
|
|
||||||
typedef HnswElementData * HnswElement;
|
typedef HnswElementData * HnswElement;
|
||||||
@@ -130,6 +134,7 @@ typedef struct HnswOptions
|
|||||||
int32 vl_len_; /* varlena header (do not touch directly!) */
|
int32 vl_len_; /* varlena header (do not touch directly!) */
|
||||||
int m; /* number of connections */
|
int m; /* number of connections */
|
||||||
int efConstruction; /* size of dynamic candidate list */
|
int efConstruction; /* size of dynamic candidate list */
|
||||||
|
int dimensions;
|
||||||
} HnswOptions;
|
} HnswOptions;
|
||||||
|
|
||||||
typedef struct HnswBuildState
|
typedef struct HnswBuildState
|
||||||
@@ -200,7 +205,7 @@ typedef struct HnswElementTupleData
|
|||||||
ItemPointerData heaptids[HNSW_HEAPTIDS];
|
ItemPointerData heaptids[HNSW_HEAPTIDS];
|
||||||
ItemPointerData neighbortid;
|
ItemPointerData neighbortid;
|
||||||
uint16 unused2;
|
uint16 unused2;
|
||||||
Vector vec;
|
char value[FLEXIBLE_ARRAY_MEMBER];
|
||||||
} HnswElementTupleData;
|
} HnswElementTupleData;
|
||||||
|
|
||||||
typedef HnswElementTupleData * HnswElementTuple;
|
typedef HnswElementTupleData * HnswElementTuple;
|
||||||
@@ -258,7 +263,8 @@ typedef struct HnswVacuumState
|
|||||||
/* Methods */
|
/* Methods */
|
||||||
int HnswGetM(Relation index);
|
int HnswGetM(Relation index);
|
||||||
int HnswGetEfConstruction(Relation index);
|
int HnswGetEfConstruction(Relation index);
|
||||||
FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum);
|
int HnswGetDimensions(Relation index);
|
||||||
|
FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
|
||||||
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
|
||||||
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);
|
||||||
|
|||||||
@@ -8,6 +8,7 @@
|
|||||||
#include "lib/pairingheap.h"
|
#include "lib/pairingheap.h"
|
||||||
#include "nodes/pg_list.h"
|
#include "nodes/pg_list.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
|
#include "utils/datum.h"
|
||||||
#include "utils/memutils.h"
|
#include "utils/memutils.h"
|
||||||
|
|
||||||
#if PG_VERSION_NUM >= 140000
|
#if PG_VERSION_NUM >= 140000
|
||||||
@@ -106,8 +107,6 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
{
|
{
|
||||||
Relation index = buildstate->index;
|
Relation index = buildstate->index;
|
||||||
ForkNumber forkNum = buildstate->forkNum;
|
ForkNumber forkNum = buildstate->forkNum;
|
||||||
int dimensions = buildstate->dimensions;
|
|
||||||
Size etupSize;
|
|
||||||
Size maxSize;
|
Size maxSize;
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
@@ -119,10 +118,9 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
|
||||||
|
|
||||||
/* Allocate once */
|
/* Allocate once */
|
||||||
etup = palloc0(etupSize);
|
etup = palloc0(maxSize);
|
||||||
ntup = palloc0(maxSize);
|
ntup = palloc0(maxSize);
|
||||||
|
|
||||||
/* Prepare first page */
|
/* Prepare first page */
|
||||||
@@ -134,12 +132,14 @@ CreateElementPages(HnswBuildState * buildstate)
|
|||||||
foreach(lc, buildstate->elements)
|
foreach(lc, buildstate->elements)
|
||||||
{
|
{
|
||||||
HnswElement element = lfirst(lc);
|
HnswElement element = lfirst(lc);
|
||||||
|
Size etupSize;
|
||||||
Size ntupSize;
|
Size ntupSize;
|
||||||
Size combinedSize;
|
Size combinedSize;
|
||||||
|
|
||||||
HnswSetElementTuple(etup, element);
|
HnswSetElementTuple(etup, element);
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
|
||||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||||
|
|
||||||
@@ -276,18 +276,15 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
|
|||||||
int m = buildstate->m;
|
int m = buildstate->m;
|
||||||
|
|
||||||
/* Detoast once for all calls */
|
/* Detoast once for all calls */
|
||||||
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Normalize if needed */
|
/* Normalize if needed */
|
||||||
if (buildstate->normprocinfo != NULL)
|
if (buildstate->normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec))
|
if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
|
||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Copy value to element so accessible outside of memory context */
|
|
||||||
memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
|
|
||||||
|
|
||||||
/* Insert element in graph */
|
/* Insert element in graph */
|
||||||
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
|
||||||
|
|
||||||
@@ -363,7 +360,6 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
|
|
||||||
/* Allocate necessary memory outside of memory context */
|
/* Allocate necessary memory outside of memory context */
|
||||||
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
|
||||||
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
|
|
||||||
|
|
||||||
/* Use memory context since detoast can allocate */
|
/* Use memory context since detoast can allocate */
|
||||||
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
|
||||||
@@ -371,9 +367,8 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
/* Insert tuple */
|
/* Insert tuple */
|
||||||
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
inserted = InsertTuple(index, values, element, buildstate, &dup);
|
||||||
|
|
||||||
/* Reset memory context */
|
/* Switch memory context */
|
||||||
MemoryContextSwitchTo(oldCtx);
|
MemoryContextSwitchTo(oldCtx);
|
||||||
MemoryContextReset(buildstate->tmpCtx);
|
|
||||||
|
|
||||||
/* Add outside memory context */
|
/* Add outside memory context */
|
||||||
if (dup != NULL)
|
if (dup != NULL)
|
||||||
@@ -381,9 +376,16 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
|
|||||||
|
|
||||||
/* Add to buildstate or free */
|
/* Add to buildstate or free */
|
||||||
if (inserted)
|
if (inserted)
|
||||||
|
{
|
||||||
|
element->value = datumCopy(element->value, false, -1);
|
||||||
|
element->loaded = true;
|
||||||
buildstate->elements = lappend(buildstate->elements, element);
|
buildstate->elements = lappend(buildstate->elements, element);
|
||||||
|
}
|
||||||
else
|
else
|
||||||
HnswFreeElement(element);
|
HnswFreeElement(element);
|
||||||
|
|
||||||
|
/* Reset memory context */
|
||||||
|
MemoryContextReset(buildstate->tmpCtx);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -398,6 +400,7 @@ HnswGetMaxInMemoryElements(int m, double ml, int dimensions)
|
|||||||
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
|
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
|
||||||
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
|
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
|
||||||
elementSize += sizeof(ItemPointerData);
|
elementSize += sizeof(ItemPointerData);
|
||||||
|
/* TODO Handle non-vector types */
|
||||||
elementSize += VECTOR_SIZE(dimensions);
|
elementSize += VECTOR_SIZE(dimensions);
|
||||||
return (maintenance_work_mem * 1024L) / elementSize;
|
return (maintenance_work_mem * 1024L) / elementSize;
|
||||||
}
|
}
|
||||||
@@ -415,7 +418,10 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
|
|||||||
|
|
||||||
buildstate->m = HnswGetM(index);
|
buildstate->m = HnswGetM(index);
|
||||||
buildstate->efConstruction = HnswGetEfConstruction(index);
|
buildstate->efConstruction = HnswGetEfConstruction(index);
|
||||||
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
buildstate->dimensions = HnswGetDimensions(index);
|
||||||
|
|
||||||
|
if (buildstate->dimensions < 0)
|
||||||
|
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
|
||||||
|
|
||||||
/* Require column to have dimensions to be indexed */
|
/* Require column to have dimensions to be indexed */
|
||||||
if (buildstate->dimensions < 0)
|
if (buildstate->dimensions < 0)
|
||||||
|
|||||||
@@ -123,7 +123,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
Size minCombinedSize;
|
Size minCombinedSize;
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
BlockNumber currentPage = insertPage;
|
BlockNumber currentPage = insertPage;
|
||||||
int dimensions = e->vec->dim;
|
|
||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
Buffer nbuf;
|
Buffer nbuf;
|
||||||
Page npage;
|
Page npage;
|
||||||
@@ -132,7 +131,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
|
|||||||
BlockNumber newInsertPage = InvalidBlockNumber;
|
BlockNumber newInsertPage = InvalidBlockNumber;
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
|
||||||
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
|
||||||
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
|
||||||
@@ -411,7 +410,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim);
|
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
|
||||||
HnswElementTuple etup;
|
HnswElementTuple etup;
|
||||||
int i;
|
int i;
|
||||||
|
|
||||||
@@ -522,7 +521,7 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
|
|||||||
|
|
||||||
/* Create an element */
|
/* Create an element */
|
||||||
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
|
||||||
element->vec = DatumGetVector(value);
|
element->value = value;
|
||||||
|
|
||||||
/* Prevent concurrent inserts when likely updating entry point */
|
/* Prevent concurrent inserts when likely updating entry point */
|
||||||
if (entryPoint == NULL || element->level > entryPoint->level)
|
if (entryPoint == NULL || element->level > entryPoint->level)
|
||||||
|
|||||||
@@ -4,6 +4,7 @@
|
|||||||
|
|
||||||
#include "hnsw.h"
|
#include "hnsw.h"
|
||||||
#include "storage/bufmgr.h"
|
#include "storage/bufmgr.h"
|
||||||
|
#include "utils/datum.h"
|
||||||
#include "vector.h"
|
#include "vector.h"
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -34,16 +35,30 @@ HnswGetEfConstruction(Relation index)
|
|||||||
return HNSW_DEFAULT_EF_CONSTRUCTION;
|
return HNSW_DEFAULT_EF_CONSTRUCTION;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Get the number of dimensions in the index
|
||||||
|
*/
|
||||||
|
int
|
||||||
|
HnswGetDimensions(Relation index)
|
||||||
|
{
|
||||||
|
HnswOptions *opts = (HnswOptions *) index->rd_options;
|
||||||
|
|
||||||
|
if (opts)
|
||||||
|
return opts->dimensions;
|
||||||
|
|
||||||
|
return HNSW_DEFAULT_DIMENSIONS;
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
HnswOptionalProcInfo(Relation rel, uint16 procnum)
|
HnswOptionalProcInfo(Relation index, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(rel, 1, procnum);
|
return index_getprocinfo(index, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -143,6 +158,17 @@ HnswInitNeighbors(HnswElement element, int m)
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Free neighbors
|
||||||
|
*/
|
||||||
|
static void
|
||||||
|
HnswFreeNeighbors(HnswElement element)
|
||||||
|
{
|
||||||
|
for (int lc = 0; lc <= element->level; lc++)
|
||||||
|
pfree(element->neighbors[lc].items);
|
||||||
|
pfree(element->neighbors);
|
||||||
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
* Allocate an element
|
* Allocate an element
|
||||||
*/
|
*/
|
||||||
@@ -174,11 +200,10 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
|
|||||||
void
|
void
|
||||||
HnswFreeElement(HnswElement element)
|
HnswFreeElement(HnswElement element)
|
||||||
{
|
{
|
||||||
|
HnswFreeNeighbors(element);
|
||||||
list_free_deep(element->heaptids);
|
list_free_deep(element->heaptids);
|
||||||
for (int lc = 0; lc <= element->level; lc++)
|
if (element->loaded)
|
||||||
pfree(element->neighbors[lc].items);
|
pfree(DatumGetPointer(element->value));
|
||||||
pfree(element->neighbors);
|
|
||||||
pfree(element->vec);
|
|
||||||
pfree(element);
|
pfree(element);
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -205,7 +230,7 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
|
|||||||
element->blkno = blkno;
|
element->blkno = blkno;
|
||||||
element->offno = offno;
|
element->offno = offno;
|
||||||
element->neighbors = NULL;
|
element->neighbors = NULL;
|
||||||
element->vec = NULL;
|
element->loaded = false;
|
||||||
return element;
|
return element;
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -315,7 +340,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
|
|||||||
else
|
else
|
||||||
ItemPointerSetInvalid(&etup->heaptids[i]);
|
ItemPointerSetInvalid(&etup->heaptids[i]);
|
||||||
}
|
}
|
||||||
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim));
|
memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -438,8 +463,10 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
|
|||||||
|
|
||||||
if (loadVec)
|
if (loadVec)
|
||||||
{
|
{
|
||||||
element->vec = palloc(VECTOR_SIZE(etup->vec.dim));
|
Datum value = PointerGetDatum(&etup->value);
|
||||||
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
|
|
||||||
|
element->value = datumCopy(value, false, -1);
|
||||||
|
element->loaded = true;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -467,7 +494,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
|||||||
|
|
||||||
/* Calculate distance */
|
/* Calculate distance */
|
||||||
if (distance != NULL)
|
if (distance != NULL)
|
||||||
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec)));
|
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
|
||||||
|
|
||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
}
|
}
|
||||||
@@ -478,7 +505,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
|
|||||||
static float
|
static float
|
||||||
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
|
||||||
{
|
{
|
||||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec)));
|
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -713,7 +740,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec)));
|
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
@@ -796,7 +823,7 @@ HnswFindDuplicate(HnswElement e)
|
|||||||
HnswCandidate *neighbor = &neighbors->items[i];
|
HnswCandidate *neighbor = &neighbors->items[i];
|
||||||
|
|
||||||
/* Exit early since ordered by distance */
|
/* Exit early since ordered by distance */
|
||||||
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0)
|
if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
|
||||||
break;
|
break;
|
||||||
|
|
||||||
/* Check for space */
|
/* Check for space */
|
||||||
@@ -871,13 +898,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
|
|||||||
/* Load elements on insert */
|
/* Load elements on insert */
|
||||||
if (index != NULL)
|
if (index != NULL)
|
||||||
{
|
{
|
||||||
Datum q = PointerGetDatum(hc->element->vec);
|
Datum q = hc->element->value;
|
||||||
|
|
||||||
for (int i = 0; i < currentNeighbors->length; i++)
|
for (int i = 0; i < currentNeighbors->length; i++)
|
||||||
{
|
{
|
||||||
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
HnswCandidate *hc3 = ¤tNeighbors->items[i];
|
||||||
|
|
||||||
if (hc3->element->vec == NULL)
|
if (!hc3->element->loaded)
|
||||||
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
|
||||||
else
|
else
|
||||||
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
|
||||||
@@ -959,7 +986,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
|
|||||||
List *w;
|
List *w;
|
||||||
int level = element->level;
|
int level = element->level;
|
||||||
int entryLevel;
|
int entryLevel;
|
||||||
Datum q = PointerGetDatum(element->vec);
|
Datum q = element->value;
|
||||||
HnswElement skipElement = existing ? element : NULL;
|
HnswElement skipElement = existing ? element : NULL;
|
||||||
|
|
||||||
/* No neighbors if no entry point */
|
/* No neighbors if no entry point */
|
||||||
|
|||||||
@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
|
|||||||
|
|
||||||
if (itemUpdated)
|
if (itemUpdated)
|
||||||
{
|
{
|
||||||
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
|
||||||
|
|
||||||
/* Mark rest as invalid */
|
/* Mark rest as invalid */
|
||||||
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
for (int i = idx; i < HNSW_HEAPTIDS; i++)
|
||||||
@@ -485,6 +485,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
HnswNeighborTuple ntup;
|
HnswNeighborTuple ntup;
|
||||||
Size etupSize;
|
Size etupSize;
|
||||||
Size ntupSize;
|
Size ntupSize;
|
||||||
|
Datum value;
|
||||||
Buffer nbuf;
|
Buffer nbuf;
|
||||||
Page npage;
|
Page npage;
|
||||||
BlockNumber neighborPage;
|
BlockNumber neighborPage;
|
||||||
@@ -508,8 +509,11 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
if (ItemPointerIsValid(&etup->heaptids[0]))
|
if (ItemPointerIsValid(&etup->heaptids[0]))
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
|
/* Get datum */
|
||||||
|
value = PointerGetDatum(&etup->value);
|
||||||
|
|
||||||
/* Calculate sizes */
|
/* Calculate sizes */
|
||||||
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim);
|
etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
|
||||||
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
|
||||||
|
|
||||||
/* Get neighbor page */
|
/* Get neighbor page */
|
||||||
@@ -532,7 +536,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
|
|||||||
|
|
||||||
/* Overwrite element */
|
/* Overwrite element */
|
||||||
etup->deleted = 1;
|
etup->deleted = 1;
|
||||||
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float));
|
MemSet(&etup->value, 0, VARSIZE_ANY(value));
|
||||||
|
|
||||||
/* Overwrite neighbors */
|
/* Overwrite neighbors */
|
||||||
for (int i = 0; i < ntup->count; i++)
|
for (int i = 0; i < ntup->count; i++)
|
||||||
|
|||||||
@@ -506,29 +506,30 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
|
|||||||
Buffer buf;
|
Buffer buf;
|
||||||
Page page;
|
Page page;
|
||||||
GenericXLogState *state;
|
GenericXLogState *state;
|
||||||
OffsetNumber offno;
|
|
||||||
Size itemsz;
|
|
||||||
IvfflatList list;
|
IvfflatList list;
|
||||||
|
|
||||||
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions));
|
list = palloc0(BLCKSZ);
|
||||||
list = palloc(itemsz);
|
|
||||||
|
|
||||||
buf = IvfflatNewBuffer(index, forkNum);
|
buf = IvfflatNewBuffer(index, forkNum);
|
||||||
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
IvfflatInitRegisterPage(index, &buf, &page, &state);
|
||||||
|
|
||||||
for (int i = 0; i < lists; i++)
|
for (int i = 0; i < lists; i++)
|
||||||
{
|
{
|
||||||
|
OffsetNumber offno;
|
||||||
|
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
|
||||||
|
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
|
||||||
|
|
||||||
/* Load list */
|
/* Load list */
|
||||||
list->startPage = InvalidBlockNumber;
|
list->startPage = InvalidBlockNumber;
|
||||||
list->insertPage = InvalidBlockNumber;
|
list->insertPage = InvalidBlockNumber;
|
||||||
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions));
|
memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
|
||||||
|
|
||||||
/* Ensure free space */
|
/* Ensure free space */
|
||||||
if (PageGetFreeSpace(page) < itemsz)
|
if (PageGetFreeSpace(page) < listSize)
|
||||||
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
IvfflatAppendPage(index, &buf, &page, &state, forkNum);
|
||||||
|
|
||||||
/* Add the item */
|
/* Add the item */
|
||||||
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false);
|
offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
|
||||||
if (offno == InvalidOffsetNumber)
|
if (offno == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
|
|||||||
@@ -52,7 +52,7 @@
|
|||||||
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
|
||||||
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
#define PROGRESS_IVFFLAT_PHASE_LOAD 4
|
||||||
|
|
||||||
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim))
|
#define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
|
||||||
|
|
||||||
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
|
||||||
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
|
||||||
@@ -229,7 +229,7 @@ typedef struct IvfflatListData
|
|||||||
{
|
{
|
||||||
BlockNumber startPage;
|
BlockNumber startPage;
|
||||||
BlockNumber insertPage;
|
BlockNumber insertPage;
|
||||||
Vector center;
|
char center[FLEXIBLE_ARRAY_MEMBER];
|
||||||
} IvfflatListData;
|
} IvfflatListData;
|
||||||
|
|
||||||
typedef IvfflatListData * IvfflatList;
|
typedef IvfflatListData * IvfflatList;
|
||||||
@@ -277,7 +277,7 @@ VectorArray VectorArrayInit(int maxlen, int dimensions);
|
|||||||
void VectorArrayFree(VectorArray arr);
|
void VectorArrayFree(VectorArray arr);
|
||||||
void PrintVectorArray(char *msg, VectorArray arr);
|
void PrintVectorArray(char *msg, VectorArray arr);
|
||||||
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
|
||||||
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum);
|
FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
|
||||||
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
|
||||||
int IvfflatGetLists(Relation index);
|
int IvfflatGetLists(Relation index);
|
||||||
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);
|
||||||
|
|||||||
@@ -11,36 +11,37 @@
|
|||||||
* Find the list that minimizes the distance function
|
* Find the list that minimizes the distance function
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
|
||||||
{
|
{
|
||||||
Buffer cbuf;
|
|
||||||
Page cpage;
|
|
||||||
IvfflatList list;
|
|
||||||
double distance;
|
|
||||||
double minDistance = DBL_MAX;
|
double minDistance = DBL_MAX;
|
||||||
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
|
||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
OffsetNumber offno;
|
|
||||||
OffsetNumber maxoffno;
|
|
||||||
|
|
||||||
/* Avoid compiler warning */
|
/* Avoid compiler warning */
|
||||||
listInfo->blkno = nextblkno;
|
listInfo->blkno = nextblkno;
|
||||||
listInfo->offno = FirstOffsetNumber;
|
listInfo->offno = FirstOffsetNumber;
|
||||||
|
|
||||||
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC);
|
procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
|
||||||
collation = rel->rd_indcollation[0];
|
collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
/* Search all list pages */
|
/* Search all list pages */
|
||||||
while (BlockNumberIsValid(nextblkno))
|
while (BlockNumberIsValid(nextblkno))
|
||||||
{
|
{
|
||||||
cbuf = ReadBuffer(rel, nextblkno);
|
Buffer cbuf;
|
||||||
|
Page cpage;
|
||||||
|
OffsetNumber maxoffno;
|
||||||
|
|
||||||
|
cbuf = ReadBuffer(index, nextblkno);
|
||||||
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
LockBuffer(cbuf, BUFFER_LOCK_SHARE);
|
||||||
cpage = BufferGetPage(cbuf);
|
cpage = BufferGetPage(cbuf);
|
||||||
maxoffno = PageGetMaxOffsetNumber(cpage);
|
maxoffno = PageGetMaxOffsetNumber(cpage);
|
||||||
|
|
||||||
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
|
||||||
{
|
{
|
||||||
|
IvfflatList list;
|
||||||
|
double distance;
|
||||||
|
|
||||||
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
|
||||||
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
|
||||||
|
|
||||||
@@ -63,7 +64,7 @@ FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo *
|
|||||||
* Insert a tuple into the index
|
* Insert a tuple into the index
|
||||||
*/
|
*/
|
||||||
static void
|
static void
|
||||||
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
|
||||||
{
|
{
|
||||||
IndexTuple itup;
|
IndexTuple itup;
|
||||||
Datum value;
|
Datum value;
|
||||||
@@ -80,20 +81,20 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
|||||||
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
|
||||||
|
|
||||||
/* Normalize if needed */
|
/* Normalize if needed */
|
||||||
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL))
|
if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
|
||||||
return;
|
return;
|
||||||
}
|
}
|
||||||
|
|
||||||
/* Find the insert page - sets the page and list info */
|
/* Find the insert page - sets the page and list info */
|
||||||
FindInsertPage(rel, values, &insertPage, &listInfo);
|
FindInsertPage(index, values, &insertPage, &listInfo);
|
||||||
Assert(BlockNumberIsValid(insertPage));
|
Assert(BlockNumberIsValid(insertPage));
|
||||||
originalInsertPage = insertPage;
|
originalInsertPage = insertPage;
|
||||||
|
|
||||||
/* Form tuple */
|
/* Form tuple */
|
||||||
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull);
|
itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
|
||||||
itup->t_tid = *heap_tid;
|
itup->t_tid = *heap_tid;
|
||||||
|
|
||||||
/* Get tuple size */
|
/* Get tuple size */
|
||||||
@@ -103,10 +104,10 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
|||||||
/* Find a page to insert the item */
|
/* Find a page to insert the item */
|
||||||
for (;;)
|
for (;;)
|
||||||
{
|
{
|
||||||
buf = ReadBuffer(rel, insertPage);
|
buf = ReadBuffer(index, insertPage);
|
||||||
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
|
||||||
|
|
||||||
state = GenericXLogStart(rel);
|
state = GenericXLogStart(index);
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
|
|
||||||
if (PageGetFreeSpace(page) >= itemsz)
|
if (PageGetFreeSpace(page) >= itemsz)
|
||||||
@@ -126,9 +127,9 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
|||||||
Page newpage;
|
Page newpage;
|
||||||
|
|
||||||
/* Add a new page */
|
/* Add a new page */
|
||||||
LockRelationForExtension(rel, ExclusiveLock);
|
LockRelationForExtension(index, ExclusiveLock);
|
||||||
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM);
|
newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
|
||||||
UnlockRelationForExtension(rel, ExclusiveLock);
|
UnlockRelationForExtension(index, ExclusiveLock);
|
||||||
|
|
||||||
/* Init new page */
|
/* Init new page */
|
||||||
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
|
||||||
@@ -149,7 +150,7 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
|||||||
UnlockReleaseBuffer(buf);
|
UnlockReleaseBuffer(buf);
|
||||||
|
|
||||||
/* Prepare new buffer */
|
/* Prepare new buffer */
|
||||||
state = GenericXLogStart(rel);
|
state = GenericXLogStart(index);
|
||||||
buf = newbuf;
|
buf = newbuf;
|
||||||
page = GenericXLogRegisterBuffer(state, buf, 0);
|
page = GenericXLogRegisterBuffer(state, buf, 0);
|
||||||
break;
|
break;
|
||||||
@@ -158,13 +159,13 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
|
|||||||
|
|
||||||
/* Add to next offset */
|
/* Add to next offset */
|
||||||
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
|
||||||
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel));
|
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
|
||||||
|
|
||||||
IvfflatCommitBuffer(buf, state);
|
IvfflatCommitBuffer(buf, state);
|
||||||
|
|
||||||
/* Update the insert page */
|
/* Update the insert page */
|
||||||
if (insertPage != originalInsertPage)
|
if (insertPage != originalInsertPage)
|
||||||
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
|
|||||||
@@ -17,10 +17,6 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
FmgrInfo *procinfo;
|
FmgrInfo *procinfo;
|
||||||
Oid collation;
|
Oid collation;
|
||||||
int64 j;
|
int64 j;
|
||||||
double distance;
|
|
||||||
double sum;
|
|
||||||
double choice;
|
|
||||||
Vector *vec;
|
|
||||||
float *weight = palloc(samples->length * sizeof(float));
|
float *weight = palloc(samples->length * sizeof(float));
|
||||||
int numCenters = centers->maxlen;
|
int numCenters = centers->maxlen;
|
||||||
int numSamples = samples->length;
|
int numSamples = samples->length;
|
||||||
@@ -33,17 +29,21 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
|
|||||||
centers->length++;
|
centers->length++;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
weight[j] = DBL_MAX;
|
weight[j] = FLT_MAX;
|
||||||
|
|
||||||
for (int i = 0; i < numCenters; i++)
|
for (int i = 0; i < numCenters; i++)
|
||||||
{
|
{
|
||||||
|
double sum;
|
||||||
|
double choice;
|
||||||
|
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
sum = 0.0;
|
sum = 0.0;
|
||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
vec = VectorArrayGet(samples, j);
|
Vector *vec = VectorArrayGet(samples, j);
|
||||||
|
double distance;
|
||||||
|
|
||||||
/* Only need to compute distance for new center */
|
/* Only need to compute distance for new center */
|
||||||
/* TODO Use triangle inequality to reduce distance calculations */
|
/* TODO Use triangle inequality to reduce distance calculations */
|
||||||
@@ -112,7 +112,6 @@ CompareVectors(const void *a, const void *b)
|
|||||||
static void
|
static void
|
||||||
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
||||||
{
|
{
|
||||||
Vector *vec;
|
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
Oid collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
|
||||||
@@ -123,7 +122,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
|
||||||
for (int i = 0; i < samples->length; i++)
|
for (int i = 0; i < samples->length; i++)
|
||||||
{
|
{
|
||||||
vec = VectorArrayGet(samples, i);
|
Vector *vec = VectorArrayGet(samples, i);
|
||||||
|
|
||||||
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
|
||||||
{
|
{
|
||||||
@@ -136,7 +135,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Fill remaining with random data */
|
/* Fill remaining with random data */
|
||||||
while (centers->length < centers->maxlen)
|
while (centers->length < centers->maxlen)
|
||||||
{
|
{
|
||||||
vec = VectorArrayGet(centers, centers->length);
|
Vector *vec = VectorArrayGet(centers, centers->length);
|
||||||
|
|
||||||
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
|
||||||
vec->dim = dimensions;
|
vec->dim = dimensions;
|
||||||
@@ -168,7 +167,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
Oid collation;
|
Oid collation;
|
||||||
Vector *vec;
|
Vector *vec;
|
||||||
Vector *newCenter;
|
Vector *newCenter;
|
||||||
int iteration;
|
|
||||||
int64 j;
|
int64 j;
|
||||||
int64 k;
|
int64 k;
|
||||||
int dimensions = centers->dim;
|
int dimensions = centers->dim;
|
||||||
@@ -182,14 +180,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
float *s;
|
float *s;
|
||||||
float *halfcdist;
|
float *halfcdist;
|
||||||
float *newcdist;
|
float *newcdist;
|
||||||
int changes;
|
|
||||||
double minDistance;
|
|
||||||
int closestCenter;
|
|
||||||
double distance;
|
|
||||||
bool rj;
|
|
||||||
bool rjreset;
|
|
||||||
double dxcx;
|
|
||||||
double dxc;
|
|
||||||
|
|
||||||
/* Calculate allocation sizes */
|
/* Calculate allocation sizes */
|
||||||
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
|
||||||
@@ -247,14 +237,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
minDistance = DBL_MAX;
|
float minDistance = FLT_MAX;
|
||||||
closestCenter = 0;
|
int closestCenter = 0;
|
||||||
|
|
||||||
/* Find closest center */
|
/* Find closest center */
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
/* TODO Use Lemma 1 in k-means++ initialization */
|
/* TODO Use Lemma 1 in k-means++ initialization */
|
||||||
distance = lowerBound[j * numCenters + k];
|
float distance = lowerBound[j * numCenters + k];
|
||||||
|
|
||||||
if (distance < minDistance)
|
if (distance < minDistance)
|
||||||
{
|
{
|
||||||
@@ -268,13 +258,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
}
|
}
|
||||||
|
|
||||||
/* Give 500 iterations to converge */
|
/* Give 500 iterations to converge */
|
||||||
for (iteration = 0; iteration < 500; iteration++)
|
for (int iteration = 0; iteration < 500; iteration++)
|
||||||
{
|
{
|
||||||
|
int changes = 0;
|
||||||
|
bool rjreset;
|
||||||
|
|
||||||
/* Can take a while, so ensure we can interrupt */
|
/* Can take a while, so ensure we can interrupt */
|
||||||
CHECK_FOR_INTERRUPTS();
|
CHECK_FOR_INTERRUPTS();
|
||||||
|
|
||||||
changes = 0;
|
|
||||||
|
|
||||||
/* Step 1: For all centers, compute distance */
|
/* Step 1: For all centers, compute distance */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
@@ -282,7 +273,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = j + 1; k < numCenters; k++)
|
for (k = j + 1; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
halfcdist[j * numCenters + k] = distance;
|
halfcdist[j * numCenters + k] = distance;
|
||||||
halfcdist[k * numCenters + j] = distance;
|
halfcdist[k * numCenters + j] = distance;
|
||||||
}
|
}
|
||||||
@@ -291,10 +283,12 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* For all centers c, compute s(c) */
|
/* For all centers c, compute s(c) */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
{
|
{
|
||||||
minDistance = DBL_MAX;
|
float minDistance = FLT_MAX;
|
||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
|
float distance;
|
||||||
|
|
||||||
if (j == k)
|
if (j == k)
|
||||||
continue;
|
continue;
|
||||||
|
|
||||||
@@ -310,6 +304,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
|
bool rj;
|
||||||
|
|
||||||
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */
|
||||||
if (upperBound[j] <= s[closestCenters[j]])
|
if (upperBound[j] <= s[closestCenters[j]])
|
||||||
continue;
|
continue;
|
||||||
@@ -318,6 +314,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
|
float dxcx;
|
||||||
|
|
||||||
/* Step 3: For all remaining points x and centers c */
|
/* Step 3: For all remaining points x and centers c */
|
||||||
if (k == closestCenters[j])
|
if (k == closestCenters[j])
|
||||||
continue;
|
continue;
|
||||||
@@ -347,7 +345,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
/* Step 3b */
|
/* Step 3b */
|
||||||
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
|
||||||
{
|
{
|
||||||
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
|
||||||
|
|
||||||
/* d(x,c) calculated */
|
/* d(x,c) calculated */
|
||||||
lowerBound[j * numCenters + k] = dxc;
|
lowerBound[j * numCenters + k] = dxc;
|
||||||
@@ -361,7 +359,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
changes++;
|
changes++;
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
@@ -378,6 +375,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
for (j = 0; j < numSamples; j++)
|
for (j = 0; j < numSamples; j++)
|
||||||
{
|
{
|
||||||
|
int closestCenter;
|
||||||
|
|
||||||
vec = VectorArrayGet(samples, j);
|
vec = VectorArrayGet(samples, j);
|
||||||
closestCenter = closestCenters[j];
|
closestCenter = closestCenters[j];
|
||||||
|
|
||||||
@@ -426,7 +425,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
{
|
{
|
||||||
for (k = 0; k < numCenters; k++)
|
for (k = 0; k < numCenters; k++)
|
||||||
{
|
{
|
||||||
distance = lowerBound[j * numCenters + k] - newcdist[k];
|
float distance = lowerBound[j * numCenters + k] - newcdist[k];
|
||||||
|
|
||||||
if (distance < 0)
|
if (distance < 0)
|
||||||
distance = 0;
|
distance = 0;
|
||||||
@@ -442,7 +441,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
|
|||||||
|
|
||||||
/* Step 7 */
|
/* Step 7 */
|
||||||
for (j = 0; j < numCenters; j++)
|
for (j = 0; j < numCenters; j++)
|
||||||
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions));
|
VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
|
||||||
|
|
||||||
if (changes == 0 && iteration != 0)
|
if (changes == 0 && iteration != 0)
|
||||||
break;
|
break;
|
||||||
@@ -465,9 +464,6 @@ static void
|
|||||||
CheckCenters(Relation index, VectorArray centers)
|
CheckCenters(Relation index, VectorArray centers)
|
||||||
{
|
{
|
||||||
FmgrInfo *normprocinfo;
|
FmgrInfo *normprocinfo;
|
||||||
Oid collation;
|
|
||||||
Vector *vec;
|
|
||||||
double norm;
|
|
||||||
|
|
||||||
if (centers->length != centers->maxlen)
|
if (centers->length != centers->maxlen)
|
||||||
elog(ERROR, "Not enough centers. Please report a bug.");
|
elog(ERROR, "Not enough centers. Please report a bug.");
|
||||||
@@ -475,7 +471,7 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
/* Ensure no NaN or infinite values */
|
/* Ensure no NaN or infinite values */
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
vec = VectorArrayGet(centers, i);
|
Vector *vec = VectorArrayGet(centers, i);
|
||||||
|
|
||||||
for (int j = 0; j < vec->dim; j++)
|
for (int j = 0; j < vec->dim; j++)
|
||||||
{
|
{
|
||||||
@@ -501,11 +497,12 @@ CheckCenters(Relation index, VectorArray centers)
|
|||||||
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
|
||||||
if (normprocinfo != NULL)
|
if (normprocinfo != NULL)
|
||||||
{
|
{
|
||||||
collation = index->rd_indcollation[0];
|
Oid collation = index->rd_indcollation[0];
|
||||||
|
|
||||||
for (int i = 0; i < centers->length; i++)
|
for (int i = 0; i < centers->length; i++)
|
||||||
{
|
{
|
||||||
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
|
||||||
|
|
||||||
if (norm == 0)
|
if (norm == 0)
|
||||||
elog(ERROR, "Zero norm detected. Please report a bug.");
|
elog(ERROR, "Zero norm detected. Please report a bug.");
|
||||||
}
|
}
|
||||||
|
|||||||
@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
|
|||||||
* Get proc
|
* Get proc
|
||||||
*/
|
*/
|
||||||
FmgrInfo *
|
FmgrInfo *
|
||||||
IvfflatOptionalProcInfo(Relation rel, uint16 procnum)
|
IvfflatOptionalProcInfo(Relation index, uint16 procnum)
|
||||||
{
|
{
|
||||||
if (!OidIsValid(index_getprocid(rel, 1, procnum)))
|
if (!OidIsValid(index_getprocid(index, 1, procnum)))
|
||||||
return NULL;
|
return NULL;
|
||||||
|
|
||||||
return index_getprocinfo(rel, 1, procnum);
|
return index_getprocinfo(index, 1, procnum);
|
||||||
}
|
}
|
||||||
|
|
||||||
/*
|
/*
|
||||||
|
|||||||
@@ -54,21 +54,21 @@ SELECT vector_norm('[3e37,4e37]')::real;
|
|||||||
5e+37
|
5e+37
|
||||||
(1 row)
|
(1 row)
|
||||||
|
|
||||||
SELECT l2_distance('[0,0]', '[3,4]');
|
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||||
l2_distance
|
l2_distance
|
||||||
-------------
|
-------------
|
||||||
5
|
5
|
||||||
(1 row)
|
(1 row)
|
||||||
|
|
||||||
SELECT l2_distance('[0,0]', '[0,1]');
|
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||||
l2_distance
|
l2_distance
|
||||||
-------------
|
-------------
|
||||||
1
|
1
|
||||||
(1 row)
|
(1 row)
|
||||||
|
|
||||||
SELECT l2_distance('[1,2]', '[3]');
|
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||||
ERROR: different vector dimensions 2 and 1
|
ERROR: different vector dimensions 2 and 1
|
||||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||||
l2_distance
|
l2_distance
|
||||||
-------------
|
-------------
|
||||||
Infinity
|
Infinity
|
||||||
|
|||||||
@@ -13,10 +13,10 @@ SELECT vector_norm('[3,4]');
|
|||||||
SELECT vector_norm('[0,1]');
|
SELECT vector_norm('[0,1]');
|
||||||
SELECT vector_norm('[3e37,4e37]')::real;
|
SELECT vector_norm('[3e37,4e37]')::real;
|
||||||
|
|
||||||
SELECT l2_distance('[0,0]', '[3,4]');
|
SELECT l2_distance('[0,0]'::vector, '[3,4]');
|
||||||
SELECT l2_distance('[0,0]', '[0,1]');
|
SELECT l2_distance('[0,0]'::vector, '[0,1]');
|
||||||
SELECT l2_distance('[1,2]', '[3]');
|
SELECT l2_distance('[1,2]'::vector, '[3]');
|
||||||
SELECT l2_distance('[3e38]', '[-3e38]');
|
SELECT l2_distance('[3e38]'::vector, '[-3e38]');
|
||||||
|
|
||||||
SELECT inner_product('[1,2]', '[3,4]');
|
SELECT inner_product('[1,2]', '[3,4]');
|
||||||
SELECT inner_product('[1,2]', '[3]');
|
SELECT inner_product('[1,2]', '[3]');
|
||||||
|
|||||||
93
test/t/019_hnsw_array.pl
Normal file
93
test/t/019_hnsw_array.pl
Normal file
@@ -0,0 +1,93 @@
|
|||||||
|
use strict;
|
||||||
|
use warnings;
|
||||||
|
use PostgresNode;
|
||||||
|
use TestLib;
|
||||||
|
use Test::More;
|
||||||
|
|
||||||
|
my $node;
|
||||||
|
my @queries = ();
|
||||||
|
my @expected;
|
||||||
|
my $limit = 20;
|
||||||
|
|
||||||
|
sub test_recall
|
||||||
|
{
|
||||||
|
my ($min, $operator) = @_;
|
||||||
|
my $correct = 0;
|
||||||
|
my $total = 0;
|
||||||
|
|
||||||
|
my $explain = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
|
||||||
|
));
|
||||||
|
like($explain, qr/Index Scan/);
|
||||||
|
|
||||||
|
for my $i (0 .. $#queries)
|
||||||
|
{
|
||||||
|
my $actual = $node->safe_psql("postgres", qq(
|
||||||
|
SET enable_seqscan = off;
|
||||||
|
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
|
||||||
|
));
|
||||||
|
my @actual_ids = split("\n", $actual);
|
||||||
|
my %actual_set = map { $_ => 1 } @actual_ids;
|
||||||
|
|
||||||
|
my @expected_ids = split("\n", $expected[$i]);
|
||||||
|
|
||||||
|
foreach (@expected_ids)
|
||||||
|
{
|
||||||
|
if (exists($actual_set{$_}))
|
||||||
|
{
|
||||||
|
$correct++;
|
||||||
|
}
|
||||||
|
$total++;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
cmp_ok($correct / $total, ">=", $min, $operator);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Initialize node
|
||||||
|
$node = get_new_node('node');
|
||||||
|
$node->init;
|
||||||
|
$node->start;
|
||||||
|
|
||||||
|
# Create table
|
||||||
|
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
|
||||||
|
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
|
||||||
|
$node->safe_psql("postgres",
|
||||||
|
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
|
||||||
|
);
|
||||||
|
|
||||||
|
# Generate queries
|
||||||
|
for (1 .. 20)
|
||||||
|
{
|
||||||
|
my $r1 = rand();
|
||||||
|
my $r2 = rand();
|
||||||
|
my $r3 = rand();
|
||||||
|
push(@queries, "{$r1,$r2,$r3}");
|
||||||
|
}
|
||||||
|
|
||||||
|
# Check each index type
|
||||||
|
my @operators = ("<->");
|
||||||
|
my @opclasses = ("float4_l2_ops");
|
||||||
|
|
||||||
|
for my $i (0 .. $#operators)
|
||||||
|
{
|
||||||
|
my $operator = $operators[$i];
|
||||||
|
my $opclass = $opclasses[$i];
|
||||||
|
|
||||||
|
# Get exact results
|
||||||
|
@expected = ();
|
||||||
|
foreach (@queries)
|
||||||
|
{
|
||||||
|
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
|
||||||
|
push(@expected, $res);
|
||||||
|
}
|
||||||
|
|
||||||
|
# Add index
|
||||||
|
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass) WITH (dimensions = 3);");
|
||||||
|
|
||||||
|
my $min = $operator eq "<#>" ? 0.80 : 0.99;
|
||||||
|
test_recall($min, $operator);
|
||||||
|
}
|
||||||
|
|
||||||
|
done_testing();
|
||||||
Reference in New Issue
Block a user