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19 Commits

Author SHA1 Message Date
Andrew Kane
96ff19be44 Version bump to 0.6.2 [skip ci] 2024-03-18 10:21:04 -07:00
Andrew Kane
6c969bebad Updated changelog [skip ci] 2024-03-18 10:11:45 -07:00
Andrew Kane
b64a1482d9 Moved example [skip ci] 2024-03-16 15:20:26 -07:00
Andrew Kane
a5f2d70bc2 Use temp directory for installation instructions on Windows [skip ci] 2024-03-16 12:02:45 -07:00
Andrew Kane
f3fcb5e005 Moved installation notes for Windows [skip ci] 2024-03-16 11:47:18 -07:00
Andrew Kane
3a6e0afb9c Added installation notes for Windows [skip ci] 2024-03-16 11:35:55 -07:00
Andrew Kane
183d50bdbd Added note about creating indexes concurrently [skip ci] 2024-03-16 10:45:09 -07:00
Andrew Kane
bd776fee68 Updated readme [skip ci] 2024-03-16 10:44:45 -07:00
Andrew Kane
d30b113e4b Updated readme [skip ci] 2024-03-15 21:54:58 -07:00
Andrew Kane
fd3200f718 Updated readme [skip ci] 2024-03-15 21:47:57 -07:00
Andrew Kane
02c815d876 Added docs on tuning, monitoring, and scaling [skip ci] 2024-03-15 19:00:49 -07:00
Andrew Kane
4b2a7cc49d Improved performance section [skip ci] 2024-03-15 17:54:14 -07:00
Andrew Kane
da0ff998e9 Updated readme [skip ci] 2024-03-15 14:23:56 -07:00
Andrew Kane
cb36e24289 Improved portability section [skip ci] 2024-03-15 14:23:04 -07:00
Andrew Kane
b1d0d4c7a3 Improved troubleshooting docs [skip ci] 2024-03-15 14:01:24 -07:00
Andrew Kane
1dc6514b66 Updated comment [skip ci] 2024-03-15 12:38:14 -07:00
Andrew Kane
6c53f7ca02 Updated comment [skip ci] 2024-03-15 12:37:47 -07:00
Heikki Linnakangas
0d35a14198 Fix compiler warnings in strict C99 mode (#487)
Redefining a typedef is a C11 feature:

    In file included from src/hnsw.c:10:
    src/hnsw.h:147:5: warning: redefinition of typedef 'HnswElementData' is a C11 feature [-Wtypedef-redefinition]
    }                       HnswElementData;
                            ^
    src/hnsw.h:118:32: note: previous definition is here
    typedef struct HnswElementData HnswElementData;
                                   ^
    src/hnsw.h:163:5: warning: redefinition of typedef 'HnswNeighborArray' is a C11 feature [-Wtypedef-redefinition]
    }                       HnswNeighborArray;
                            ^
    src/hnsw.h:119:34: note: previous definition is here
    typedef struct HnswNeighborArray HnswNeighborArray;
                                     ^
    2 warnings generated.

I got these warnings when I built PostgreSQL with "CC=clang
CFLAGS=-std=gnu99"; other similar options would surely produce the
warnings too.
2024-03-12 02:02:33 -07:00
Andrew Kane
3ea2ce89be Reduced lock contention with parallel HNSW index builds 2024-03-11 20:16:55 -07:00
10 changed files with 141 additions and 40 deletions

View File

@@ -73,6 +73,7 @@ jobs:
postgres-version: 14 postgres-version: 14
- run: | - run: |
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^ call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" && ^
cd %TEMP% && ^
nmake /NOLOGO /F Makefile.win && ^ nmake /NOLOGO /F Makefile.win && ^
nmake /NOLOGO /F Makefile.win install && ^ nmake /NOLOGO /F Makefile.win install && ^
nmake /NOLOGO /F Makefile.win installcheck && ^ nmake /NOLOGO /F Makefile.win installcheck && ^

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@@ -1,11 +1,11 @@
## 0.6.2 (unreleased) ## 0.6.2 (2024-03-18)
- Improved performance of parallel HNSW index builds - Reduced lock contention with parallel HNSW index builds
## 0.6.1 (2024-03-04) ## 0.6.1 (2024-03-04)
- Fixed error with `ANALYZE` and vectors with different dimensions - Fixed error with `ANALYZE` and vectors with different dimensions
- Fixed error with `shared_preload_libraries` - Fixed segmentation fault with `shared_preload_libraries`
- Fixed vector subtraction being marked as commutative - Fixed vector subtraction being marked as commutative
## 0.6.0 (2024-01-29) ## 0.6.0 (2024-01-29)

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@@ -2,7 +2,7 @@
"name": "vector", "name": "vector",
"abstract": "Open-source vector similarity search for Postgres", "abstract": "Open-source vector similarity search for Postgres",
"description": "Supports L2 distance, inner product, and cosine distance", "description": "Supports L2 distance, inner product, and cosine distance",
"version": "0.6.1", "version": "0.6.2",
"maintainer": [ "maintainer": [
"Andrew Kane <andrew@ankane.org>" "Andrew Kane <andrew@ankane.org>"
], ],
@@ -20,7 +20,7 @@
"vector": { "vector": {
"file": "sql/vector.sql", "file": "sql/vector.sql",
"docfile": "README.md", "docfile": "README.md",
"version": "0.6.1", "version": "0.6.2",
"abstract": "Open-source vector similarity search for Postgres" "abstract": "Open-source vector similarity search for Postgres"
} }
}, },

View File

@@ -1,5 +1,5 @@
EXTENSION = vector EXTENSION = vector
EXTVERSION = 0.6.1 EXTVERSION = 0.6.2
MODULE_big = vector MODULE_big = vector
DATA = $(wildcard sql/*--*.sql) DATA = $(wildcard sql/*--*.sql)

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@@ -1,5 +1,5 @@
EXTENSION = vector EXTENSION = vector
EXTVERSION = 0.6.1 EXTVERSION = 0.6.2
OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj OBJS = src\hnsw.obj src\hnswbuild.obj src\hnswinsert.obj src\hnswscan.obj src\hnswutils.obj src\hnswvacuum.obj src\ivfbuild.obj src\ivfflat.obj src\ivfinsert.obj src\ivfkmeans.obj src\ivfscan.obj src\ivfutils.obj src\ivfvacuum.obj src\vector.obj
HEADERS = src\vector.h HEADERS = src\vector.h

116
README.md
View File

@@ -20,13 +20,13 @@ Compile and install the extension (supports Postgres 12+)
```sh ```sh
cd /tmp cd /tmp
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
cd pgvector cd pgvector
make make
make install # may need sudo make install # may need sudo
``` ```
See the [installation notes](#installation-notes) if you run into issues See the [installation notes](#installation-notes---linux-and-mac) if you run into issues
You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector). You can also install it with [Docker](#docker), [Homebrew](#homebrew), [PGXN](#pgxn), [APT](#apt), [Yum](#yum), [pkg](#pkg), or [conda-forge](#conda-forge), and it comes preinstalled with [Postgres.app](#postgresapp) and many [hosted providers](#hosted-postgres). There are also instructions for [GitHub Actions](https://github.com/pgvector/setup-pgvector).
@@ -44,12 +44,15 @@ Then use `nmake` to build:
```cmd ```cmd
set "PGROOT=C:\Program Files\PostgreSQL\16" set "PGROOT=C:\Program Files\PostgreSQL\16"
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git cd %TEMP%
git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
cd pgvector cd pgvector
nmake /F Makefile.win nmake /F Makefile.win
nmake /F Makefile.win install nmake /F Makefile.win install
``` ```
See the [installation notes](#installation-notes---windows) if you run into issues
You can also install it with [Docker](#docker) or [conda-forge](#conda-forge). You can also install it with [Docker](#docker) or [conda-forge](#conda-forge).
## Getting Started ## Getting Started
@@ -410,13 +413,39 @@ You can use [Reciprocal Rank Fusion](https://github.com/pgvector/pgvector-python
## Performance ## Performance
### Tuning
Use a tool like [PgTune](https://pgtune.leopard.in.ua/) to set initial values for Postgres server parameters.
### Loading
Use `COPY` for bulk loading data ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/bulk_loading.py)).
```sql
COPY items (embedding) FROM STDIN WITH (FORMAT BINARY);
```
Add any indexes *after* loading the initial data for best performance.
### Indexing
See index build time for [HNSW](#index-build-time) and [IVFFlat](#index-build-time-1).
In production environments, create indexes concurrently to avoid blocking writes.
```sql
CREATE INDEX CONCURRENTLY ...
```
### Querying
Use `EXPLAIN ANALYZE` to debug performance. Use `EXPLAIN ANALYZE` to debug performance.
```sql ```sql
EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5; EXPLAIN ANALYZE SELECT * FROM items ORDER BY embedding <-> '[3,1,2]' LIMIT 5;
``` ```
### Exact Search #### Exact Search
To speed up queries without an index, increase `max_parallel_workers_per_gather`. To speed up queries without an index, increase `max_parallel_workers_per_gather`.
@@ -430,7 +459,7 @@ If vectors are normalized to length 1 (like [OpenAI embeddings](https://platform
SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5; SELECT * FROM items ORDER BY embedding <#> '[3,1,2]' LIMIT 5;
``` ```
### Approximate Search #### Approximate Search
To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall). To speed up queries with an IVFFlat index, increase the number of inverted lists (at the expense of recall).
@@ -438,7 +467,7 @@ To speed up queries with an IVFFlat index, increase the number of inverted lists
CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000); CREATE INDEX ON items USING ivfflat (embedding vector_l2_ops) WITH (lists = 1000);
``` ```
## Vacuuming ### Vacuuming
Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first. Vacuuming can take a while for HNSW indexes. Speed it up by reindexing first.
@@ -447,6 +476,41 @@ REINDEX INDEX CONCURRENTLY index_name;
VACUUM table_name; VACUUM table_name;
``` ```
## Monitoring
Monitor performance with [pg_stat_statements](https://www.postgresql.org/docs/current/pgstatstatements.html) (be sure to add it to `shared_preload_libraries`).
```sql
CREATE EXTENSION pg_stat_statements;
```
Get the most time-consuming queries with:
```sql
SELECT query, calls, ROUND((total_plan_time + total_exec_time) / calls) AS avg_time_ms,
ROUND((total_plan_time + total_exec_time) / 60000) AS total_time_min
FROM pg_stat_statements ORDER BY total_plan_time + total_exec_time DESC LIMIT 20;
```
Note: Replace `total_plan_time + total_exec_time` with `total_time` for Postgres < 13
Monitor recall by comparing results from approximate search with exact search.
```sql
BEGIN;
SET LOCAL enable_indexscan = off; -- use exact search
SELECT ...
COMMIT;
```
## Scaling
Scale pgvector the same way you scale Postgres.
Scale vertically by increasing memory, CPU, and storage on a single instance. Use existing tools to [tune parameters](#tuning) and [monitor performance](#monitoring).
Scale horizontally with [replicas](https://www.postgresql.org/docs/current/hot-standby.html), or use [Citus](https://github.com/citusdata/citus) or another approach for sharding ([example](https://github.com/pgvector/pgvector-python/blob/master/examples/citus.py)).
## Languages ## Languages
Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another. Use pgvector from any language with a Postgres client. You can even generate and store vectors in one language and query them in another.
@@ -552,7 +616,17 @@ SELECT pg_size_pretty(pg_relation_size('index_name'));
#### Why isnt a query using an index? #### Why isnt a query using an index?
The cost estimation in pgvector < 0.4.3 does not always work well with the planner. You can encourage the planner to use an index for a query with: The query needs to have an `ORDER BY` and `LIMIT`, and the `ORDER BY` must be the result of a distance operator, not an expression.
```sql
-- index
ORDER BY embedding <=> '[3,1,2]' LIMIT 5;
-- no index
ORDER BY 1 - (embedding <=> '[3,1,2]') DESC LIMIT 5;
```
You can encourage the planner to use an index for a query with:
```sql ```sql
BEGIN; BEGIN;
@@ -630,7 +704,7 @@ Function | Description | Added
avg(vector) → vector | average | avg(vector) → vector | average |
sum(vector) → vector | sum | 0.5.0 sum(vector) → vector | sum | 0.5.0
## Installation Notes ## Installation Notes - Linux and Mac
### Postgres Location ### Postgres Location
@@ -672,12 +746,24 @@ If compilation fails and the output includes `warning: no such sysroot directory
### Portability ### Portability
By default, pgvector compiles with `-march=native` on some platforms for best performance. However, this can lead to `Illegal instruction` errors if trying to run the compiled extension on a different machine.
To compile for portability, use: To compile for portability, use:
```sh ```sh
make OPTFLAGS="" make OPTFLAGS=""
``` ```
## Installation Notes - Windows
### Missing Header
If compilation fails with `Cannot open include file: 'postgres.h': No such file or directory`, make sure `PGROOT` is correct.
### Permissions
If installation fails with `Access is denied`, re-run the installation instructions as an administrator.
## Additional Installation Methods ## Additional Installation Methods
### Docker ### Docker
@@ -693,7 +779,7 @@ This adds pgvector to the [Postgres image](https://hub.docker.com/_/postgres) (r
You can also build the image manually: You can also build the image manually:
```sh ```sh
git clone --branch v0.6.1 https://github.com/pgvector/pgvector.git git clone --branch v0.6.2 https://github.com/pgvector/pgvector.git
cd pgvector cd pgvector
docker build --build-arg PG_MAJOR=16 -t myuser/pgvector . docker build --build-arg PG_MAJOR=16 -t myuser/pgvector .
``` ```
@@ -862,6 +948,12 @@ make installcheck REGRESS=functions # regression test
make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test make prove_installcheck PROVE_TESTS=test/t/001_ivfflat_wal.pl # TAP test
``` ```
To enable assertions:
```sh
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
```
To enable benchmarking: To enable benchmarking:
```sh ```sh
@@ -874,12 +966,6 @@ To show memory usage:
make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install make clean && PG_CFLAGS="-DHNSW_MEMORY -DIVFFLAT_MEMORY" make && make install
``` ```
To enable assertions:
```sh
make clean && PG_CFLAGS="-DUSE_ASSERT_CHECKING" make && make install
```
To get k-means metrics: To get k-means metrics:
```sh ```sh

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@@ -0,0 +1,2 @@
-- complain if script is sourced in psql, rather than via CREATE EXTENSION
\echo Use "ALTER EXTENSION vector UPDATE TO '0.6.2'" to load this file. \quit

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@@ -129,7 +129,7 @@ HnswPtrDeclare(HnswNeighborArray, HnswNeighborArrayRelptr, HnswNeighborArrayPtr)
HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr); HnswPtrDeclare(HnswNeighborArrayPtr, HnswNeighborsRelptr, HnswNeighborsPtr);
HnswPtrDeclare(char, DatumRelptr, DatumPtr); HnswPtrDeclare(char, DatumRelptr, DatumPtr);
typedef struct HnswElementData struct HnswElementData
{ {
HnswElementPtr next; HnswElementPtr next;
ItemPointerData heaptids[HNSW_HEAPTIDS]; ItemPointerData heaptids[HNSW_HEAPTIDS];
@@ -144,7 +144,7 @@ typedef struct HnswElementData
BlockNumber neighborPage; BlockNumber neighborPage;
DatumPtr value; DatumPtr value;
LWLock lock; LWLock lock;
} HnswElementData; };
typedef HnswElementData * HnswElement; typedef HnswElementData * HnswElement;
@@ -155,12 +155,12 @@ typedef struct HnswCandidate
bool closer; bool closer;
} HnswCandidate; } HnswCandidate;
typedef struct HnswNeighborArray struct HnswNeighborArray
{ {
int length; int length;
bool closerSet; bool closerSet;
HnswCandidate items[FLEXIBLE_ARRAY_MEMBER]; HnswCandidate items[FLEXIBLE_ARRAY_MEMBER];
} HnswNeighborArray; };
typedef struct HnswPairingHeapNode typedef struct HnswPairingHeapNode
{ {
@@ -185,6 +185,7 @@ typedef struct HnswGraph
/* Entry state */ /* Entry state */
LWLock entryLock; LWLock entryLock;
LWLock entryWaitLock;
HnswElementPtr entryPoint; HnswElementPtr entryPoint;
/* Allocations state */ /* Allocations state */

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@@ -400,7 +400,7 @@ UpdateNeighborsInMemory(char *base, FmgrInfo *procinfo, Oid collation, HnswEleme
* Update graph in memory * Update graph in memory
*/ */
static void static void
UpdateGraphInMemory(FmgrInfo *procinfo, Oid collation, HnswElement element, int m, int efConstruction, bool updateEntryPoint, HnswBuildState * buildstate) UpdateGraphInMemory(FmgrInfo *procinfo, Oid collation, HnswElement element, int m, int efConstruction, HnswElement entryPoint, HnswBuildState * buildstate)
{ {
HnswGraph *graph = buildstate->graph; HnswGraph *graph = buildstate->graph;
char *base = buildstate->hnswarea; char *base = buildstate->hnswarea;
@@ -416,7 +416,7 @@ UpdateGraphInMemory(FmgrInfo *procinfo, Oid collation, HnswElement element, int
UpdateNeighborsInMemory(base, procinfo, collation, element, m); UpdateNeighborsInMemory(base, procinfo, collation, element, m);
/* Update entry point if needed (already have lock) */ /* Update entry point if needed (already have lock) */
if (updateEntryPoint) if (entryPoint == NULL || element->level > entryPoint->level)
HnswPtrStore(base, graph->entryPoint, element); HnswPtrStore(base, graph->entryPoint, element);
} }
@@ -431,32 +431,42 @@ InsertTupleInMemory(HnswBuildState * buildstate, HnswElement element)
HnswGraph *graph = buildstate->graph; HnswGraph *graph = buildstate->graph;
HnswElement entryPoint; HnswElement entryPoint;
LWLock *entryLock = &graph->entryLock; LWLock *entryLock = &graph->entryLock;
LWLock *entryWaitLock = &graph->entryWaitLock;
int efConstruction = buildstate->efConstruction; int efConstruction = buildstate->efConstruction;
int m = buildstate->m; int m = buildstate->m;
char *base = buildstate->hnswarea; char *base = buildstate->hnswarea;
bool updateEntryPoint;
/* Wait if another process needs exclusive lock on entry lock */
LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
LWLockRelease(entryWaitLock);
/* Get entry point */ /* Get entry point */
LWLockAcquire(entryLock, LW_EXCLUSIVE); LWLockAcquire(entryLock, LW_SHARED);
entryPoint = HnswPtrAccess(base, graph->entryPoint); entryPoint = HnswPtrAccess(base, graph->entryPoint);
/* Pause new inserts when updating entry point */ /* Prevent concurrent inserts when likely updating entry point */
/* May still be in-flight inserts */ if (entryPoint == NULL || element->level > entryPoint->level)
updateEntryPoint = entryPoint == NULL || element->level > entryPoint->level; {
/* Release shared lock */
/* Release entry lock */
if (!updateEntryPoint)
LWLockRelease(entryLock); LWLockRelease(entryLock);
/* Tell other processes to wait and get exclusive lock */
LWLockAcquire(entryWaitLock, LW_EXCLUSIVE);
LWLockAcquire(entryLock, LW_EXCLUSIVE);
LWLockRelease(entryWaitLock);
/* Get latest entry point after lock is acquired */
entryPoint = HnswPtrAccess(base, graph->entryPoint);
}
/* Find neighbors for element */ /* Find neighbors for element */
HnswFindElementNeighbors(base, element, entryPoint, NULL, procinfo, collation, m, efConstruction, false); HnswFindElementNeighbors(base, element, entryPoint, NULL, procinfo, collation, m, efConstruction, false);
/* Update graph in memory */ /* Update graph in memory */
UpdateGraphInMemory(procinfo, collation, element, m, efConstruction, updateEntryPoint, buildstate); UpdateGraphInMemory(procinfo, collation, element, m, efConstruction, entryPoint, buildstate);
/* Release entry lock */ /* Release entry lock */
if (updateEntryPoint) LWLockRelease(entryLock);
LWLockRelease(entryLock);
} }
/* /*
@@ -609,6 +619,7 @@ InitGraph(HnswGraph * graph, char *base, long memoryTotal)
graph->indtuples = 0; graph->indtuples = 0;
SpinLockInit(&graph->lock); SpinLockInit(&graph->lock);
LWLockInitialize(&graph->entryLock, hnsw_lock_tranche_id); LWLockInitialize(&graph->entryLock, hnsw_lock_tranche_id);
LWLockInitialize(&graph->entryWaitLock, hnsw_lock_tranche_id);
LWLockInitialize(&graph->allocatorLock, hnsw_lock_tranche_id); LWLockInitialize(&graph->allocatorLock, hnsw_lock_tranche_id);
LWLockInitialize(&graph->flushLock, hnsw_lock_tranche_id); LWLockInitialize(&graph->flushLock, hnsw_lock_tranche_id);
} }

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@@ -1,4 +1,4 @@
comment = 'vector data type and ivfflat and hnsw access methods' comment = 'vector data type and ivfflat and hnsw access methods'
default_version = '0.6.1' default_version = '0.6.2'
module_pathname = '$libdir/vector' module_pathname = '$libdir/vector'
relocatable = true relocatable = true