Compare commits

..

18 Commits

Author SHA1 Message Date
Andrew Kane
ece6ed7a0d Added concatenate operator for vectors 2024-03-17 15:49:38 -07:00
Andrew Kane
b64a1482d9 Moved example [skip ci] 2024-03-16 15:20:26 -07:00
Andrew Kane
a5f2d70bc2 Use temp directory for installation instructions on Windows [skip ci] 2024-03-16 12:02:45 -07:00
Andrew Kane
f3fcb5e005 Moved installation notes for Windows [skip ci] 2024-03-16 11:47:18 -07:00
Andrew Kane
3a6e0afb9c Added installation notes for Windows [skip ci] 2024-03-16 11:35:55 -07:00
Andrew Kane
183d50bdbd Added note about creating indexes concurrently [skip ci] 2024-03-16 10:45:09 -07:00
Andrew Kane
bd776fee68 Updated readme [skip ci] 2024-03-16 10:44:45 -07:00
Andrew Kane
d30b113e4b Updated readme [skip ci] 2024-03-15 21:54:58 -07:00
Andrew Kane
fd3200f718 Updated readme [skip ci] 2024-03-15 21:47:57 -07:00
Andrew Kane
02c815d876 Added docs on tuning, monitoring, and scaling [skip ci] 2024-03-15 19:00:49 -07:00
Andrew Kane
4b2a7cc49d Improved performance section [skip ci] 2024-03-15 17:54:14 -07:00
Andrew Kane
da0ff998e9 Updated readme [skip ci] 2024-03-15 14:23:56 -07:00
Andrew Kane
cb36e24289 Improved portability section [skip ci] 2024-03-15 14:23:04 -07:00
Andrew Kane
b1d0d4c7a3 Improved troubleshooting docs [skip ci] 2024-03-15 14:01:24 -07:00
Andrew Kane
1dc6514b66 Updated comment [skip ci] 2024-03-15 12:38:14 -07:00
Andrew Kane
6c53f7ca02 Updated comment [skip ci] 2024-03-15 12:37:47 -07:00
Heikki Linnakangas
0d35a14198 Fix compiler warnings in strict C99 mode (#487)
Redefining a typedef is a C11 feature:

    In file included from src/hnsw.c:10:
    src/hnsw.h:147:5: warning: redefinition of typedef 'HnswElementData' is a C11 feature [-Wtypedef-redefinition]
    }                       HnswElementData;
                            ^
    src/hnsw.h:118:32: note: previous definition is here
    typedef struct HnswElementData HnswElementData;
                                   ^
    src/hnsw.h:163:5: warning: redefinition of typedef 'HnswNeighborArray' is a C11 feature [-Wtypedef-redefinition]
    }                       HnswNeighborArray;
                            ^
    src/hnsw.h:119:34: note: previous definition is here
    typedef struct HnswNeighborArray HnswNeighborArray;
                                     ^
    2 warnings generated.

I got these warnings when I built PostgreSQL with "CC=clang
CFLAGS=-std=gnu99"; other similar options would surely produce the
warnings too.
2024-03-12 02:02:33 -07:00
Andrew Kane
3ea2ce89be Reduced lock contention with parallel HNSW index builds 2024-03-11 20:16:55 -07:00
10 changed files with 164 additions and 20 deletions

View File

@@ -73,6 +73,7 @@ jobs:
postgres-version: 14 postgres-version: 14
- run: | - run: |
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^ call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^
cd %TEMP% && ^
nmake /NOLOGO /F Makefile.win && ^ nmake /NOLOGO /F Makefile.win && ^
nmake /NOLOGO /F Makefile.win install && ^ nmake /NOLOGO /F Makefile.win install && ^
nmake /NOLOGO /F Makefile.win installcheck && ^ nmake /NOLOGO /F Makefile.win installcheck && ^

View File

@@ -1,3 +1,7 @@
## 0.7.0 (unreleased)
- Added concatenate operator for vectors
## 0.6.2 (unreleased) ## 0.6.2 (unreleased)
- Reduced lock contention with parallel HNSW index builds - Reduced lock contention with parallel HNSW index builds

111
README.md
View File

@@ -26,7 +26,7 @@ make
make install # may need sudo make install # may need sudo
``` ```
See the [installation notes](#installation-notes) if you run into issues See the [installation notes](#installation-notes---linux-and-mac) if you run into issues
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector). You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector).
@@ -44,12 +44,15 @@ Then use `nmake` to build:
```cmd ```cmd
set "PGROOT=C:\Program Files\PostgreSQL\16" set "PGROOT=C:\Program Files\PostgreSQL\16"
cd %TEMP%
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git
cd pgvector cd pgvector
nmake /F Makefile.win nmake /F Makefile.win
nmake /F Makefile.win install nmake /F Makefile.win install
``` ```
See the [installation notes](#installation-notes---windows) if you run into issues
You can also install it with [Docker](#docker) or [conda-forge](#conda-forge). You can also install it with [Docker](#docker) or [conda-forge](#conda-forge).
## Getting Started ## Getting Started
@@ -410,13 +413,39 @@ You can use [Reciprocal Rank Fusion](https://github.com/pgvector/pgvector-python
## Performance ## Performance
### Tuning
Use a tool like [PgTune](https://pgtune.leopard.in.ua/) to set initial values for Postgres server parameters.
### Loading
Use `COPY` for bulk loading data ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/bulk_loading.py)).
```sql
COPY items (embedding) FROM STDIN WITH (FORMAT BINARY);
```
Add any indexes *after* loading the initial data for best performance.
### Indexing
See index build time for [HNSW](#index-build-time) and [IVFFlat](#index-build-time-1).
In production environments, create indexes concurrently to avoid blocking writes.
```sql
CREATE INDEX CONCURRENTLY ...
```
### Querying
Use `EXPLAIN ANALYZE` to debug performance. Use `EXPLAIN ANALYZE` to debug performance.
```sql ```sql
EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5; EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5;
``` ```
### Exact Search #### Exact Search
To speed up queries without an index, increase `max_parallel_workers_per_gather`. To speed up queries without an index, increase `max_parallel_workers_per_gather`.
@@ -430,7 +459,7 @@ If vectors are normalized to length 1 (like [OpenAI embeddings](https://platform
SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5; SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5;
``` ```
### Approximate Search #### Approximate Search
To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall). To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall).
@@ -438,7 +467,7 @@ To speed up queries with an IVFFlat index, increase the number of inverted lists
CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000); CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000);
``` ```
## Vacuuming ### Vacuuming
Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first. Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first.
@@ -447,6 +476,41 @@ REINDEX INDEX CONCURRENTLY index_name;
VACUUM table_name; VACUUM table_name;
``` ```
## Monitoring
Monitor performance with [pg_stat_statements](https://www.postgresql.org/docs/current/pgstatstatements.html) (be sure to add it to `shared_preload_libraries`).
```sql
CREATE EXTENSION pg_stat_statements;
```
Get the most time-consuming queries with:
```sql
SELECT query, calls, ROUND((total_plan_time + total_exec_time) / calls) AS avg_time_ms,
ROUND((total_plan_time + total_exec_time) / 60000) AS total_time_min
FROM pg_stat_statements ORDER BY total_plan_time + total_exec_time DESC LIMIT 20;
```
Note: Replace `total_plan_time + total_exec_time` with `total_time` for Postgres < 13
Monitor recall by comparing results from approximate search with exact search.
```sql
BEGIN;
SET LOCAL enable_indexscan = off; -- use exact search
SELECT ...
COMMIT;
```
## Scaling
Scale pgvector the same way you scale Postgres.
Scale vertically by increasing memory, CPU, and storage on a single instance. Use existing tools to [tune parameters](#tuning) and [monitor performance](#monitoring).
Scale horizontally with [replicas](https://www.postgresql.org/docs/current/hot-standby.html), or use [Citus](https://github.com/citusdata/citus) or another approach for sharding ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/citus.py)).
## Languages ## Languages
Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another. Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another.
@@ -552,7 +616,17 @@ SELECT pg_size_pretty(pg_relation_size('index_name'));
#### Why isnt a query using an index? #### Why isnt a query using an index?
The cost estimation in pgvector < 0.4.3 does not always work well with the planner. You can encourage the planner to use an index for a query with: The query needs to have an `ORDER BY` and `LIMIT`, and the `ORDER BY` must be the result of a distance operator, not an expression.
```sql
-- index
ORDER BY embedding <=> '[3,1,2]' LIMIT 5;
-- no index
ORDER BY 1 - (embedding <=> '[3,1,2]') DESC LIMIT 5;
```
You can encourage the planner to use an index for a query with:
```sql ```sql
BEGIN; BEGIN;
@@ -608,6 +682,7 @@ Operator | Description | Added
\+ | element-wise addition | \+ | element-wise addition |
\- | element-wise subtraction | \- | element-wise subtraction |
\* | element-wise multiplication | 0.5.0 \* | element-wise multiplication | 0.5.0
\|\| | concatenate | 0.7.0
<-> | Euclidean distance | <-> | Euclidean distance |
<#> | negative inner product | <#> | negative inner product |
<=> | cosine distance | <=> | cosine distance |
@@ -630,7 +705,7 @@ Function | Description | Added
avg(vector) → vector | average | avg(vector) → vector | average |
sum(vector) → vector | sum | 0.5.0 sum(vector) → vector | sum | 0.5.0
## Installation Notes ## Installation Notes - Linux and Mac
### Postgres Location ### Postgres Location
@@ -672,12 +747,24 @@ If compilation fails and the output includes `warning: no such sysroot directory
### Portability ### Portability
By default, pgvector compiles with `-march=native` on some platforms for best performance. However, this can lead to `Illegal instruction` errors if trying to run the compiled extension on a different machine.
To compile for portability, use: To compile for portability, use:
```sh ```sh
make OPTFLAGS="" make OPTFLAGS=""
``` ```
## Installation Notes - Windows
### Missing Header
If compilation fails with `Cannot open include file: 'postgres.h': No such file or directory`, make sure `PGROOT` is correct.
### Permissions
If installation fails with `Access is denied`, re-run the installation instructions as an administrator.
## Additional Installation Methods ## Additional Installation Methods
### Docker ### Docker
@@ -862,6 +949,12 @@ make installcheck REGRESS=functions # regression test
make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test
``` ```
To enable assertions:
```sh
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
```
To enable benchmarking: To enable benchmarking:
```sh ```sh
@@ -874,12 +967,6 @@ To show memory usage:
make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install
``` ```
To enable assertions:
```sh
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
```
To get k-means metrics: To get k-means metrics:
```sh ```sh

View File

@@ -0,0 +1,9 @@
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
\echo Use "ALTER EXTENSION vector UPDATE TO '0.7.0'" to load this file. \quit
CREATE FUNCTION vector_concat(vector, vector) RETURNS vector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE OPERATOR || (
LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_concat
);

View File

@@ -99,6 +99,9 @@ CREATE FUNCTION vector_avg(double precision[]) RETURNS vector
CREATE FUNCTION vector_combine(double precision[], double precision[]) RETURNS double precision[] CREATE FUNCTION vector_combine(double precision[], double precision[]) RETURNS double precision[]
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE; AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
CREATE FUNCTION vector_concat(vector, vector) RETURNS vector
AS 'MODULE_PATHNAME' LANGUAGE C IMMUTABLE STRICT PARALLEL SAFE;
-- aggregates -- aggregates
CREATE AGGREGATE avg(vector) ( CREATE AGGREGATE avg(vector) (
@@ -224,6 +227,10 @@ CREATE OPERATOR > (
RESTRICT = scalargtsel, JOIN = scalargtjoinsel RESTRICT = scalargtsel, JOIN = scalargtjoinsel
); );
CREATE OPERATOR || (
LEFTARG = vector, RIGHTARG = vector, PROCEDURE = vector_concat
);
-- access methods -- access methods
CREATE FUNCTION ivfflathandler(internal) RETURNS index_am_handler CREATE FUNCTION ivfflathandler(internal) RETURNS index_am_handler

View File

@@ -129,7 +129,7 @@ HnswPtrDeclare(HnswNeighborArray, HnswNeighborArrayRelptr, HnswNeighborArrayPtr)
HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr); HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr);
HnswPtrDeclare(char, DatumRelptr, DatumPtr); HnswPtrDeclare(char, DatumRelptr, DatumPtr);
typedef struct HnswElementData struct HnswElementData
{ {
HnswElementPtr next; HnswElementPtr next;
ItemPointerData heaptids[HNSW_HEAPTIDS]; ItemPointerData heaptids[HNSW_HEAPTIDS];
@@ -144,7 +144,7 @@ typedef struct HnswElementData
BlockNumber neighborPage; BlockNumber neighborPage;
DatumPtr value; DatumPtr value;
LWLock lock; LWLock lock;
} HnswElementData; };
typedef HnswElementData * HnswElement; typedef HnswElementData * HnswElement;
@@ -155,12 +155,12 @@ typedef struct HnswCandidate
bool closer; bool closer;
} HnswCandidate; } HnswCandidate;
typedef struct HnswNeighborArray struct HnswNeighborArray
{ {
int length; int length;
bool closerSet; bool closerSet;
HnswCandidate items[FLEXIBLE_ARRAY_MEMBER]; HnswCandidate items[FLEXIBLE_ARRAY_MEMBER];
} HnswNeighborArray; };
typedef struct HnswPairingHeapNode typedef struct HnswPairingHeapNode
{ {

View File

@@ -436,9 +436,9 @@ InsertTupleInMemory(HnswBuildState * buildstate, HnswElement element)
int m = buildstate->m; int m = buildstate->m;
char *base = buildstate->hnswarea; char *base = buildstate->hnswarea;
/* Wait if another process needs exclusive lock */ /* Wait if another process needs exclusive lock on entry lock */
if (LWLockAcquireOrWait(entryWaitLock, LW_EXCLUSIVE)) LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
LWLockRelease(entryWaitLock); LWLockRelease(entryWaitLock);
/* Get entry point */ /* Get entry point */
LWLockAcquire(entryLock, LW_SHARED); LWLockAcquire(entryLock, LW_SHARED);
@@ -450,7 +450,7 @@ InsertTupleInMemory(HnswBuildState * buildstate, HnswElement element)
/* Release shared lock */ /* Release shared lock */
LWLockRelease(entryLock); LWLockRelease(entryLock);
/* Get exclusive lock */ /* Tell other processes to wait and get exclusive lock */
LWLockAcquire(entryWaitLock, LW_EXCLUSIVE); LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
LWLockAcquire(entryLock, LW_EXCLUSIVE); LWLockAcquire(entryLock, LW_EXCLUSIVE);
LWLockRelease(entryWaitLock); LWLockRelease(entryWaitLock);

View File

@@ -1160,3 +1160,28 @@ vector_avg(PG_FUNCTION_ARGS)
PG_RETURN_POINTER(result); PG_RETURN_POINTER(result);
} }
/*
* Concat vectors
*/
PGDLLEXPORT PG_FUNCTION_INFO_V1(vector_concat);
Datum
vector_concat(PG_FUNCTION_ARGS)
{
Vector *a = PG_GETARG_VECTOR_P(0);
Vector *b = PG_GETARG_VECTOR_P(1);
Vector *result;
int dim = a->dim + b->dim;
CheckDim(dim);
result = InitVector(dim);
for (int i = 0; i < a->dim; i++)
result->x[i] = a->x[i];
for (int i = 0; i < b->dim; i++)
result->x[i + a->dim] = b->x[i];
PG_RETURN_POINTER(result);
}

View File

@@ -24,6 +24,14 @@ SELECT '[1e37]'::vector * '[1e37]';
ERROR: value out of range: overflow ERROR: value out of range: overflow
SELECT '[1e-37]'::vector * '[1e-37]'; SELECT '[1e-37]'::vector * '[1e-37]';
ERROR: value out of range: underflow ERROR: value out of range: underflow
SELECT '[1,2,3]'::vector || '[4,5]'::vector;
?column?
-------------
[1,2,3,4,5]
(1 row)
SELECT array_fill(0, ARRAY[16000])::vector || '[1]'::vector;
ERROR: vector cannot have more than 16000 dimensions
SELECT '[1,2,3]'::vector = '[1,2,3]'; SELECT '[1,2,3]'::vector = '[1,2,3]';
?column? ?column?
---------- ----------

View File

@@ -6,6 +6,9 @@ SELECT '[1,2,3]'::vector * '[4,5,6]';
SELECT '[1e37]'::vector * '[1e37]'; SELECT '[1e37]'::vector * '[1e37]';
SELECT '[1e-37]'::vector * '[1e-37]'; SELECT '[1e-37]'::vector * '[1e-37]';
SELECT '[1,2,3]'::vector || '[4,5]'::vector;
SELECT array_fill(0, ARRAY[16000])::vector || '[1]'::vector;
SELECT '[1,2,3]'::vector = '[1,2,3]'; SELECT '[1,2,3]'::vector = '[1,2,3]';
SELECT '[1,2,3]'::vector = '[1,2]'; SELECT '[1,2,3]'::vector = '[1,2]';