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23 Commits

Author SHA1 Message Date
Andrew Kane
48b0256931 Updated function name 2023-09-13 20:44:04 -07:00
Andrew Kane
74a830eb56 Fixed CI 2023-09-13 13:45:01 -07:00
Andrew Kane
72e9cf06c1 Added basic support for float4 arrays 2023-09-13 13:41:06 -07:00
Andrew Kane
310a880186 Use copy [skip ci] 2023-09-12 23:03:59 -07:00
Andrew Kane
3c2a3db8b2 Free datum [skip ci] 2023-09-12 23:01:23 -07:00
Andrew Kane
d57a34b25c Use datum for HNSW 2023-09-12 22:18:19 -07:00
Andrew Kane
9ac825d14e Use datum for lists 2023-09-12 21:13:52 -07:00
Andrew Kane
9672446a4c Updated order [skip ci] 2023-09-12 19:53:12 -07:00
Andrew Kane
334614b7f7 Added HnswFreeNeighbors function [skip ci] 2023-09-12 19:49:31 -07:00
Andrew Kane
643eacd9dc Improved variable name [skip ci] 2023-09-12 19:37:42 -07:00
Andrew Kane
bca50a03fa Use consistent variable name 2023-09-12 19:24:31 -07:00
Andrew Kane
d87833cacc Improved variable scoping [skip ci] 2023-09-12 19:16:55 -07:00
Andrew Kane
4c01073ac1 Improved variable scoping [skip ci] 2023-09-12 18:43:43 -07:00
Andrew Kane
6fed8f1e78 Improved types and scoping for k-means [skip ci] 2023-09-12 18:37:56 -07:00
Andrew Kane
611f5b1047 Improved variable scoping [skip ci] 2023-09-12 18:35:53 -07:00
Andrew Kane
e367155732 Improved types and scoping for k-means 2023-09-12 18:33:31 -07:00
Andrew Kane
466c556b1a Improved variable scoping [skip ci] 2023-09-12 18:24:46 -07:00
Andrew Kane
75e09265d6 Improved variable scoping [skip ci] 2023-09-12 18:14:20 -07:00
Andrew Kane
77c5070fb6 Improved variable scoping [skip ci] 2023-09-12 16:50:51 -07:00
Andrew Kane
1006fdf3f2 Improved variable scoping [skip ci] 2023-09-12 16:44:09 -07:00
Andrew Kane
4209c9b3af Improved variable scoping 2023-09-12 16:13:10 -07:00
Andrew Kane
ec0bb4e4ff Improved code 2023-09-12 15:43:28 -07:00
Andrew Kane
b164833933 Removed pinning for HNSW index scan 2023-09-11 12:12:28 -07:00
18 changed files with 342 additions and 125 deletions

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@@ -3,7 +3,7 @@ EXTVERSION = 0.5.0
MODULE_big = vector MODULE_big = vector
DATA = $(wildcard sql/*--*.sql) DATA = $(wildcard sql/*--*.sql)
OBJS = src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o OBJS = src/float4.o src/hnsw.o src/hnswbuild.o src/hnswinsert.o src/hnswscan.o src/hnswutils.o src/hnswvacuum.o src/ivfbuild.o src/ivfflat.o src/ivfinsert.o src/ivfkmeans.o src/ivfscan.o src/ivfutils.o src/ivfvacuum.o src/vector.o
HEADERS = src/vector.h HEADERS = src/vector.h
TESTS = $(wildcard test/sql/*.sql) TESTS = $(wildcard test/sql/*.sql)

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@@ -1,7 +1,7 @@
EXTENSION = vector EXTENSION = vector
EXTVERSION = 0.5.0 EXTVERSION = 0.5.0
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj OBJS = src\float4.obj src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
HEADERS = src\vector.h HEADERS = src\vector.h
REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged REGRESS = btree cast copy functions input ivfflat_cosine ivfflat_ip ivfflat_l2 ivfflat_options ivfflat_unlogged

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@@ -34,6 +34,9 @@ CREATE TYPE vector (
CREATE FUNCTION l2_distance(vector, vector) RETURNS float8 CREATE FUNCTION l2_distance(vector, vector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE; AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION l2_distance(float4[], float4[]) RETURNS float8
AS 'MODULE_PATHNAME', 'float4_l2_distance' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION inner_product(vector, vector) RETURNS float8 CREATE FUNCTION inner_product(vector, vector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE; AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
@@ -84,6 +87,9 @@ CREATE FUNCTION vector_cmp(vector, vector) RETURNS int4
CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8 CREATE FUNCTION vector_l2_squared_distance(vector, vector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE; AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION float4_l2_squared_distance(float4[], float4[]) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8 CREATE FUNCTION vector_negative_inner_product(vector, vector) RETURNS float8
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE; AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
@@ -164,6 +170,11 @@ CREATE OPERATOR <-> (
COMMUTATOR = '<->' COMMUTATOR = '<->'
); );
CREATE OPERATOR <-> (
LEFTARG = float4[], RIGHTARG = float4[], PROCEDURE = l2_distance,
COMMUTATOR = '<->'
);
CREATE OPERATOR <#> ( CREATE OPERATOR <#> (
LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product, LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_negative_inner_product,
COMMUTATOR = '<#>' COMMUTATOR = '<#>'
@@ -280,6 +291,11 @@ CREATE OPERATOR CLASS vector_l2_ops
OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops, OPERATOR 1 <-> (vector, vector) FOR ORDER BY float_ops,
FUNCTION 1 vector_l2_squared_distance(vector, vector); FUNCTION 1 vector_l2_squared_distance(vector, vector);
CREATE OPERATOR CLASS float4_l2_ops
FOR TYPE float4[] USING hnsw AS
OPERATOR 1 <-> (float4[], float4[]) FOR ORDER BY float_ops,
FUNCTION 1 float4_l2_squared_distance(float4[], float4[]);
CREATE OPERATOR CLASS vector_ip_ops CREATE OPERATOR CLASS vector_ip_ops
FOR TYPE vector USING hnsw AS FOR TYPE vector USING hnsw AS
OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops, OPERATOR 1 <#> (vector, vector) FOR ORDER BY float_ops,

60
src/float4.c Normal file
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@@ -0,0 +1,60 @@
#include "postgres.h"
#include <math.h>
#include "utils/array.h"
/*
* Get the L2 distance between vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_distance);
Datum
float4_l2_distance(PG_FUNCTION_ARGS)
{
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
float *ax = (float *) ARR_DATA_PTR(a);
float *bx = (float *) ARR_DATA_PTR(b);
float distance = 0.0;
float diff;
/* TODO Check rank, dimensions, and nulls */
int dim = ARR_DIMS(a)[0];
/* Auto-vectorized */
for (int i = 0; i < dim; i++)
{
diff = ax[i] - bx[i];
distance += diff * diff;
}
PG_RETURN_FLOAT8(sqrt((double) distance));
}
/*
* Get the L2 squared distance between vectors
* This saves a sqrt calculation
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(float4_l2_squared_distance);
Datum
float4_l2_squared_distance(PG_FUNCTION_ARGS)
{
ArrayType *a = PG_GETARG_ARRAYTYPE_P(0);
ArrayType *b = PG_GETARG_ARRAYTYPE_P(1);
float *ax = (float *) ARR_DATA_PTR(a);
float *bx = (float *) ARR_DATA_PTR(b);
float distance = 0.0;
float diff;
/* TODO Check rank, dimensions, and nulls */
int dim = ARR_DIMS(a)[0];
/* Auto-vectorized */
for (int i = 0; i < dim; i++)
{
diff = ax[i] - bx[i];
distance += diff * diff;
}
PG_RETURN_FLOAT8((double) distance);
}

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@@ -33,6 +33,12 @@ HnswInit(void)
HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION HNSW_DEFAULT_EF_CONSTRUCTION, HNSW_MIN_EF_CONSTRUCTION, HNSW_MAX_EF_CONSTRUCTION
#if PG_VERSION_NUM >= 130000 #if PG_VERSION_NUM >= 130000
,AccessExclusiveLock ,AccessExclusiveLock
#endif
);
add_int_reloption(hnsw_relopt_kind, "dimensions", "Number of dimensions",
HNSW_DEFAULT_DIMENSIONS, HNSW_MIN_DIMENSIONS, HNSW_MAX_DIMENSIONS
#if PG_VERSION_NUM >= 130000
,AccessExclusiveLock
#endif #endif
); );
@@ -125,6 +131,7 @@ hnswoptions(Datum reloptions, bool validate)
static const relopt_parse_elt tab[] = { static const relopt_parse_elt tab[] = {
{"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)}, {"m", RELOPT_TYPE_INT, offsetof(HnswOptions, m)},
{"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)}, {"ef_construction", RELOPT_TYPE_INT, offsetof(HnswOptions, efConstruction)},
{"dimensions", RELOPT_TYPE_INT, offsetof(HnswOptions, dimensions)},
}; };
#if PG_VERSION_NUM >= 130000 #if PG_VERSION_NUM >= 130000

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@@ -42,6 +42,9 @@
#define HNSW_DEFAULT_EF_SEARCH 40 #define HNSW_DEFAULT_EF_SEARCH 40
#define HNSW_MIN_EF_SEARCH 1 #define HNSW_MIN_EF_SEARCH 1
#define HNSW_MAX_EF_SEARCH 1000 #define HNSW_MAX_EF_SEARCH 1000
#define HNSW_DEFAULT_DIMENSIONS -1
#define HNSW_MIN_DIMENSIONS 1
#define HNSW_MAX_DIMENSIONS HNSW_MAX_DIM
/* Tuple types */ /* Tuple types */
#define HNSW_ELEMENT_TUPLE_TYPE 1 #define HNSW_ELEMENT_TUPLE_TYPE 1
@@ -57,7 +60,7 @@
/* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */ /* PROGRESS_CREATEIDX_SUBPHASE_INITIALIZE is 1 */
#define PROGRESS_HNSW_PHASE_LOAD 2 #define PROGRESS_HNSW_PHASE_LOAD 2
#define HNSW_ELEMENT_TUPLE_SIZE(_dim) MAXALIGN(offsetof(HnswElementTupleData, vec) + VECTOR_SIZE(_dim)) #define HNSW_ELEMENT_TUPLE_SIZE(_datum) MAXALIGN(offsetof(HnswElementTupleData, value) + VARSIZE_ANY(_datum))
#define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData)) #define HNSW_NEIGHBOR_TUPLE_SIZE(level, m) MAXALIGN(offsetof(HnswNeighborTupleData, indextids) + ((level) + 2) * (m) * sizeof(ItemPointerData))
#define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page)) #define HnswPageGetOpaque(page) ((HnswPageOpaque) PageGetSpecialPointer(page))
@@ -96,12 +99,13 @@ typedef struct HnswElementData
List *heaptids; List *heaptids;
uint8 level; uint8 level;
uint8 deleted; uint8 deleted;
bool loaded;
HnswNeighborArray *neighbors; HnswNeighborArray *neighbors;
BlockNumber blkno; BlockNumber blkno;
OffsetNumber offno; OffsetNumber offno;
OffsetNumber neighborOffno; OffsetNumber neighborOffno;
BlockNumber neighborPage; BlockNumber neighborPage;
Vector *vec; Datum value;
} HnswElementData; } HnswElementData;
typedef HnswElementData * HnswElement; typedef HnswElementData * HnswElement;
@@ -130,6 +134,7 @@ typedef struct HnswOptions
int32 vl_len_; /* varlena header (do not touch directly!) */ int32 vl_len_; /* varlena header (do not touch directly!) */
int m; /* number of connections */ int m; /* number of connections */
int efConstruction; /* size of dynamic candidate list */ int efConstruction; /* size of dynamic candidate list */
int dimensions;
} HnswOptions; } HnswOptions;
typedef struct HnswBuildState typedef struct HnswBuildState
@@ -200,7 +205,7 @@ typedef struct HnswElementTupleData
ItemPointerData heaptids[HNSW_HEAPTIDS]; ItemPointerData heaptids[HNSW_HEAPTIDS];
ItemPointerData neighbortid; ItemPointerData neighbortid;
uint16 unused2; uint16 unused2;
Vector vec; char value[FLEXIBLE_ARRAY_MEMBER];
} HnswElementTupleData; } HnswElementTupleData;
typedef HnswElementTupleData * HnswElementTuple; typedef HnswElementTupleData * HnswElementTuple;
@@ -258,7 +263,8 @@ typedef struct HnswVacuumState
/* Methods */ /* Methods */
int HnswGetM(Relation index); int HnswGetM(Relation index);
int HnswGetEfConstruction(Relation index); int HnswGetEfConstruction(Relation index);
FmgrInfo *HnswOptionalProcInfo(Relation rel, uint16 procnum); int HnswGetDimensions(Relation index);
FmgrInfo *HnswOptionalProcInfo(Relation index, uint16 procnum);
bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result); bool HnswNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
void HnswCommitBuffer(Buffer buf, GenericXLogState *state); void HnswCommitBuffer(Buffer buf, GenericXLogState *state);
Buffer HnswNewBuffer(Relation index, ForkNumber forkNum); Buffer HnswNewBuffer(Relation index, ForkNumber forkNum);

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@@ -8,6 +8,7 @@
#include "lib/pairingheap.h" #include "lib/pairingheap.h"
#include "nodes/pg_list.h" #include "nodes/pg_list.h"
#include "storage/bufmgr.h" #include "storage/bufmgr.h"
#include "utils/datum.h"
#include "utils/memutils.h" #include "utils/memutils.h"
#if PG_VERSION_NUM >= 140000 #if PG_VERSION_NUM >= 140000
@@ -106,8 +107,6 @@ CreateElementPages(HnswBuildState * buildstate)
{ {
Relation index = buildstate->index; Relation index = buildstate->index;
ForkNumber forkNum = buildstate->forkNum; ForkNumber forkNum = buildstate->forkNum;
int dimensions = buildstate->dimensions;
Size etupSize;
Size maxSize; Size maxSize;
HnswElementTuple etup; HnswElementTuple etup;
HnswNeighborTuple ntup; HnswNeighborTuple ntup;
@@ -119,10 +118,9 @@ CreateElementPages(HnswBuildState * buildstate)
/* Calculate sizes */ /* Calculate sizes */
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)); maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions);
/* Allocate once */ /* Allocate once */
etup = palloc0(etupSize); etup = palloc0(maxSize);
ntup = palloc0(maxSize); ntup = palloc0(maxSize);
/* Prepare first page */ /* Prepare first page */
@@ -134,12 +132,14 @@ CreateElementPages(HnswBuildState * buildstate)
foreach(lc, buildstate->elements) foreach(lc, buildstate->elements)
{ {
HnswElement element = lfirst(lc); HnswElement element = lfirst(lc);
Size etupSize;
Size ntupSize; Size ntupSize;
Size combinedSize; Size combinedSize;
HnswSetElementTuple(etup, element); HnswSetElementTuple(etup, element);
/* Calculate sizes */ /* Calculate sizes */
etupSize = HNSW_ELEMENT_TUPLE_SIZE(element->value);
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m); ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(element->level, buildstate->m);
combinedSize = etupSize + ntupSize + sizeof(ItemIdData); combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
@@ -276,18 +276,15 @@ InsertTuple(Relation index, Datum *values, HnswElement element, HnswBuildState *
int m = buildstate->m; int m = buildstate->m;
/* Detoast once for all calls */ /* Detoast once for all calls */
Datum value = PointerGetDatum(PG_DETOAST_DATUM(values[0])); element->value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
/* Normalize if needed */ /* Normalize if needed */
if (buildstate->normprocinfo != NULL) if (buildstate->normprocinfo != NULL)
{ {
if (!HnswNormValue(buildstate->normprocinfo, collation, &value, buildstate->normvec)) if (!HnswNormValue(buildstate->normprocinfo, collation, &element->value, buildstate->normvec))
return false; return false;
} }
/* Copy value to element so accessible outside of memory context */
memcpy(element->vec, DatumGetVector(value), VECTOR_SIZE(buildstate->dimensions));
/* Insert element in graph */ /* Insert element in graph */
HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false); HnswInsertElement(element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
@@ -363,7 +360,6 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
/* Allocate necessary memory outside of memory context */ /* Allocate necessary memory outside of memory context */
element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel); element = HnswInitElement(tid, buildstate->m, buildstate->ml, buildstate->maxLevel);
element->vec = palloc(VECTOR_SIZE(buildstate->dimensions));
/* Use memory context since detoast can allocate */ /* Use memory context since detoast can allocate */
oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx); oldCtx = MemoryContextSwitchTo(buildstate->tmpCtx);
@@ -371,9 +367,8 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
/* Insert tuple */ /* Insert tuple */
inserted = InsertTuple(index, values, element, buildstate, &dup); inserted = InsertTuple(index, values, element, buildstate, &dup);
/* Reset memory context */ /* Switch memory context */
MemoryContextSwitchTo(oldCtx); MemoryContextSwitchTo(oldCtx);
MemoryContextReset(buildstate->tmpCtx);
/* Add outside memory context */ /* Add outside memory context */
if (dup != NULL) if (dup != NULL)
@@ -381,9 +376,16 @@ BuildCallback(Relation index, CALLBACK_ITEM_POINTER, Datum *values,
/* Add to buildstate or free */ /* Add to buildstate or free */
if (inserted) if (inserted)
{
element->value = datumCopy(element->value, false, -1);
element->loaded = true;
buildstate->elements = lappend(buildstate->elements, element); buildstate->elements = lappend(buildstate->elements, element);
}
else else
HnswFreeElement(element); HnswFreeElement(element);
/* Reset memory context */
MemoryContextReset(buildstate->tmpCtx);
} }
/* /*
@@ -398,6 +400,7 @@ HnswGetMaxInMemoryElements(int m, double ml, int dimensions)
elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1); elementSize += sizeof(HnswNeighborArray) * (avgLevel + 1);
elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2)); elementSize += sizeof(HnswCandidate) * (m * (avgLevel + 2));
elementSize += sizeof(ItemPointerData); elementSize += sizeof(ItemPointerData);
/* TODO Handle non-vector types */
elementSize += VECTOR_SIZE(dimensions); elementSize += VECTOR_SIZE(dimensions);
return (maintenance_work_mem * 1024L) / elementSize; return (maintenance_work_mem * 1024L) / elementSize;
} }
@@ -415,7 +418,10 @@ InitBuildState(HnswBuildState * buildstate, Relation heap, Relation index, Index
buildstate->m = HnswGetM(index); buildstate->m = HnswGetM(index);
buildstate->efConstruction = HnswGetEfConstruction(index); buildstate->efConstruction = HnswGetEfConstruction(index);
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod; buildstate->dimensions = HnswGetDimensions(index);
if (buildstate->dimensions < 0)
buildstate->dimensions = TupleDescAttr(index->rd_att, 0)->atttypmod;
/* Require column to have dimensions to be indexed */ /* Require column to have dimensions to be indexed */
if (buildstate->dimensions < 0) if (buildstate->dimensions < 0)

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@@ -123,7 +123,6 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
Size minCombinedSize; Size minCombinedSize;
HnswElementTuple etup; HnswElementTuple etup;
BlockNumber currentPage = insertPage; BlockNumber currentPage = insertPage;
int dimensions = e->vec->dim;
HnswNeighborTuple ntup; HnswNeighborTuple ntup;
Buffer nbuf; Buffer nbuf;
Page npage; Page npage;
@@ -132,7 +131,7 @@ WriteNewElementPages(Relation index, HnswElement e, int m, BlockNumber insertPag
BlockNumber newInsertPage = InvalidBlockNumber; BlockNumber newInsertPage = InvalidBlockNumber;
/* Calculate sizes */ /* Calculate sizes */
etupSize = HNSW_ELEMENT_TUPLE_SIZE(dimensions); etupSize = HNSW_ELEMENT_TUPLE_SIZE(e->value);
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m); ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(e->level, m);
combinedSize = etupSize + ntupSize + sizeof(ItemIdData); combinedSize = etupSize + ntupSize + sizeof(ItemIdData);
maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData)); maxSize = BLCKSZ - MAXALIGN(SizeOfPageHeaderData) - MAXALIGN(sizeof(HnswPageOpaqueData));
@@ -411,7 +410,7 @@ HnswAddDuplicate(Relation index, HnswElement element, HnswElement dup)
Buffer buf; Buffer buf;
Page page; Page page;
GenericXLogState *state; GenericXLogState *state;
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->vec->dim); Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(dup->value);
HnswElementTuple etup; HnswElementTuple etup;
int i; int i;
@@ -522,7 +521,7 @@ HnswInsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_ti
/* Create an element */ /* Create an element */
element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m)); element = HnswInitElement(heap_tid, m, HnswGetMl(m), HnswGetMaxLevel(m));
element->vec = DatumGetVector(value); element->value = value;
/* Prevent concurrent inserts when likely updating entry point */ /* Prevent concurrent inserts when likely updating entry point */
if (entryPoint == NULL || element->level > entryPoint->level) if (entryPoint == NULL || element->level > entryPoint->level)

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@@ -4,6 +4,7 @@
#include "hnsw.h" #include "hnsw.h"
#include "storage/bufmgr.h" #include "storage/bufmgr.h"
#include "utils/datum.h"
#include "vector.h" #include "vector.h"
/* /*
@@ -34,16 +35,30 @@ HnswGetEfConstruction(Relation index)
return HNSW_DEFAULT_EF_CONSTRUCTION; return HNSW_DEFAULT_EF_CONSTRUCTION;
} }
/*
* Get the number of dimensions in the index
*/
int
HnswGetDimensions(Relation index)
{
HnswOptions *opts = (HnswOptions *) index->rd_options;
if (opts)
return opts->dimensions;
return HNSW_DEFAULT_DIMENSIONS;
}
/* /*
* Get proc * Get proc
*/ */
FmgrInfo * FmgrInfo *
HnswOptionalProcInfo(Relation rel, uint16 procnum) HnswOptionalProcInfo(Relation index, uint16 procnum)
{ {
if (!OidIsValid(index_getprocid(rel, 1, procnum))) if (!OidIsValid(index_getprocid(index, 1, procnum)))
return NULL; return NULL;
return index_getprocinfo(rel, 1, procnum); return index_getprocinfo(index, 1, procnum);
} }
/* /*
@@ -143,6 +158,17 @@ HnswInitNeighbors(HnswElement element, int m)
} }
} }
/*
* Free neighbors
*/
static void
HnswFreeNeighbors(HnswElement element)
{
for (int lc = 0; lc <= element->level; lc++)
pfree(element->neighbors[lc].items);
pfree(element->neighbors);
}
/* /*
* Allocate an element * Allocate an element
*/ */
@@ -174,11 +200,10 @@ HnswInitElement(ItemPointer heaptid, int m, double ml, int maxLevel)
void void
HnswFreeElement(HnswElement element) HnswFreeElement(HnswElement element)
{ {
HnswFreeNeighbors(element);
list_free_deep(element->heaptids); list_free_deep(element->heaptids);
for (int lc = 0; lc <= element->level; lc++) if (element->loaded)
pfree(element->neighbors[lc].items); pfree(DatumGetPointer(element->value));
pfree(element->neighbors);
pfree(element->vec);
pfree(element); pfree(element);
} }
@@ -205,7 +230,7 @@ HnswInitElementFromBlock(BlockNumber blkno, OffsetNumber offno)
element->blkno = blkno; element->blkno = blkno;
element->offno = offno; element->offno = offno;
element->neighbors = NULL; element->neighbors = NULL;
element->vec = NULL; element->loaded = false;
return element; return element;
} }
@@ -315,7 +340,7 @@ HnswSetElementTuple(HnswElementTuple etup, HnswElement element)
else else
ItemPointerSetInvalid(&etup->heaptids[i]); ItemPointerSetInvalid(&etup->heaptids[i]);
} }
memcpy(&etup->vec, element->vec, VECTOR_SIZE(element->vec->dim)); memcpy(&etup->value, DatumGetPointer(element->value), VARSIZE_ANY(element->value));
} }
/* /*
@@ -438,8 +463,10 @@ HnswLoadElementFromTuple(HnswElement element, HnswElementTuple etup, bool loadHe
if (loadVec) if (loadVec)
{ {
element->vec = palloc(VECTOR_SIZE(etup->vec.dim)); Datum value = PointerGetDatum(&etup->value);
memcpy(element->vec, &etup->vec, VECTOR_SIZE(etup->vec.dim));
element->value = datumCopy(value, false, -1);
element->loaded = true;
} }
} }
@@ -467,7 +494,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
/* Calculate distance */ /* Calculate distance */
if (distance != NULL) if (distance != NULL)
*distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->vec))); *distance = (float) DatumGetFloat8(FunctionCall2Coll(procinfo, collation, *q, PointerGetDatum(&etup->value)));
UnlockReleaseBuffer(buf); UnlockReleaseBuffer(buf);
} }
@@ -478,7 +505,7 @@ HnswLoadElement(HnswElement element, float *distance, Datum *q, Relation index,
static float static float
GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation) GetCandidateDistance(HnswCandidate * hc, Datum q, FmgrInfo *procinfo, Oid collation)
{ {
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, PointerGetDatum(hc->element->vec))); return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, q, hc->element->value));
} }
/* /*
@@ -713,7 +740,7 @@ HnswGetDistance(HnswElement a, HnswElement b, int lc, FmgrInfo *procinfo, Oid co
} }
} }
return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(a->vec), PointerGetDatum(b->vec))); return DatumGetFloat8(FunctionCall2Coll(procinfo, collation, a->value, b->value));
} }
/* /*
@@ -796,7 +823,7 @@ HnswFindDuplicate(HnswElement e)
HnswCandidate *neighbor = &neighbors->items[i]; HnswCandidate *neighbor = &neighbors->items[i];
/* Exit early since ordered by distance */ /* Exit early since ordered by distance */
if (vector_cmp_internal(e->vec, neighbor->element->vec) != 0) if (!datumIsEqual(e->value, neighbor->element->value, false, -1))
break; break;
/* Check for space */ /* Check for space */
@@ -871,13 +898,13 @@ HnswUpdateConnection(HnswElement element, HnswCandidate * hc, int m, int lc, int
/* Load elements on insert */ /* Load elements on insert */
if (index != NULL) if (index != NULL)
{ {
Datum q = PointerGetDatum(hc->element->vec); Datum q = hc->element->value;
for (int i = 0; i < currentNeighbors->length; i++) for (int i = 0; i < currentNeighbors->length; i++)
{ {
HnswCandidate *hc3 = &currentNeighbors->items[i]; HnswCandidate *hc3 = &currentNeighbors->items[i];
if (hc3->element->vec == NULL) if (!hc3->element->loaded)
HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true); HnswLoadElement(hc3->element, &hc3->distance, &q, index, procinfo, collation, true);
else else
hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation); hc3->distance = GetCandidateDistance(hc3, q, procinfo, collation);
@@ -959,7 +986,7 @@ HnswInsertElement(HnswElement element, HnswElement entryPoint, Relation index, F
List *w; List *w;
int level = element->level; int level = element->level;
int entryLevel; int entryLevel;
Datum q = PointerGetDatum(element->vec); Datum q = element->value;
HnswElement skipElement = existing ? element : NULL; HnswElement skipElement = existing ? element : NULL;
/* No neighbors if no entry point */ /* No neighbors if no entry point */

View File

@@ -93,7 +93,7 @@ RemoveHeapTids(HnswVacuumState * vacuumstate)
if (itemUpdated) if (itemUpdated)
{ {
Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim); Size etupSize = HNSW_ELEMENT_TUPLE_SIZE(PointerGetDatum(&etup->value));
/* Mark rest as invalid */ /* Mark rest as invalid */
for (int i = idx; i < HNSW_HEAPTIDS; i++) for (int i = idx; i < HNSW_HEAPTIDS; i++)
@@ -485,6 +485,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
HnswNeighborTuple ntup; HnswNeighborTuple ntup;
Size etupSize; Size etupSize;
Size ntupSize; Size ntupSize;
Datum value;
Buffer nbuf; Buffer nbuf;
Page npage; Page npage;
BlockNumber neighborPage; BlockNumber neighborPage;
@@ -508,8 +509,11 @@ MarkDeleted(HnswVacuumState * vacuumstate)
if (ItemPointerIsValid(&etup->heaptids[0])) if (ItemPointerIsValid(&etup->heaptids[0]))
continue; continue;
/* Get datum */
value = PointerGetDatum(&etup->value);
/* Calculate sizes */ /* Calculate sizes */
etupSize = HNSW_ELEMENT_TUPLE_SIZE(etup->vec.dim); etupSize = HNSW_ELEMENT_TUPLE_SIZE(value);
ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m); ntupSize = HNSW_NEIGHBOR_TUPLE_SIZE(etup->level, vacuumstate->m);
/* Get neighbor page */ /* Get neighbor page */
@@ -532,7 +536,7 @@ MarkDeleted(HnswVacuumState * vacuumstate)
/* Overwrite element */ /* Overwrite element */
etup->deleted = 1; etup->deleted = 1;
MemSet(&etup->vec.x, 0, etup->vec.dim * sizeof(float)); MemSet(&etup->value, 0, VARSIZE_ANY(value));
/* Overwrite neighbors */ /* Overwrite neighbors */
for (int i = 0; i < ntup->count; i++) for (int i = 0; i < ntup->count; i++)

View File

@@ -506,29 +506,30 @@ CreateListPages(Relation index, VectorArray centers, int dimensions,
Buffer buf; Buffer buf;
Page page; Page page;
GenericXLogState *state; GenericXLogState *state;
OffsetNumber offno;
Size itemsz;
IvfflatList list; IvfflatList list;
itemsz = MAXALIGN(IVFFLAT_LIST_SIZE(dimensions)); list = palloc0(BLCKSZ);
list = palloc(itemsz);
buf = IvfflatNewBuffer(index, forkNum); buf = IvfflatNewBuffer(index, forkNum);
IvfflatInitRegisterPage(index, &buf, &page, &state); IvfflatInitRegisterPage(index, &buf, &page, &state);
for (int i = 0; i < lists; i++) for (int i = 0; i < lists; i++)
{ {
OffsetNumber offno;
Datum center = PointerGetDatum(VectorArrayGet(centers, i));
Size listSize = MAXALIGN(IVFFLAT_LIST_SIZE(center));
/* Load list */ /* Load list */
list->startPage = InvalidBlockNumber; list->startPage = InvalidBlockNumber;
list->insertPage = InvalidBlockNumber; list->insertPage = InvalidBlockNumber;
memcpy(&list->center, VectorArrayGet(centers, i), VECTOR_SIZE(dimensions)); memcpy(&list->center, DatumGetPointer(center), VARSIZE_ANY(center));
/* Ensure free space */ /* Ensure free space */
if (PageGetFreeSpace(page) < itemsz) if (PageGetFreeSpace(page) < listSize)
IvfflatAppendPage(index, &buf, &page, &state, forkNum); IvfflatAppendPage(index, &buf, &page, &state, forkNum);
/* Add the item */ /* Add the item */
offno = PageAddItem(page, (Item) list, itemsz, InvalidOffsetNumber, false, false); offno = PageAddItem(page, (Item) list, listSize, InvalidOffsetNumber, false, false);
if (offno == InvalidOffsetNumber) if (offno == InvalidOffsetNumber)
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index)); elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));

View File

@@ -52,7 +52,7 @@
#define PROGRESS_IVFFLAT_PHASE_ASSIGN 3 #define PROGRESS_IVFFLAT_PHASE_ASSIGN 3
#define PROGRESS_IVFFLAT_PHASE_LOAD 4 #define PROGRESS_IVFFLAT_PHASE_LOAD 4
#define IVFFLAT_LIST_SIZE(_dim) (offsetof(IvfflatListData, center) + VECTOR_SIZE(_dim)) #define IVFFLAT_LIST_SIZE(_datum) (offsetof(IvfflatListData, center) + VARSIZE_ANY(_datum))
#define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page)) #define IvfflatPageGetOpaque(page) ((IvfflatPageOpaque) PageGetSpecialPointer(page))
#define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page)) #define IvfflatPageGetMeta(page) ((IvfflatMetaPageData *) PageGetContents(page))
@@ -229,7 +229,7 @@ typedef struct IvfflatListData
{ {
BlockNumber startPage; BlockNumber startPage;
BlockNumber insertPage; BlockNumber insertPage;
Vector center; char center[FLEXIBLE_ARRAY_MEMBER];
} IvfflatListData; } IvfflatListData;
typedef IvfflatListData * IvfflatList; typedef IvfflatListData * IvfflatList;
@@ -277,7 +277,7 @@ VectorArray VectorArrayInit(int maxlen, int dimensions);
void VectorArrayFree(VectorArray arr); void VectorArrayFree(VectorArray arr);
void PrintVectorArray(char *msg, VectorArray arr); void PrintVectorArray(char *msg, VectorArray arr);
void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers); void IvfflatKmeans(Relation index, VectorArray samples, VectorArray centers);
FmgrInfo *IvfflatOptionalProcInfo(Relation rel, uint16 procnum); FmgrInfo *IvfflatOptionalProcInfo(Relation index, uint16 procnum);
bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result); bool IvfflatNormValue(FmgrInfo *procinfo, Oid collation, Datum *value, Vector * result);
int IvfflatGetLists(Relation index); int IvfflatGetLists(Relation index);
void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions); void IvfflatGetMetaPageInfo(Relation index, int *lists, int *dimensions);

View File

@@ -11,36 +11,37 @@
* Find the list that minimizes the distance function * Find the list that minimizes the distance function
*/ */
static void static void
FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo * listInfo) FindInsertPage(Relation index, Datum *values, BlockNumber *insertPage, ListInfo * listInfo)
{ {
Buffer cbuf;
Page cpage;
IvfflatList list;
double distance;
double minDistance = DBL_MAX; double minDistance = DBL_MAX;
BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO; BlockNumber nextblkno = IVFFLAT_HEAD_BLKNO;
FmgrInfo *procinfo; FmgrInfo *procinfo;
Oid collation; Oid collation;
OffsetNumber offno;
OffsetNumber maxoffno;
/* Avoid compiler warning */ /* Avoid compiler warning */
listInfo->blkno = nextblkno; listInfo->blkno = nextblkno;
listInfo->offno = FirstOffsetNumber; listInfo->offno = FirstOffsetNumber;
procinfo = index_getprocinfo(rel, 1, IVFFLAT_DISTANCE_PROC); procinfo = index_getprocinfo(index, 1, IVFFLAT_DISTANCE_PROC);
collation = rel->rd_indcollation[0]; collation = index->rd_indcollation[0];
/* Search all list pages */ /* Search all list pages */
while (BlockNumberIsValid(nextblkno)) while (BlockNumberIsValid(nextblkno))
{ {
cbuf = ReadBuffer(rel, nextblkno); Buffer cbuf;
Page cpage;
OffsetNumber maxoffno;
cbuf = ReadBuffer(index, nextblkno);
LockBuffer(cbuf, BUFFER_LOCK_SHARE); LockBuffer(cbuf, BUFFER_LOCK_SHARE);
cpage = BufferGetPage(cbuf); cpage = BufferGetPage(cbuf);
maxoffno = PageGetMaxOffsetNumber(cpage); maxoffno = PageGetMaxOffsetNumber(cpage);
for (offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno)) for (OffsetNumber offno = FirstOffsetNumber; offno <= maxoffno; offno = OffsetNumberNext(offno))
{ {
IvfflatList list;
double distance;
list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno)); list = (IvfflatList) PageGetItem(cpage, PageGetItemId(cpage, offno));
distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center))); distance = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, values[0], PointerGetDatum(&list->center)));
@@ -63,7 +64,7 @@ FindInsertPage(Relation rel, Datum *values, BlockNumber *insertPage, ListInfo *
* Insert a tuple into the index * Insert a tuple into the index
*/ */
static void static void
InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel) InsertTuple(Relation index, Datum *values, bool *isnull, ItemPointer heap_tid, Relation heapRel)
{ {
IndexTuple itup; IndexTuple itup;
Datum value; Datum value;
@@ -80,20 +81,20 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
value = PointerGetDatum(PG_DETOAST_DATUM(values[0])); value = PointerGetDatum(PG_DETOAST_DATUM(values[0]));
/* Normalize if needed */ /* Normalize if needed */
normprocinfo = IvfflatOptionalProcInfo(rel, IVFFLAT_NORM_PROC); normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
if (normprocinfo != NULL) if (normprocinfo != NULL)
{ {
if (!IvfflatNormValue(normprocinfo, rel->rd_indcollation[0], &value, NULL)) if (!IvfflatNormValue(normprocinfo, index->rd_indcollation[0], &value, NULL))
return; return;
} }
/* Find the insert page - sets the page and list info */ /* Find the insert page - sets the page and list info */
FindInsertPage(rel, values, &insertPage, &listInfo); FindInsertPage(index, values, &insertPage, &listInfo);
Assert(BlockNumberIsValid(insertPage)); Assert(BlockNumberIsValid(insertPage));
originalInsertPage = insertPage; originalInsertPage = insertPage;
/* Form tuple */ /* Form tuple */
itup = index_form_tuple(RelationGetDescr(rel), &value, isnull); itup = index_form_tuple(RelationGetDescr(index), &value, isnull);
itup->t_tid = *heap_tid; itup->t_tid = *heap_tid;
/* Get tuple size */ /* Get tuple size */
@@ -103,10 +104,10 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
/* Find a page to insert the item */ /* Find a page to insert the item */
for (;;) for (;;)
{ {
buf = ReadBuffer(rel, insertPage); buf = ReadBuffer(index, insertPage);
LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE); LockBuffer(buf, BUFFER_LOCK_EXCLUSIVE);
state = GenericXLogStart(rel); state = GenericXLogStart(index);
page = GenericXLogRegisterBuffer(state, buf, 0); page = GenericXLogRegisterBuffer(state, buf, 0);
if (PageGetFreeSpace(page) >= itemsz) if (PageGetFreeSpace(page) >= itemsz)
@@ -126,9 +127,9 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
Page newpage; Page newpage;
/* Add a new page */ /* Add a new page */
LockRelationForExtension(rel, ExclusiveLock); LockRelationForExtension(index, ExclusiveLock);
newbuf = IvfflatNewBuffer(rel, MAIN_FORKNUM); newbuf = IvfflatNewBuffer(index, MAIN_FORKNUM);
UnlockRelationForExtension(rel, ExclusiveLock); UnlockRelationForExtension(index, ExclusiveLock);
/* Init new page */ /* Init new page */
newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE); newpage = GenericXLogRegisterBuffer(state, newbuf, GENERIC_XLOG_FULL_IMAGE);
@@ -149,7 +150,7 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
UnlockReleaseBuffer(buf); UnlockReleaseBuffer(buf);
/* Prepare new buffer */ /* Prepare new buffer */
state = GenericXLogStart(rel); state = GenericXLogStart(index);
buf = newbuf; buf = newbuf;
page = GenericXLogRegisterBuffer(state, buf, 0); page = GenericXLogRegisterBuffer(state, buf, 0);
break; break;
@@ -158,13 +159,13 @@ InsertTuple(Relation rel, Datum *values, bool *isnull, ItemPointer heap_tid, Rel
/* Add to next offset */ /* Add to next offset */
if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber) if (PageAddItem(page, (Item) itup, itemsz, InvalidOffsetNumber, false, false) == InvalidOffsetNumber)
elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(rel)); elog(ERROR, "failed to add index item to \"%s\"", RelationGetRelationName(index));
IvfflatCommitBuffer(buf, state); IvfflatCommitBuffer(buf, state);
/* Update the insert page */ /* Update the insert page */
if (insertPage != originalInsertPage) if (insertPage != originalInsertPage)
IvfflatUpdateList(rel, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM); IvfflatUpdateList(index, listInfo, insertPage, originalInsertPage, InvalidBlockNumber, MAIN_FORKNUM);
} }
/* /*

View File

@@ -17,10 +17,6 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
FmgrInfo *procinfo; FmgrInfo *procinfo;
Oid collation; Oid collation;
int64 j; int64 j;
double distance;
double sum;
double choice;
Vector *vec;
float *weight = palloc(samples->length * sizeof(float)); float *weight = palloc(samples->length * sizeof(float));
int numCenters = centers->maxlen; int numCenters = centers->maxlen;
int numSamples = samples->length; int numSamples = samples->length;
@@ -33,17 +29,21 @@ InitCenters(Relation index, VectorArray samples, VectorArray centers, float *low
centers->length++; centers->length++;
for (j = 0; j < numSamples; j++) for (j = 0; j < numSamples; j++)
weight[j] = DBL_MAX; weight[j] = FLT_MAX;
for (int i = 0; i < numCenters; i++) for (int i = 0; i < numCenters; i++)
{ {
double sum;
double choice;
CHECK_FOR_INTERRUPTS(); CHECK_FOR_INTERRUPTS();
sum = 0.0; sum = 0.0;
for (j = 0; j < numSamples; j++) for (j = 0; j < numSamples; j++)
{ {
vec = VectorArrayGet(samples, j); Vector *vec = VectorArrayGet(samples, j);
double distance;
/* Only need to compute distance for new center */ /* Only need to compute distance for new center */
/* TODO Use triangle inequality to reduce distance calculations */ /* TODO Use triangle inequality to reduce distance calculations */
@@ -112,7 +112,6 @@ CompareVectors(const void *a, const void *b)
static void static void
QuickCenters(Relation index, VectorArray samples, VectorArray centers) QuickCenters(Relation index, VectorArray samples, VectorArray centers)
{ {
Vector *vec;
int dimensions = centers->dim; int dimensions = centers->dim;
Oid collation = index->rd_indcollation[0]; Oid collation = index->rd_indcollation[0];
FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC); FmgrInfo *normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_KMEANS_NORM_PROC);
@@ -123,7 +122,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors); qsort(samples->items, samples->length, VECTOR_SIZE(samples->dim), CompareVectors);
for (int i = 0; i < samples->length; i++) for (int i = 0; i < samples->length; i++)
{ {
vec = VectorArrayGet(samples, i); Vector *vec = VectorArrayGet(samples, i);
if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0) if (i == 0 || CompareVectors(vec, VectorArrayGet(samples, i - 1)) != 0)
{ {
@@ -136,7 +135,7 @@ QuickCenters(Relation index, VectorArray samples, VectorArray centers)
/* Fill remaining with random data */ /* Fill remaining with random data */
while (centers->length < centers->maxlen) while (centers->length < centers->maxlen)
{ {
vec = VectorArrayGet(centers, centers->length); Vector *vec = VectorArrayGet(centers, centers->length);
SET_VARSIZE(vec, VECTOR_SIZE(dimensions)); SET_VARSIZE(vec, VECTOR_SIZE(dimensions));
vec->dim = dimensions; vec->dim = dimensions;
@@ -168,7 +167,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
Oid collation; Oid collation;
Vector *vec; Vector *vec;
Vector *newCenter; Vector *newCenter;
int iteration;
int64 j; int64 j;
int64 k; int64 k;
int dimensions = centers->dim; int dimensions = centers->dim;
@@ -182,14 +180,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
float *s; float *s;
float *halfcdist; float *halfcdist;
float *newcdist; float *newcdist;
int changes;
double minDistance;
int closestCenter;
double distance;
bool rj;
bool rjreset;
double dxcx;
double dxc;
/* Calculate allocation sizes */ /* Calculate allocation sizes */
Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim); Size samplesSize = VECTOR_ARRAY_SIZE(samples->maxlen, samples->dim);
@@ -247,14 +237,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
/* Assign each x to its closest initial center c(x) = argmin d(x,c) */ /* Assign each x to its closest initial center c(x) = argmin d(x,c) */
for (j = 0; j < numSamples; j++) for (j = 0; j < numSamples; j++)
{ {
minDistance = DBL_MAX; float minDistance = FLT_MAX;
closestCenter = 0; int closestCenter = 0;
/* Find closest center */ /* Find closest center */
for (k = 0; k < numCenters; k++) for (k = 0; k < numCenters; k++)
{ {
/* TODO Use Lemma 1 in k-means++ initialization */ /* TODO Use Lemma 1 in k-means++ initialization */
distance = lowerBound[j * numCenters + k]; float distance = lowerBound[j * numCenters + k];
if (distance < minDistance) if (distance < minDistance)
{ {
@@ -268,13 +258,14 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
} }
/* Give 500 iterations to converge */ /* Give 500 iterations to converge */
for (iteration = 0; iteration < 500; iteration++) for (int iteration = 0; iteration < 500; iteration++)
{ {
int changes = 0;
bool rjreset;
/* Can take a while, so ensure we can interrupt */ /* Can take a while, so ensure we can interrupt */
CHECK_FOR_INTERRUPTS(); CHECK_FOR_INTERRUPTS();
changes = 0;
/* Step 1: For all centers, compute distance */ /* Step 1: For all centers, compute distance */
for (j = 0; j < numCenters; j++) for (j = 0; j < numCenters; j++)
{ {
@@ -282,7 +273,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
for (k = j + 1; k < numCenters; k++) for (k = j + 1; k < numCenters; k++)
{ {
distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k)))); float distance = 0.5 * DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
halfcdist[j * numCenters + k] = distance; halfcdist[j * numCenters + k] = distance;
halfcdist[k * numCenters + j] = distance; halfcdist[k * numCenters + j] = distance;
} }
@@ -291,10 +283,12 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
/* For all centers c, compute s(c) */ /* For all centers c, compute s(c) */
for (j = 0; j < numCenters; j++) for (j = 0; j < numCenters; j++)
{ {
minDistance = DBL_MAX; float minDistance = FLT_MAX;
for (k = 0; k < numCenters; k++) for (k = 0; k < numCenters; k++)
{ {
float distance;
if (j == k) if (j == k)
continue; continue;
@@ -310,6 +304,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
for (j = 0; j < numSamples; j++) for (j = 0; j < numSamples; j++)
{ {
bool rj;
/* Step 2: Identify all points x such that u(x) <= s(c(x)) */ /* Step 2: Identify all points x such that u(x) <= s(c(x)) */
if (upperBound[j] <= s[closestCenters[j]]) if (upperBound[j] <= s[closestCenters[j]])
continue; continue;
@@ -318,6 +314,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
for (k = 0; k < numCenters; k++) for (k = 0; k < numCenters; k++)
{ {
float dxcx;
/* Step 3: For all remaining points x and centers c */ /* Step 3: For all remaining points x and centers c */
if (k == closestCenters[j]) if (k == closestCenters[j])
continue; continue;
@@ -347,7 +345,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
/* Step 3b */ /* Step 3b */
if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k]) if (dxcx > lowerBound[j * numCenters + k] || dxcx > halfcdist[closestCenters[j] * numCenters + k])
{ {
dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k)))); float dxc = DatumGetFloat8(FunctionCall2Coll(procinfo, collation, PointerGetDatum(vec), PointerGetDatum(VectorArrayGet(centers, k))));
/* d(x,c) calculated */ /* d(x,c) calculated */
lowerBound[j * numCenters + k] = dxc; lowerBound[j * numCenters + k] = dxc;
@@ -361,7 +359,6 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
changes++; changes++;
} }
} }
} }
} }
@@ -378,6 +375,8 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
for (j = 0; j < numSamples; j++) for (j = 0; j < numSamples; j++)
{ {
int closestCenter;
vec = VectorArrayGet(samples, j); vec = VectorArrayGet(samples, j);
closestCenter = closestCenters[j]; closestCenter = closestCenters[j];
@@ -426,7 +425,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
{ {
for (k = 0; k < numCenters; k++) for (k = 0; k < numCenters; k++)
{ {
distance = lowerBound[j * numCenters + k] - newcdist[k]; float distance = lowerBound[j * numCenters + k] - newcdist[k];
if (distance < 0) if (distance < 0)
distance = 0; distance = 0;
@@ -442,7 +441,7 @@ ElkanKmeans(Relation index, VectorArray samples, VectorArray centers)
/* Step 7 */ /* Step 7 */
for (j = 0; j < numCenters; j++) for (j = 0; j < numCenters; j++)
memcpy(VectorArrayGet(centers, j), VectorArrayGet(newCenters, j), VECTOR_SIZE(dimensions)); VectorArraySet(centers, j, VectorArrayGet(newCenters, j));
if (changes == 0 && iteration != 0) if (changes == 0 && iteration != 0)
break; break;
@@ -465,9 +464,6 @@ static void
CheckCenters(Relation index, VectorArray centers) CheckCenters(Relation index, VectorArray centers)
{ {
FmgrInfo *normprocinfo; FmgrInfo *normprocinfo;
Oid collation;
Vector *vec;
double norm;
if (centers->length != centers->maxlen) if (centers->length != centers->maxlen)
elog(ERROR, "Not enough centers. Please report a bug."); elog(ERROR, "Not enough centers. Please report a bug.");
@@ -475,7 +471,7 @@ CheckCenters(Relation index, VectorArray centers)
/* Ensure no NaN or infinite values */ /* Ensure no NaN or infinite values */
for (int i = 0; i < centers->length; i++) for (int i = 0; i < centers->length; i++)
{ {
vec = VectorArrayGet(centers, i); Vector *vec = VectorArrayGet(centers, i);
for (int j = 0; j < vec->dim; j++) for (int j = 0; j < vec->dim; j++)
{ {
@@ -501,11 +497,12 @@ CheckCenters(Relation index, VectorArray centers)
normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC); normprocinfo = IvfflatOptionalProcInfo(index, IVFFLAT_NORM_PROC);
if (normprocinfo != NULL) if (normprocinfo != NULL)
{ {
collation = index->rd_indcollation[0]; Oid collation = index->rd_indcollation[0];
for (int i = 0; i < centers->length; i++) for (int i = 0; i < centers->length; i++)
{ {
norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i)))); double norm = DatumGetFloat8(FunctionCall1Coll(normprocinfo, collation, PointerGetDatum(VectorArrayGet(centers, i))));
if (norm == 0) if (norm == 0)
elog(ERROR, "Zero norm detected. Please report a bug."); elog(ERROR, "Zero norm detected. Please report a bug.");
} }

View File

@@ -57,12 +57,12 @@ IvfflatGetLists(Relation index)
* Get proc * Get proc
*/ */
FmgrInfo * FmgrInfo *
IvfflatOptionalProcInfo(Relation rel, uint16 procnum) IvfflatOptionalProcInfo(Relation index, uint16 procnum)
{ {
if (!OidIsValid(index_getprocid(rel, 1, procnum))) if (!OidIsValid(index_getprocid(index, 1, procnum)))
return NULL; return NULL;
return index_getprocinfo(rel, 1, procnum); return index_getprocinfo(index, 1, procnum);
} }
/* /*

View File

@@ -54,21 +54,21 @@ SELECT vector_norm('[3e37,4e37]')::real;
5e+37 5e+37
(1 row) (1 row)
SELECT l2_distance('[0,0]', '[3,4]'); SELECT l2_distance('[0,0]'::vector, '[3,4]');
l2_distance l2_distance
------------- -------------
5 5
(1 row) (1 row)
SELECT l2_distance('[0,0]', '[0,1]'); SELECT l2_distance('[0,0]'::vector, '[0,1]');
l2_distance l2_distance
------------- -------------
1 1
(1 row) (1 row)
SELECT l2_distance('[1,2]', '[3]'); SELECT l2_distance('[1,2]'::vector, '[3]');
ERROR: different vector dimensions 2 and 1 ERROR: different vector dimensions 2 and 1
SELECT l2_distance('[3e38]', '[-3e38]'); SELECT l2_distance('[3e38]'::vector, '[-3e38]');
l2_distance l2_distance
------------- -------------
Infinity Infinity

View File

@@ -13,10 +13,10 @@ SELECT vector_norm('[3,4]');
SELECT vector_norm('[0,1]'); SELECT vector_norm('[0,1]');
SELECT vector_norm('[3e37,4e37]')::real; SELECT vector_norm('[3e37,4e37]')::real;
SELECT l2_distance('[0,0]', '[3,4]'); SELECT l2_distance('[0,0]'::vector, '[3,4]');
SELECT l2_distance('[0,0]', '[0,1]'); SELECT l2_distance('[0,0]'::vector, '[0,1]');
SELECT l2_distance('[1,2]', '[3]'); SELECT l2_distance('[1,2]'::vector, '[3]');
SELECT l2_distance('[3e38]', '[-3e38]'); SELECT l2_distance('[3e38]'::vector, '[-3e38]');
SELECT inner_product('[1,2]', '[3,4]'); SELECT inner_product('[1,2]', '[3,4]');
SELECT inner_product('[1,2]', '[3]'); SELECT inner_product('[1,2]', '[3]');

93
test/t/019_hnsw_array.pl Normal file
View File

@@ -0,0 +1,93 @@
use strict;
use warnings;
use PostgresNode;
use TestLib;
use Test::More;
my $node;
my @queries = ();
my @expected;
my $limit = 20;
sub test_recall
{
my ($min, $operator) = @_;
my $correct = 0;
my $total = 0;
my $explain = $node->safe_psql("postgres", qq(
SET enable_seqscan = off;
EXPLAIN ANALYZE SELECT i FROM tst ORDER BY v $operator '$queries[0]' LIMIT $limit;
));
like($explain, qr/Index Scan/);
for my $i (0 .. $#queries)
{
my $actual = $node->safe_psql("postgres", qq(
SET enable_seqscan = off;
SELECT i FROM tst ORDER BY v $operator '$queries[$i]' LIMIT $limit;
));
my @actual_ids = split("\n", $actual);
my %actual_set = map { $_ => 1 } @actual_ids;
my @expected_ids = split("\n", $expected[$i]);
foreach (@expected_ids)
{
if (exists($actual_set{$_}))
{
$correct++;
}
$total++;
}
}
cmp_ok($correct / $total, ">=", $min, $operator);
}
# Initialize node
$node = get_new_node('node');
$node->init;
$node->start;
# Create table
$node->safe_psql("postgres", "CREATE EXTENSION vector;");
$node->safe_psql("postgres", "CREATE TABLE tst (i int4, v float4[3]);");
$node->safe_psql("postgres",
"INSERT INTO tst SELECT i, ARRAY[random(), random(), random()] FROM generate_series(1, 10000) i;"
);
# Generate queries
for (1 .. 20)
{
my $r1 = rand();
my $r2 = rand();
my $r3 = rand();
push(@queries, "{$r1,$r2,$r3}");
}
# Check each index type
my @operators = ("<->");
my @opclasses = ("float4_l2_ops");
for my $i (0 .. $#operators)
{
my $operator = $operators[$i];
my $opclass = $opclasses[$i];
# Get exact results
@expected = ();
foreach (@queries)
{
my $res = $node->safe_psql("postgres", "SELECT i FROM tst ORDER BY v $operator '$_' LIMIT $limit;");
push(@expected, $res);
}
# Add index
$node->safe_psql("postgres", "CREATE INDEX ON tst USING hnsw (v $opclass) WITH (dimensions = 3);");
my $min = $operator eq "<#>" ? 0.80 : 0.99;
test_recall($min, $operator);
}
done_testing();